Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13140

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13135 and RR42_RS13140 are separated by 39 nucleotidesRR42_RS13140 and RR42_RS13145 are separated by 50 nucleotides RR42_RS13135: RR42_RS13135 - histidyl-tRNA synthetase, at 2,830,001 to 2,831,389 _RS13135 RR42_RS13140: RR42_RS13140 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 2,831,429 to 2,832,721 _RS13140 RR42_RS13145: RR42_RS13145 - DNA-binding protein, at 2,832,772 to 2,833,785 _RS13145 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -2 -1 0 1at 2831.410 kb on - strandat 2832.728 kb on - strandat 2832.728 kb on - strandat 2832.895 kb on - strand, within RR42_RS13145

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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2,831,410 - -0.3
2,832,728 - -2.5
2,832,728 - -0.2
2,832,895 - RR42_RS13145 0.12 -1.4

Or see this region's nucleotide sequence