Experiment: Mucin from porcine stomach type III 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03090 and HMPREF1058_RS03085 are separated by 180 nucleotides HMPREF1058_RS03085 and HMPREF1058_RS03080 are separated by 123 nucleotides
HMPREF1058_RS03090: HMPREF1058_RS03090 - trigger factor, at 13,022 to 14,377
_RS03090
HMPREF1058_RS03085: HMPREF1058_RS03085 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 14,558 to 15,229
_RS03085
HMPREF1058_RS03080: HMPREF1058_RS03080 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 15,353 to 16,603
_RS03080
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.611 kb on - strand, within HMPREF1058_RS03090 at 13.643 kb on - strand, within HMPREF1058_RS03090 at 13.675 kb on + strand, within HMPREF1058_RS03090 at 13.676 kb on - strand, within HMPREF1058_RS03090 at 13.723 kb on - strand, within HMPREF1058_RS03090 at 13.732 kb on - strand, within HMPREF1058_RS03090 at 13.763 kb on - strand, within HMPREF1058_RS03090 at 13.928 kb on - strand at 13.952 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.964 kb on - strand, within HMPREF1058_RS03090 at 14.116 kb on + strand, within HMPREF1058_RS03090 at 14.220 kb on + strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.323 kb on + strand at 14.328 kb on + strand at 14.347 kb on + strand at 14.376 kb on - strand at 14.379 kb on - strand at 14.387 kb on - strand at 14.461 kb on + strand at 14.761 kb on + strand, within HMPREF1058_RS03085 at 14.812 kb on + strand, within HMPREF1058_RS03085 at 14.814 kb on + strand, within HMPREF1058_RS03085 at 14.824 kb on + strand, within HMPREF1058_RS03085 at 15.129 kb on + strand, within HMPREF1058_RS03085 at 15.262 kb on - strand at 15.322 kb on + strand at 15.335 kb on + strand at 15.347 kb on + strand at 15.382 kb on + strand at 15.382 kb on + strand at 15.587 kb on + strand, within HMPREF1058_RS03080 at 15.679 kb on + strand, within HMPREF1058_RS03080 at 15.682 kb on - strand, within HMPREF1058_RS03080 at 15.872 kb on - strand, within HMPREF1058_RS03080 at 15.940 kb on + strand, within HMPREF1058_RS03080 at 15.952 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 16.158 kb on + strand, within HMPREF1058_RS03080 at 16.191 kb on + strand, within HMPREF1058_RS03080 at 16.214 kb on + strand, within HMPREF1058_RS03080 at 16.216 kb on + strand, within HMPREF1058_RS03080 at 16.217 kb on - strand, within HMPREF1058_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 5 mg/ml (C) remove 13,564 + HMPREF1058_RS03090 0.40 -0.2 13,564 + HMPREF1058_RS03090 0.40 -1.3 13,611 - HMPREF1058_RS03090 0.43 -1.9 13,643 - HMPREF1058_RS03090 0.46 -0.4 13,675 + HMPREF1058_RS03090 0.48 -0.6 13,676 - HMPREF1058_RS03090 0.48 +0.8 13,723 - HMPREF1058_RS03090 0.52 -1.1 13,732 - HMPREF1058_RS03090 0.52 +0.8 13,763 - HMPREF1058_RS03090 0.55 -0.9 13,928 - +2.6 13,952 + HMPREF1058_RS03090 0.69 -0.5 13,963 + HMPREF1058_RS03090 0.69 -2.2 13,963 + HMPREF1058_RS03090 0.69 +0.0 13,964 - HMPREF1058_RS03090 0.69 -0.8 14,116 + HMPREF1058_RS03090 0.81 +1.3 14,220 + HMPREF1058_RS03090 0.88 +0.3 14,229 - HMPREF1058_RS03090 0.89 +1.6 14,229 - HMPREF1058_RS03090 0.89 +1.2 14,323 + -0.3 14,328 + -0.5 14,347 + -0.5 14,376 - +1.0 14,379 - +0.3 14,387 - +1.3 14,461 + +1.0 14,761 + HMPREF1058_RS03085 0.30 -2.4 14,812 + HMPREF1058_RS03085 0.38 -0.6 14,814 + HMPREF1058_RS03085 0.38 -1.0 14,824 + HMPREF1058_RS03085 0.40 -2.2 15,129 + HMPREF1058_RS03085 0.85 -2.9 15,262 - -1.0 15,322 + -0.9 15,335 + +0.8 15,347 + +0.0 15,382 + -0.9 15,382 + -0.3 15,587 + HMPREF1058_RS03080 0.19 +0.2 15,679 + HMPREF1058_RS03080 0.26 -0.1 15,682 - HMPREF1058_RS03080 0.26 +1.4 15,872 - HMPREF1058_RS03080 0.41 +0.0 15,940 + HMPREF1058_RS03080 0.47 +0.0 15,952 + HMPREF1058_RS03080 0.48 +0.1 15,978 + HMPREF1058_RS03080 0.50 -0.3 15,978 + HMPREF1058_RS03080 0.50 -0.2 15,978 + HMPREF1058_RS03080 0.50 -0.5 16,158 + HMPREF1058_RS03080 0.64 -0.9 16,191 + HMPREF1058_RS03080 0.67 +0.3 16,214 + HMPREF1058_RS03080 0.69 +0.2 16,216 + HMPREF1058_RS03080 0.69 -0.2 16,217 - HMPREF1058_RS03080 0.69 +0.4
Or see this region's nucleotide sequence