Experiment: R2A with nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24910 and RR42_RS24915 are separated by 344 nucleotides RR42_RS24915 and RR42_RS24920 are separated by 99 nucleotides RR42_RS24920 and RR42_RS24925 are separated by 2 nucleotides
RR42_RS24910: RR42_RS24910 - hypothetical protein, at 926,648 to 927,565
_RS24910
RR42_RS24915: RR42_RS24915 - hypothetical protein, at 927,910 to 928,101
_RS24915
RR42_RS24920: RR42_RS24920 - MFS transporter, at 928,201 to 929,736
_RS24920
RR42_RS24925: RR42_RS24925 - LysR family transcriptional regulator, at 929,739 to 930,644
_RS24925
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.208 kb on - strand, within RR42_RS24910 at 927.258 kb on + strand, within RR42_RS24910 at 927.259 kb on - strand, within RR42_RS24910 at 927.259 kb on - strand, within RR42_RS24910 at 927.358 kb on - strand, within RR42_RS24910 at 927.471 kb on + strand, within RR42_RS24910 at 927.550 kb on + strand at 927.617 kb on + strand at 927.617 kb on + strand at 927.618 kb on - strand at 927.618 kb on - strand at 927.798 kb on - strand at 927.857 kb on - strand at 927.857 kb on - strand at 927.909 kb on + strand at 927.910 kb on - strand at 927.910 kb on - strand at 927.960 kb on + strand, within RR42_RS24915 at 927.960 kb on + strand, within RR42_RS24915 at 927.961 kb on - strand, within RR42_RS24915 at 928.046 kb on + strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.162 kb on + strand at 928.276 kb on + strand at 928.369 kb on + strand, within RR42_RS24920 at 928.369 kb on + strand, within RR42_RS24920 at 928.370 kb on - strand, within RR42_RS24920 at 928.439 kb on - strand, within RR42_RS24920 at 928.537 kb on + strand, within RR42_RS24920 at 928.818 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.856 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.036 kb on + strand, within RR42_RS24920 at 929.037 kb on - strand, within RR42_RS24920 at 929.045 kb on - strand, within RR42_RS24920 at 929.047 kb on + strand, within RR42_RS24920 at 929.068 kb on + strand, within RR42_RS24920 at 929.174 kb on - strand, within RR42_RS24920 at 929.431 kb on + strand, within RR42_RS24920 at 929.625 kb on + strand at 929.671 kb on + strand at 929.959 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.166 kb on + strand, within RR42_RS24925 at 930.167 kb on - strand, within RR42_RS24925 at 930.177 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.388 kb on + strand, within RR42_RS24925 at 930.389 kb on - strand, within RR42_RS24925 at 930.501 kb on + strand, within RR42_RS24925 at 930.502 kb on - strand, within RR42_RS24925 at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.565 kb on - strand at 930.688 kb on + strand at 930.689 kb on - strand at 930.718 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM remove 927,208 - RR42_RS24910 0.61 -1.2 927,258 + RR42_RS24910 0.66 -0.4 927,259 - RR42_RS24910 0.67 +0.6 927,259 - RR42_RS24910 0.67 -1.2 927,358 - RR42_RS24910 0.77 +0.7 927,471 + RR42_RS24910 0.90 -1.1 927,550 + +0.7 927,617 + -0.1 927,617 + -0.3 927,618 - -1.0 927,618 - +0.2 927,798 - +0.1 927,857 - -1.9 927,857 - -0.4 927,909 + -0.5 927,910 - +0.6 927,910 - +0.4 927,960 + RR42_RS24915 0.26 +0.3 927,960 + RR42_RS24915 0.26 +1.3 927,961 - RR42_RS24915 0.27 -1.4 928,046 + RR42_RS24915 0.71 -0.9 928,047 - RR42_RS24915 0.71 -1.2 928,047 - RR42_RS24915 0.71 -0.3 928,047 - RR42_RS24915 0.71 +0.4 928,047 - RR42_RS24915 0.71 -2.1 928,162 + -0.7 928,276 + +1.7 928,369 + RR42_RS24920 0.11 +0.7 928,369 + RR42_RS24920 0.11 -1.2 928,370 - RR42_RS24920 0.11 -0.7 928,439 - RR42_RS24920 0.15 -0.1 928,537 + RR42_RS24920 0.22 -2.9 928,818 + RR42_RS24920 0.40 -0.0 928,819 + RR42_RS24920 0.40 +0.0 928,819 + RR42_RS24920 0.40 +0.1 928,819 + RR42_RS24920 0.40 +0.1 928,819 + RR42_RS24920 0.40 -0.4 928,856 + RR42_RS24920 0.43 -1.1 929,032 + RR42_RS24920 0.54 -0.4 929,032 + RR42_RS24920 0.54 +0.5 929,032 + RR42_RS24920 0.54 +1.6 929,033 - RR42_RS24920 0.54 +1.0 929,033 - RR42_RS24920 0.54 -0.3 929,033 - RR42_RS24920 0.54 +2.7 929,036 + RR42_RS24920 0.54 -0.2 929,037 - RR42_RS24920 0.54 -0.4 929,045 - RR42_RS24920 0.55 +0.2 929,047 + RR42_RS24920 0.55 -0.8 929,068 + RR42_RS24920 0.56 -1.9 929,174 - RR42_RS24920 0.63 +1.0 929,431 + RR42_RS24920 0.80 -0.6 929,625 + +0.7 929,671 + -0.9 929,959 - RR42_RS24925 0.24 +1.2 930,146 - RR42_RS24925 0.45 -0.3 930,146 - RR42_RS24925 0.45 +0.2 930,146 - RR42_RS24925 0.45 +0.5 930,166 + RR42_RS24925 0.47 +0.4 930,167 - RR42_RS24925 0.47 -0.6 930,177 + RR42_RS24925 0.48 -0.5 930,264 + RR42_RS24925 0.58 +0.5 930,264 + RR42_RS24925 0.58 +0.0 930,264 + RR42_RS24925 0.58 +1.2 930,388 + RR42_RS24925 0.72 -1.4 930,389 - RR42_RS24925 0.72 +0.3 930,501 + RR42_RS24925 0.84 +1.5 930,502 - RR42_RS24925 0.84 -2.3 930,564 + -1.1 930,564 + -0.2 930,564 + -0.3 930,564 + -2.6 930,565 - -1.9 930,688 + +0.1 930,689 - +1.0 930,718 - -0.0
Or see this region's nucleotide sequence