Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03285

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03280 and RR42_RS03285 are separated by 57 nucleotidesRR42_RS03285 and RR42_RS03290 are separated by 146 nucleotidesRR42_RS03290 and RR42_RS03295 overlap by 8 nucleotides RR42_RS03280: RR42_RS03280 - LysR family transcriptional regulator, at 725,760 to 726,665 _RS03280 RR42_RS03285: RR42_RS03285 - tricarboxylic transport membrane protein, at 726,723 to 727,679 _RS03285 RR42_RS03290: RR42_RS03290 - transcriptional regulator, at 727,826 to 728,527 _RS03290 RR42_RS03295: RR42_RS03295 - histidine kinase, at 728,520 to 729,947 _RS03295 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1at 726.067 kb on - strand, within RR42_RS03280at 726.194 kb on - strand, within RR42_RS03280at 726.194 kb on - strand, within RR42_RS03280at 726.194 kb on - strand, within RR42_RS03280at 726.194 kb on - strand, within RR42_RS03280at 726.663 kb on + strandat 726.664 kb on - strandat 726.698 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.784 kb on + strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.785 kb on - strandat 726.788 kb on + strandat 726.788 kb on + strandat 726.898 kb on + strand, within RR42_RS03285at 726.899 kb on - strand, within RR42_RS03285at 726.899 kb on - strand, within RR42_RS03285at 726.928 kb on + strand, within RR42_RS03285at 726.929 kb on - strand, within RR42_RS03285at 726.929 kb on - strand, within RR42_RS03285at 727.165 kb on + strand, within RR42_RS03285at 727.165 kb on + strand, within RR42_RS03285at 727.166 kb on - strand, within RR42_RS03285at 727.245 kb on + strand, within RR42_RS03285at 727.245 kb on + strand, within RR42_RS03285at 727.245 kb on + strand, within RR42_RS03285at 727.245 kb on + strand, within RR42_RS03285at 727.246 kb on - strand, within RR42_RS03285at 727.246 kb on - strand, within RR42_RS03285at 727.246 kb on - strand, within RR42_RS03285at 727.320 kb on + strand, within RR42_RS03285at 727.331 kb on - strand, within RR42_RS03285at 727.375 kb on + strand, within RR42_RS03285at 727.376 kb on - strand, within RR42_RS03285at 727.376 kb on - strand, within RR42_RS03285at 727.474 kb on + strand, within RR42_RS03285at 727.474 kb on + strand, within RR42_RS03285at 727.474 kb on + strand, within RR42_RS03285at 727.474 kb on + strand, within RR42_RS03285at 727.475 kb on - strand, within RR42_RS03285at 727.505 kb on - strand, within RR42_RS03285at 727.789 kb on - strandat 727.789 kb on - strandat 727.833 kb on + strandat 727.833 kb on + strandat 727.833 kb on + strandat 727.834 kb on + strandat 727.834 kb on - strandat 727.988 kb on + strandat 727.989 kb on - strand, within RR42_RS03290at 728.147 kb on + strand, within RR42_RS03290at 728.147 kb on + strand, within RR42_RS03290at 728.148 kb on - strand, within RR42_RS03290at 728.148 kb on - strand, within RR42_RS03290at 728.148 kb on - strand, within RR42_RS03290at 728.148 kb on - strand, within RR42_RS03290at 728.334 kb on + strand, within RR42_RS03290at 728.335 kb on - strand, within RR42_RS03290at 728.335 kb on - strand, within RR42_RS03290at 728.378 kb on + strand, within RR42_RS03290at 728.379 kb on - strand, within RR42_RS03290at 728.432 kb on + strand, within RR42_RS03290at 728.433 kb on - strand, within RR42_RS03290at 728.502 kb on - strandat 728.502 kb on - strandat 728.502 kb on - strandat 728.655 kb on + strandat 728.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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726,067 - RR42_RS03280 0.34 +0.7
726,194 - RR42_RS03280 0.48 +0.4
726,194 - RR42_RS03280 0.48 -0.3
726,194 - RR42_RS03280 0.48 -1.1
726,194 - RR42_RS03280 0.48 -0.8
726,663 + +0.2
726,664 - +0.4
726,698 + -0.1
726,784 + -1.1
726,784 + -0.4
726,784 + -1.4
726,784 + -0.6
726,784 + -1.1
726,784 + -0.5
726,784 + -0.1
726,784 + +0.6
726,784 + -0.4
726,784 + +0.0
726,784 + +0.1
726,785 - -0.1
726,785 - -0.2
726,785 - -0.3
726,785 - -0.1
726,785 - +0.1
726,785 - -0.3
726,785 - -0.4
726,785 - -1.7
726,785 - +0.9
726,785 - -1.5
726,788 + +0.3
726,788 + -0.8
726,898 + RR42_RS03285 0.18 +0.9
726,899 - RR42_RS03285 0.18 +1.1
726,899 - RR42_RS03285 0.18 -0.2
726,928 + RR42_RS03285 0.21 -1.7
726,929 - RR42_RS03285 0.22 +0.3
726,929 - RR42_RS03285 0.22 -0.5
727,165 + RR42_RS03285 0.46 -0.2
727,165 + RR42_RS03285 0.46 -0.1
727,166 - RR42_RS03285 0.46 +0.9
727,245 + RR42_RS03285 0.55 +1.2
727,245 + RR42_RS03285 0.55 -0.7
727,245 + RR42_RS03285 0.55 -0.5
727,245 + RR42_RS03285 0.55 -0.3
727,246 - RR42_RS03285 0.55 +0.6
727,246 - RR42_RS03285 0.55 -0.4
727,246 - RR42_RS03285 0.55 -0.3
727,320 + RR42_RS03285 0.62 -0.9
727,331 - RR42_RS03285 0.64 -0.8
727,375 + RR42_RS03285 0.68 -0.5
727,376 - RR42_RS03285 0.68 -0.8
727,376 - RR42_RS03285 0.68 +0.6
727,474 + RR42_RS03285 0.78 +0.1
727,474 + RR42_RS03285 0.78 +0.4
727,474 + RR42_RS03285 0.78 -0.8
727,474 + RR42_RS03285 0.78 -0.4
727,475 - RR42_RS03285 0.79 +0.4
727,505 - RR42_RS03285 0.82 -1.2
727,789 - -0.3
727,789 - -0.4
727,833 + -0.1
727,833 + -0.3
727,833 + -0.7
727,834 + +0.0
727,834 - -1.8
727,988 + -1.1
727,989 - RR42_RS03290 0.23 -0.7
728,147 + RR42_RS03290 0.46 -0.8
728,147 + RR42_RS03290 0.46 -0.4
728,148 - RR42_RS03290 0.46 +0.6
728,148 - RR42_RS03290 0.46 -0.9
728,148 - RR42_RS03290 0.46 +0.2
728,148 - RR42_RS03290 0.46 +0.0
728,334 + RR42_RS03290 0.72 -0.2
728,335 - RR42_RS03290 0.73 -0.6
728,335 - RR42_RS03290 0.73 +0.9
728,378 + RR42_RS03290 0.79 -1.0
728,379 - RR42_RS03290 0.79 +0.4
728,432 + RR42_RS03290 0.86 -0.9
728,433 - RR42_RS03290 0.86 -0.3
728,502 - +0.9
728,502 - +0.3
728,502 - -0.3
728,655 + -0.4
728,656 - -1.7

Or see this region's nucleotide sequence