Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22435

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22425 and RR42_RS22430 are separated by 8 nucleotidesRR42_RS22430 and RR42_RS22435 overlap by 4 nucleotidesRR42_RS22435 and RR42_RS22440 are separated by 32 nucleotidesRR42_RS22440 and RR42_RS22445 overlap by 4 nucleotides RR42_RS22425: RR42_RS22425 - CDP-alcohol phosphatidyltransferase, at 367,761 to 368,429 _RS22425 RR42_RS22430: RR42_RS22430 - 2OG-Fe(II) oxygenase, at 368,438 to 369,280 _RS22430 RR42_RS22435: RR42_RS22435 - membrane protein, at 369,277 to 370,284 _RS22435 RR42_RS22440: RR42_RS22440 - ADP-glucose pyrophosphorylase, at 370,317 to 371,081 _RS22440 RR42_RS22445: RR42_RS22445 - phosphoenolpyruvate phosphomutase, at 371,078 to 372,784 _RS22445 Position (kb) 369 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 368.277 kb on + strand, within RR42_RS22425at 368.277 kb on + strand, within RR42_RS22425at 368.278 kb on - strand, within RR42_RS22425at 368.278 kb on - strand, within RR42_RS22425at 368.278 kb on - strand, within RR42_RS22425at 368.377 kb on - strandat 368.714 kb on + strand, within RR42_RS22430at 368.715 kb on - strand, within RR42_RS22430at 368.769 kb on + strand, within RR42_RS22430at 368.793 kb on - strand, within RR42_RS22430at 368.793 kb on - strand, within RR42_RS22430at 368.876 kb on + strand, within RR42_RS22430at 368.876 kb on + strand, within RR42_RS22430at 368.876 kb on + strand, within RR42_RS22430at 368.877 kb on - strand, within RR42_RS22430at 368.885 kb on + strand, within RR42_RS22430at 368.885 kb on + strand, within RR42_RS22430at 368.885 kb on + strand, within RR42_RS22430at 368.885 kb on + strand, within RR42_RS22430at 368.885 kb on + strand, within RR42_RS22430at 368.885 kb on + strand, within RR42_RS22430at 368.886 kb on - strand, within RR42_RS22430at 368.888 kb on + strand, within RR42_RS22430at 368.888 kb on + strand, within RR42_RS22430at 368.888 kb on + strand, within RR42_RS22430at 368.888 kb on + strand, within RR42_RS22430at 368.889 kb on - strand, within RR42_RS22430at 368.889 kb on - strand, within RR42_RS22430at 368.891 kb on + strand, within RR42_RS22430at 368.891 kb on + strand, within RR42_RS22430at 368.892 kb on - strand, within RR42_RS22430at 368.936 kb on + strand, within RR42_RS22430at 368.937 kb on - strand, within RR42_RS22430at 368.937 kb on - strand, within RR42_RS22430at 368.937 kb on - strand, within RR42_RS22430at 368.937 kb on - strand, within RR42_RS22430at 368.940 kb on - strand, within RR42_RS22430at 369.002 kb on + strand, within RR42_RS22430at 369.155 kb on + strand, within RR42_RS22430at 369.156 kb on - strand, within RR42_RS22430at 369.156 kb on - strand, within RR42_RS22430at 369.202 kb on + strandat 369.221 kb on + strandat 369.448 kb on + strand, within RR42_RS22435at 369.448 kb on + strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.449 kb on - strand, within RR42_RS22435at 369.764 kb on + strand, within RR42_RS22435at 369.765 kb on - strand, within RR42_RS22435at 369.765 kb on - strand, within RR42_RS22435at 369.765 kb on - strand, within RR42_RS22435at 369.765 kb on - strand, within RR42_RS22435at 369.770 kb on + strand, within RR42_RS22435at 369.770 kb on + strand, within RR42_RS22435at 369.770 kb on + strand, within RR42_RS22435at 369.771 kb on - strand, within RR42_RS22435at 369.781 kb on + strand, within RR42_RS22435at 369.782 kb on - strand, within RR42_RS22435at 369.836 kb on + strand, within RR42_RS22435at 369.907 kb on + strand, within RR42_RS22435at 369.907 kb on + strand, within RR42_RS22435at 369.907 kb on + strand, within RR42_RS22435at 369.908 kb on - strand, within RR42_RS22435at 369.908 kb on - strand, within RR42_RS22435at 370.216 kb on + strandat 370.216 kb on + strandat 370.220 kb on + strandat 370.346 kb on - strandat 370.650 kb on + strand, within RR42_RS22440at 370.651 kb on - strand, within RR42_RS22440at 370.651 kb on - strand, within RR42_RS22440at 370.806 kb on + strand, within RR42_RS22440at 370.807 kb on - strand, within RR42_RS22440at 370.887 kb on + strand, within RR42_RS22440at 370.887 kb on + strand, within RR42_RS22440at 370.888 kb on - strand, within RR42_RS22440at 370.960 kb on + strand, within RR42_RS22440at 370.960 kb on + strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440at 370.961 kb on - strand, within RR42_RS22440

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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368,277 + RR42_RS22425 0.77 -0.9
368,277 + RR42_RS22425 0.77 -0.1
368,278 - RR42_RS22425 0.77 +0.2
368,278 - RR42_RS22425 0.77 -0.3
368,278 - RR42_RS22425 0.77 -0.6
368,377 - -0.4
368,714 + RR42_RS22430 0.33 -0.4
368,715 - RR42_RS22430 0.33 -1.3
368,769 + RR42_RS22430 0.39 -0.4
368,793 - RR42_RS22430 0.42 +0.3
368,793 - RR42_RS22430 0.42 -2.0
368,876 + RR42_RS22430 0.52 -0.2
368,876 + RR42_RS22430 0.52 +0.3
368,876 + RR42_RS22430 0.52 +0.2
368,877 - RR42_RS22430 0.52 +0.5
368,885 + RR42_RS22430 0.53 +0.0
368,885 + RR42_RS22430 0.53 -0.2
368,885 + RR42_RS22430 0.53 +0.1
368,885 + RR42_RS22430 0.53 +0.5
368,885 + RR42_RS22430 0.53 -0.5
368,885 + RR42_RS22430 0.53 +0.1
368,886 - RR42_RS22430 0.53 +0.2
368,888 + RR42_RS22430 0.53 -0.5
368,888 + RR42_RS22430 0.53 -0.2
368,888 + RR42_RS22430 0.53 +0.6
368,888 + RR42_RS22430 0.53 -1.0
368,889 - RR42_RS22430 0.53 +2.0
368,889 - RR42_RS22430 0.53 +0.8
368,891 + RR42_RS22430 0.54 -1.4
368,891 + RR42_RS22430 0.54 +0.1
368,892 - RR42_RS22430 0.54 -0.7
368,936 + RR42_RS22430 0.59 -0.3
368,937 - RR42_RS22430 0.59 -0.2
368,937 - RR42_RS22430 0.59 -0.1
368,937 - RR42_RS22430 0.59 +0.1
368,937 - RR42_RS22430 0.59 +0.0
368,940 - RR42_RS22430 0.60 +0.8
369,002 + RR42_RS22430 0.67 -0.6
369,155 + RR42_RS22430 0.85 -0.4
369,156 - RR42_RS22430 0.85 -0.2
369,156 - RR42_RS22430 0.85 +0.1
369,202 + -0.1
369,221 + -0.4
369,448 + RR42_RS22435 0.17 -0.8
369,448 + RR42_RS22435 0.17 -2.1
369,449 - RR42_RS22435 0.17 -0.4
369,449 - RR42_RS22435 0.17 +1.0
369,449 - RR42_RS22435 0.17 +0.2
369,449 - RR42_RS22435 0.17 -0.3
369,449 - RR42_RS22435 0.17 -0.8
369,764 + RR42_RS22435 0.48 -2.2
369,765 - RR42_RS22435 0.48 -0.4
369,765 - RR42_RS22435 0.48 +0.4
369,765 - RR42_RS22435 0.48 -0.7
369,765 - RR42_RS22435 0.48 -1.6
369,770 + RR42_RS22435 0.49 -0.6
369,770 + RR42_RS22435 0.49 -1.5
369,770 + RR42_RS22435 0.49 -1.3
369,771 - RR42_RS22435 0.49 -1.6
369,781 + RR42_RS22435 0.50 -1.6
369,782 - RR42_RS22435 0.50 -0.3
369,836 + RR42_RS22435 0.55 -0.7
369,907 + RR42_RS22435 0.62 -1.1
369,907 + RR42_RS22435 0.62 -2.4
369,907 + RR42_RS22435 0.62 -3.0
369,908 - RR42_RS22435 0.63 -0.2
369,908 - RR42_RS22435 0.63 -1.4
370,216 + -0.9
370,216 + -1.3
370,220 + -0.4
370,346 - -0.6
370,650 + RR42_RS22440 0.44 +1.3
370,651 - RR42_RS22440 0.44 +1.3
370,651 - RR42_RS22440 0.44 -0.6
370,806 + RR42_RS22440 0.64 -0.4
370,807 - RR42_RS22440 0.64 +2.6
370,887 + RR42_RS22440 0.75 -0.5
370,887 + RR42_RS22440 0.75 -0.3
370,888 - RR42_RS22440 0.75 -1.1
370,960 + RR42_RS22440 0.84 -0.8
370,960 + RR42_RS22440 0.84 -0.3
370,961 - RR42_RS22440 0.84 +0.3
370,961 - RR42_RS22440 0.84 +1.0
370,961 - RR42_RS22440 0.84 +0.3
370,961 - RR42_RS22440 0.84 -0.5
370,961 - RR42_RS22440 0.84 +0.1

Or see this region's nucleotide sequence