Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23075

Experiment: R2A with nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS23070 and RR42_RS23075 are separated by 31 nucleotidesRR42_RS23075 and RR42_RS23080 are separated by 204 nucleotides RR42_RS23070: RR42_RS23070 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 510,423 to 511,454 _RS23070 RR42_RS23075: RR42_RS23075 - ABC transporter substrate-binding protein, at 511,486 to 512,451 _RS23075 RR42_RS23080: RR42_RS23080 - LysR family transcriptional regulator, at 512,656 to 513,591 _RS23080 Position (kb) 511 512 513Strain fitness (log2 ratio) -2 -1 0 1at 510.634 kb on + strand, within RR42_RS23070at 510.635 kb on - strand, within RR42_RS23070at 510.635 kb on - strand, within RR42_RS23070at 510.635 kb on - strand, within RR42_RS23070at 510.635 kb on - strand, within RR42_RS23070at 511.040 kb on + strand, within RR42_RS23070at 511.154 kb on - strand, within RR42_RS23070at 511.573 kb on - strandat 511.694 kb on + strand, within RR42_RS23075at 511.695 kb on - strand, within RR42_RS23075at 511.821 kb on + strand, within RR42_RS23075at 511.821 kb on + strand, within RR42_RS23075at 511.822 kb on - strand, within RR42_RS23075at 511.907 kb on + strand, within RR42_RS23075at 511.908 kb on - strand, within RR42_RS23075at 511.908 kb on - strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.993 kb on - strand, within RR42_RS23075at 512.221 kb on - strand, within RR42_RS23075at 512.235 kb on + strand, within RR42_RS23075at 512.235 kb on + strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.385 kb on - strandat 512.452 kb on + strandat 512.452 kb on + strandat 512.452 kb on + strandat 512.470 kb on + strandat 512.526 kb on + strandat 512.535 kb on + strandat 512.535 kb on + strandat 512.535 kb on + strandat 512.535 kb on + strandat 512.536 kb on - strandat 512.536 kb on - strandat 512.536 kb on - strandat 512.536 kb on - strandat 512.536 kb on - strandat 512.537 kb on + strandat 512.537 kb on + strandat 512.836 kb on + strand, within RR42_RS23080at 512.837 kb on - strand, within RR42_RS23080at 513.083 kb on + strand, within RR42_RS23080at 513.083 kb on + strand, within RR42_RS23080at 513.084 kb on - strand, within RR42_RS23080at 513.090 kb on - strand, within RR42_RS23080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
remove
510,634 + RR42_RS23070 0.20 -1.3
510,635 - RR42_RS23070 0.21 +0.4
510,635 - RR42_RS23070 0.21 -1.2
510,635 - RR42_RS23070 0.21 -0.7
510,635 - RR42_RS23070 0.21 -2.1
511,040 + RR42_RS23070 0.60 +0.1
511,154 - RR42_RS23070 0.71 -0.7
511,573 - +0.3
511,694 + RR42_RS23075 0.22 +1.6
511,695 - RR42_RS23075 0.22 +0.4
511,821 + RR42_RS23075 0.35 -0.7
511,821 + RR42_RS23075 0.35 +0.5
511,822 - RR42_RS23075 0.35 +0.8
511,907 + RR42_RS23075 0.44 +0.2
511,908 - RR42_RS23075 0.44 -0.2
511,908 - RR42_RS23075 0.44 +1.4
511,992 + RR42_RS23075 0.52 -0.1
511,992 + RR42_RS23075 0.52 -0.1
511,992 + RR42_RS23075 0.52 -0.6
511,992 + RR42_RS23075 0.52 -0.4
511,993 - RR42_RS23075 0.52 -0.3
512,221 - RR42_RS23075 0.76 -0.0
512,235 + RR42_RS23075 0.78 -0.6
512,235 + RR42_RS23075 0.78 -0.9
512,236 - RR42_RS23075 0.78 +0.3
512,236 - RR42_RS23075 0.78 -0.4
512,236 - RR42_RS23075 0.78 +0.3
512,385 - +0.1
512,452 + +0.2
512,452 + -0.0
512,452 + +1.7
512,470 + -0.2
512,526 + +1.4
512,535 + +0.1
512,535 + -0.6
512,535 + -0.3
512,535 + +0.3
512,536 - -0.3
512,536 - -0.1
512,536 - -2.1
512,536 - -0.7
512,536 - -0.8
512,537 + +1.1
512,537 + +0.5
512,836 + RR42_RS23080 0.19 -1.2
512,837 - RR42_RS23080 0.19 +0.8
513,083 + RR42_RS23080 0.46 -0.9
513,083 + RR42_RS23080 0.46 -0.0
513,084 - RR42_RS23080 0.46 +0.2
513,090 - RR42_RS23080 0.46 -0.0

Or see this region's nucleotide sequence