Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_129

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_128 and Pf6N2E2_129 overlap by 11 nucleotidesPf6N2E2_129 and Pf6N2E2_130 are separated by 65 nucleotidesPf6N2E2_130 and Pf6N2E2_131 are separated by 31 nucleotidesPf6N2E2_131 and Pf6N2E2_132 are separated by 219 nucleotides Pf6N2E2_128 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 177,113 to 179,581 _128 Pf6N2E2_129 - AttH component of AttEFGH ABC transport system, at 179,571 to 180,644 _129 Pf6N2E2_130 - hypothetical protein, at 180,710 to 180,952 _130 Pf6N2E2_131 - hypothetical protein, at 180,984 to 181,157 _131 Pf6N2E2_132 - hcp, at 181,377 to 181,658 _132 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 178.616 kb on + strand, within Pf6N2E2_128at 178.616 kb on + strand, within Pf6N2E2_128at 178.617 kb on - strand, within Pf6N2E2_128at 178.617 kb on - strand, within Pf6N2E2_128at 178.617 kb on - strand, within Pf6N2E2_128at 178.946 kb on + strand, within Pf6N2E2_128at 178.946 kb on + strand, within Pf6N2E2_128at 178.946 kb on + strand, within Pf6N2E2_128at 178.946 kb on + strand, within Pf6N2E2_128at 178.947 kb on - strand, within Pf6N2E2_128at 179.070 kb on + strand, within Pf6N2E2_128at 179.531 kb on + strandat 179.532 kb on - strandat 179.579 kb on + strandat 179.579 kb on + strandat 179.580 kb on - strandat 179.704 kb on + strand, within Pf6N2E2_129at 179.760 kb on + strand, within Pf6N2E2_129at 179.760 kb on + strand, within Pf6N2E2_129at 179.761 kb on - strand, within Pf6N2E2_129at 180.075 kb on + strand, within Pf6N2E2_129at 180.076 kb on - strand, within Pf6N2E2_129at 180.076 kb on - strand, within Pf6N2E2_129at 180.162 kb on + strand, within Pf6N2E2_129at 180.162 kb on + strand, within Pf6N2E2_129at 180.162 kb on + strand, within Pf6N2E2_129at 180.163 kb on - strand, within Pf6N2E2_129at 180.163 kb on - strand, within Pf6N2E2_129at 180.163 kb on - strand, within Pf6N2E2_129at 180.163 kb on - strand, within Pf6N2E2_129at 180.165 kb on + strand, within Pf6N2E2_129at 180.166 kb on - strand, within Pf6N2E2_129at 180.168 kb on + strand, within Pf6N2E2_129at 180.168 kb on + strand, within Pf6N2E2_129at 180.168 kb on + strand, within Pf6N2E2_129at 180.169 kb on - strand, within Pf6N2E2_129at 180.169 kb on - strand, within Pf6N2E2_129at 180.372 kb on + strand, within Pf6N2E2_129at 180.680 kb on + strandat 180.680 kb on + strandat 180.680 kb on + strandat 180.680 kb on + strandat 180.680 kb on + strandat 180.681 kb on - strandat 180.681 kb on - strandat 180.681 kb on - strandat 180.685 kb on + strandat 180.686 kb on - strandat 180.773 kb on + strand, within Pf6N2E2_130at 181.179 kb on - strandat 181.186 kb on + strandat 181.205 kb on - strandat 181.221 kb on + strandat 181.221 kb on + strandat 181.221 kb on + strandat 181.224 kb on + strandat 181.224 kb on + strandat 181.224 kb on + strandat 181.224 kb on + strandat 181.224 kb on + strandat 181.224 kb on + strandat 181.224 kb on + strandat 181.224 kb on + strandat 181.225 kb on - strandat 181.225 kb on - strandat 181.225 kb on - strandat 181.225 kb on - strandat 181.255 kb on + strandat 181.256 kb on - strandat 181.312 kb on - strandat 181.321 kb on + strandat 181.321 kb on + strandat 181.428 kb on + strand, within Pf6N2E2_132at 181.428 kb on + strand, within Pf6N2E2_132at 181.429 kb on - strand, within Pf6N2E2_132at 181.429 kb on - strand, within Pf6N2E2_132at 181.429 kb on - strand, within Pf6N2E2_132at 181.519 kb on + strand, within Pf6N2E2_132at 181.519 kb on + strand, within Pf6N2E2_132at 181.564 kb on + strand, within Pf6N2E2_132at 181.565 kb on - strand, within Pf6N2E2_132at 181.565 kb on - strand, within Pf6N2E2_132at 181.567 kb on + strand, within Pf6N2E2_132at 181.567 kb on + strand, within Pf6N2E2_132at 181.567 kb on + strand, within Pf6N2E2_132at 181.568 kb on - strand, within Pf6N2E2_132at 181.568 kb on - strand, within Pf6N2E2_132at 181.568 kb on - strand, within Pf6N2E2_132

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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178,616 + Pf6N2E2_128 0.61 -0.1
178,616 + Pf6N2E2_128 0.61 +0.3
178,617 - Pf6N2E2_128 0.61 +0.6
178,617 - Pf6N2E2_128 0.61 +0.3
178,617 - Pf6N2E2_128 0.61 +0.2
178,946 + Pf6N2E2_128 0.74 +0.5
178,946 + Pf6N2E2_128 0.74 +0.8
178,946 + Pf6N2E2_128 0.74 +0.2
178,946 + Pf6N2E2_128 0.74 +0.3
178,947 - Pf6N2E2_128 0.74 +0.2
179,070 + Pf6N2E2_128 0.79 +0.1
179,531 + -1.8
179,532 - -0.2
179,579 + -0.2
179,579 + +0.1
179,580 - +0.8
179,704 + Pf6N2E2_129 0.12 +0.4
179,760 + Pf6N2E2_129 0.18 +1.5
179,760 + Pf6N2E2_129 0.18 +0.0
179,761 - Pf6N2E2_129 0.18 +2.2
180,075 + Pf6N2E2_129 0.47 +0.2
180,076 - Pf6N2E2_129 0.47 -0.4
180,076 - Pf6N2E2_129 0.47 -0.2
180,162 + Pf6N2E2_129 0.55 -0.1
180,162 + Pf6N2E2_129 0.55 -0.4
180,162 + Pf6N2E2_129 0.55 +0.1
180,163 - Pf6N2E2_129 0.55 +0.1
180,163 - Pf6N2E2_129 0.55 -0.1
180,163 - Pf6N2E2_129 0.55 -0.6
180,163 - Pf6N2E2_129 0.55 -1.4
180,165 + Pf6N2E2_129 0.55 +0.5
180,166 - Pf6N2E2_129 0.55 -1.6
180,168 + Pf6N2E2_129 0.56 +0.3
180,168 + Pf6N2E2_129 0.56 -0.4
180,168 + Pf6N2E2_129 0.56 -2.5
180,169 - Pf6N2E2_129 0.56 -0.1
180,169 - Pf6N2E2_129 0.56 -0.1
180,372 + Pf6N2E2_129 0.75 -0.3
180,680 + +0.1
180,680 + +0.4
180,680 + +1.1
180,680 + +1.0
180,680 + -0.5
180,681 - -0.1
180,681 - +0.0
180,681 - +0.7
180,685 + +0.1
180,686 - -0.4
180,773 + Pf6N2E2_130 0.26 +0.2
181,179 - +0.9
181,186 + +0.3
181,205 - -0.6
181,221 + -0.0
181,221 + +0.9
181,221 + +0.7
181,224 + +0.5
181,224 + -0.4
181,224 + +0.4
181,224 + -0.1
181,224 + -0.4
181,224 + +0.2
181,224 + +0.8
181,224 + -0.1
181,225 - +0.9
181,225 - +1.0
181,225 - +0.7
181,225 - +0.6
181,255 + +0.2
181,256 - -0.3
181,312 - -0.4
181,321 + -0.8
181,321 + -0.1
181,428 + Pf6N2E2_132 0.18 +0.2
181,428 + Pf6N2E2_132 0.18 -1.0
181,429 - Pf6N2E2_132 0.18 -0.1
181,429 - Pf6N2E2_132 0.18 +1.1
181,429 - Pf6N2E2_132 0.18 -0.5
181,519 + Pf6N2E2_132 0.50 +0.0
181,519 + Pf6N2E2_132 0.50 +0.1
181,564 + Pf6N2E2_132 0.66 +0.3
181,565 - Pf6N2E2_132 0.67 +1.3
181,565 - Pf6N2E2_132 0.67 -0.9
181,567 + Pf6N2E2_132 0.67 -1.7
181,567 + Pf6N2E2_132 0.67 -2.4
181,567 + Pf6N2E2_132 0.67 +0.1
181,568 - Pf6N2E2_132 0.68 -0.1
181,568 - Pf6N2E2_132 0.68 -2.2
181,568 - Pf6N2E2_132 0.68 -2.3

Or see this region's nucleotide sequence