Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_421

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_420 and Pf1N1B4_421 are separated by 14 nucleotidesPf1N1B4_421 and Pf1N1B4_422 are separated by 43 nucleotides Pf1N1B4_420 - Putative deoxyribonuclease YcfH, at 489,069 to 489,860 _420 Pf1N1B4_421 - Type IV pilus biogenesis protein PilZ, at 489,875 to 490,231 _421 Pf1N1B4_422 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 490,275 to 491,261 _422 Position (kb) 489 490 491Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 488.880 kb on + strandat 488.880 kb on + strandat 488.880 kb on + strandat 488.930 kb on + strandat 488.956 kb on + strandat 488.957 kb on - strandat 488.962 kb on + strandat 488.962 kb on + strandat 488.962 kb on + strandat 489.071 kb on - strandat 489.146 kb on - strandat 489.189 kb on + strand, within Pf1N1B4_420at 489.190 kb on - strand, within Pf1N1B4_420at 489.190 kb on - strand, within Pf1N1B4_420at 489.190 kb on - strand, within Pf1N1B4_420at 489.190 kb on - strand, within Pf1N1B4_420at 489.190 kb on - strand, within Pf1N1B4_420at 489.193 kb on + strand, within Pf1N1B4_420at 489.194 kb on - strand, within Pf1N1B4_420at 489.194 kb on - strand, within Pf1N1B4_420at 489.194 kb on - strand, within Pf1N1B4_420at 489.194 kb on - strand, within Pf1N1B4_420at 489.277 kb on - strand, within Pf1N1B4_420at 489.277 kb on - strand, within Pf1N1B4_420at 489.343 kb on + strand, within Pf1N1B4_420at 489.343 kb on + strand, within Pf1N1B4_420at 489.344 kb on - strand, within Pf1N1B4_420at 489.344 kb on - strand, within Pf1N1B4_420at 489.344 kb on - strand, within Pf1N1B4_420at 489.344 kb on - strand, within Pf1N1B4_420at 489.344 kb on - strand, within Pf1N1B4_420at 489.344 kb on - strand, within Pf1N1B4_420at 489.346 kb on + strand, within Pf1N1B4_420at 489.347 kb on - strand, within Pf1N1B4_420at 489.468 kb on - strandat 489.468 kb on - strand, within Pf1N1B4_420at 489.556 kb on + strand, within Pf1N1B4_420at 489.556 kb on + strand, within Pf1N1B4_420at 489.562 kb on + strand, within Pf1N1B4_420at 489.563 kb on - strand, within Pf1N1B4_420at 489.563 kb on - strand, within Pf1N1B4_420at 489.589 kb on - strand, within Pf1N1B4_420at 489.835 kb on - strandat 489.835 kb on - strandat 489.835 kb on - strandat 489.852 kb on + strandat 489.860 kb on + strandat 489.861 kb on - strandat 489.861 kb on - strandat 489.861 kb on - strandat 489.876 kb on + strandat 489.876 kb on + strandat 489.876 kb on + strandat 489.876 kb on + strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.877 kb on - strandat 489.883 kb on + strandat 489.883 kb on + strandat 489.883 kb on + strandat 489.883 kb on + strandat 489.883 kb on + strandat 489.884 kb on - strandat 489.884 kb on - strandat 489.884 kb on - strandat 489.884 kb on - strandat 489.884 kb on - strandat 489.884 kb on - strandat 489.884 kb on - strandat 489.884 kb on - strandat 490.098 kb on + strand, within Pf1N1B4_421at 490.099 kb on - strandat 490.099 kb on - strand, within Pf1N1B4_421at 490.149 kb on + strand, within Pf1N1B4_421at 490.149 kb on + strand, within Pf1N1B4_421at 490.149 kb on + strand, within Pf1N1B4_421at 490.149 kb on + strand, within Pf1N1B4_421at 490.149 kb on + strand, within Pf1N1B4_421at 490.150 kb on - strand, within Pf1N1B4_421at 490.150 kb on - strand, within Pf1N1B4_421at 490.150 kb on - strand, within Pf1N1B4_421at 490.150 kb on - strand, within Pf1N1B4_421at 490.150 kb on - strandat 490.159 kb on - strand, within Pf1N1B4_421at 490.262 kb on + strandat 490.262 kb on + strandat 490.262 kb on + strandat 490.263 kb on - strandat 490.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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488,880 + -0.2
488,880 + +0.3
488,880 + -1.7
488,930 + +0.1
488,956 + -0.2
488,957 - -0.7
488,962 + -0.0
488,962 + -1.2
488,962 + +2.4
489,071 - -0.2
489,146 - +0.5
489,189 + Pf1N1B4_420 0.15 -0.2
489,190 - Pf1N1B4_420 0.15 +1.6
489,190 - Pf1N1B4_420 0.15 -0.3
489,190 - Pf1N1B4_420 0.15 -0.4
489,190 - Pf1N1B4_420 0.15 +0.4
489,190 - Pf1N1B4_420 0.15 +0.6
489,193 + Pf1N1B4_420 0.16 +0.1
489,194 - Pf1N1B4_420 0.16 +1.3
489,194 - Pf1N1B4_420 0.16 -0.2
489,194 - Pf1N1B4_420 0.16 -2.0
489,194 - Pf1N1B4_420 0.16 +0.3
489,277 - Pf1N1B4_420 0.26 +1.3
489,277 - Pf1N1B4_420 0.26 +1.1
489,343 + Pf1N1B4_420 0.35 -0.4
489,343 + Pf1N1B4_420 0.35 -0.2
489,344 - Pf1N1B4_420 0.35 -0.5
489,344 - Pf1N1B4_420 0.35 -0.3
489,344 - Pf1N1B4_420 0.35 +0.5
489,344 - Pf1N1B4_420 0.35 -1.0
489,344 - Pf1N1B4_420 0.35 -1.2
489,344 - Pf1N1B4_420 0.35 -0.4
489,346 + Pf1N1B4_420 0.35 -1.3
489,347 - Pf1N1B4_420 0.35 +1.4
489,468 - +0.8
489,468 - Pf1N1B4_420 0.50 +0.2
489,556 + Pf1N1B4_420 0.61 +1.4
489,556 + Pf1N1B4_420 0.61 +2.3
489,562 + Pf1N1B4_420 0.62 +0.3
489,563 - Pf1N1B4_420 0.62 +0.6
489,563 - Pf1N1B4_420 0.62 +0.3
489,589 - Pf1N1B4_420 0.66 +0.6
489,835 - +1.6
489,835 - +0.7
489,835 - +0.1
489,852 + +1.6
489,860 + +0.4
489,861 - +0.1
489,861 - +1.8
489,861 - +0.2
489,876 + +0.8
489,876 + -0.2
489,876 + +1.8
489,876 + +0.3
489,877 - -0.7
489,877 - -0.6
489,877 - -1.5
489,877 - +0.1
489,877 - +0.8
489,877 - +1.0
489,877 - -2.2
489,877 - -1.0
489,877 - +1.4
489,877 - +4.0
489,883 + +0.5
489,883 + +0.8
489,883 + -1.7
489,883 + +0.2
489,883 + -0.4
489,884 - -0.9
489,884 - +0.4
489,884 - -0.2
489,884 - +1.3
489,884 - -0.5
489,884 - +0.7
489,884 - +1.4
489,884 - +0.7
490,098 + Pf1N1B4_421 0.62 -0.2
490,099 - -0.2
490,099 - Pf1N1B4_421 0.63 -1.0
490,149 + Pf1N1B4_421 0.77 +0.5
490,149 + Pf1N1B4_421 0.77 -0.8
490,149 + Pf1N1B4_421 0.77 +0.2
490,149 + Pf1N1B4_421 0.77 +1.8
490,149 + Pf1N1B4_421 0.77 -1.7
490,150 - Pf1N1B4_421 0.77 -0.2
490,150 - Pf1N1B4_421 0.77 -1.4
490,150 - Pf1N1B4_421 0.77 -1.7
490,150 - Pf1N1B4_421 0.77 -0.2
490,150 - +0.4
490,159 - Pf1N1B4_421 0.80 -2.0
490,262 + -1.5
490,262 + -1.6
490,262 + -0.2
490,263 - -0.6
490,263 - +0.5

Or see this region's nucleotide sequence