Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00842

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00841 and CCNA_00842 are separated by 89 nucleotidesCCNA_00842 and CCNA_00843 are separated by 83 nucleotides CCNA_00841: CCNA_00841 - carboxylesterase type B, at 911,803 to 913,419 _00841 CCNA_00842: CCNA_00842 - hypothetical protein, at 913,509 to 915,233 _00842 CCNA_00843: CCNA_00843 - endo-beta-mannanase, at 915,317 to 916,645 _00843 Position (kb) 913 914 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 912.593 kb on + strand, within CCNA_00841at 912.593 kb on + strand, within CCNA_00841at 912.593 kb on + strand, within CCNA_00841at 912.594 kb on - strand, within CCNA_00841at 912.632 kb on + strand, within CCNA_00841at 912.632 kb on + strand, within CCNA_00841at 912.657 kb on + strand, within CCNA_00841at 912.674 kb on - strand, within CCNA_00841at 912.696 kb on - strand, within CCNA_00841at 912.706 kb on + strand, within CCNA_00841at 912.709 kb on - strand, within CCNA_00841at 912.714 kb on - strand, within CCNA_00841at 912.759 kb on - strand, within CCNA_00841at 912.765 kb on - strand, within CCNA_00841at 912.882 kb on - strand, within CCNA_00841at 912.897 kb on + strand, within CCNA_00841at 912.897 kb on + strand, within CCNA_00841at 912.916 kb on + strand, within CCNA_00841at 912.941 kb on + strand, within CCNA_00841at 913.061 kb on - strand, within CCNA_00841at 913.114 kb on - strand, within CCNA_00841at 913.125 kb on - strand, within CCNA_00841at 913.126 kb on - strand, within CCNA_00841at 913.126 kb on - strand, within CCNA_00841at 913.131 kb on + strand, within CCNA_00841at 913.133 kb on + strand, within CCNA_00841at 913.160 kb on + strand, within CCNA_00841at 913.168 kb on - strand, within CCNA_00841at 913.183 kb on - strand, within CCNA_00841at 913.183 kb on - strand, within CCNA_00841at 913.187 kb on + strand, within CCNA_00841at 913.187 kb on + strand, within CCNA_00841at 913.194 kb on + strand, within CCNA_00841at 913.195 kb on - strand, within CCNA_00841at 913.199 kb on + strand, within CCNA_00841at 913.211 kb on + strand, within CCNA_00841at 913.235 kb on + strand, within CCNA_00841at 913.244 kb on + strand, within CCNA_00841at 913.256 kb on + strand, within CCNA_00841at 913.256 kb on + strand, within CCNA_00841at 913.256 kb on + strand, within CCNA_00841at 913.353 kb on - strandat 913.388 kb on + strandat 913.519 kb on - strandat 913.555 kb on + strandat 913.641 kb on - strandat 913.691 kb on + strand, within CCNA_00842at 913.705 kb on + strand, within CCNA_00842at 913.707 kb on + strand, within CCNA_00842at 913.723 kb on - strand, within CCNA_00842at 913.723 kb on - strand, within CCNA_00842at 913.752 kb on + strand, within CCNA_00842at 913.786 kb on + strand, within CCNA_00842at 913.800 kb on + strand, within CCNA_00842at 913.801 kb on - strand, within CCNA_00842at 913.810 kb on + strand, within CCNA_00842at 913.817 kb on + strand, within CCNA_00842at 913.830 kb on + strand, within CCNA_00842at 913.830 kb on + strand, within CCNA_00842at 913.835 kb on + strand, within CCNA_00842at 913.835 kb on + strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.843 kb on - strand, within CCNA_00842at 913.843 kb on - strand, within CCNA_00842at 913.843 kb on - strand, within CCNA_00842at 913.858 kb on - strand, within CCNA_00842at 913.858 kb on - strand, within CCNA_00842at 913.869 kb on + strand, within CCNA_00842at 913.872 kb on - strand, within CCNA_00842at 913.881 kb on + strand, within CCNA_00842at 913.915 kb on + strand, within CCNA_00842at 913.934 kb on - strand, within CCNA_00842at 913.945 kb on + strand, within CCNA_00842at 913.990 kb on + strand, within CCNA_00842at 913.990 kb on - strand, within CCNA_00842at 913.995 kb on + strand, within CCNA_00842at 913.995 kb on + strand, within CCNA_00842at 914.000 kb on + strand, within CCNA_00842at 914.000 kb on + strand, within CCNA_00842at 914.003 kb on - strand, within CCNA_00842at 914.008 kb on - strand, within CCNA_00842at 914.018 kb on + strand, within CCNA_00842at 914.019 kb on + strand, within CCNA_00842at 914.027 kb on - strand, within CCNA_00842at 914.068 kb on + strand, within CCNA_00842at 914.076 kb on - strand, within CCNA_00842at 914.092 kb on - strand, within CCNA_00842at 914.120 kb on + strand, within CCNA_00842at 914.189 kb on - strand, within CCNA_00842at 914.199 kb on - strand, within CCNA_00842at 914.203 kb on + strand, within CCNA_00842at 914.204 kb on - strand, within CCNA_00842at 914.239 kb on + strand, within CCNA_00842at 914.247 kb on - strand, within CCNA_00842at 914.249 kb on + strand, within CCNA_00842at 914.266 kb on - strand, within CCNA_00842at 914.274 kb on + strand, within CCNA_00842at 914.330 kb on + strand, within CCNA_00842at 914.450 kb on - strand, within CCNA_00842at 914.545 kb on + strand, within CCNA_00842at 914.553 kb on - strand, within CCNA_00842at 914.556 kb on + strand, within CCNA_00842at 914.564 kb on - strand, within CCNA_00842at 914.566 kb on + strand, within CCNA_00842at 914.566 kb on + strand, within CCNA_00842at 914.573 kb on + strand, within CCNA_00842at 914.581 kb on - strand, within CCNA_00842at 914.600 kb on - strand, within CCNA_00842at 914.609 kb on + strand, within CCNA_00842at 914.622 kb on + strand, within CCNA_00842at 914.629 kb on + strand, within CCNA_00842at 914.629 kb on + strand, within CCNA_00842at 914.629 kb on + strand, within CCNA_00842at 914.630 kb on - strand, within CCNA_00842at 914.630 kb on - strand, within CCNA_00842at 914.630 kb on - strand, within CCNA_00842at 914.637 kb on - strand, within CCNA_00842at 914.637 kb on - strand, within CCNA_00842at 914.649 kb on + strand, within CCNA_00842at 914.654 kb on + strand, within CCNA_00842at 914.667 kb on - strand, within CCNA_00842at 914.667 kb on - strand, within CCNA_00842at 914.672 kb on - strand, within CCNA_00842at 914.724 kb on + strand, within CCNA_00842at 914.732 kb on - strand, within CCNA_00842at 914.732 kb on - strand, within CCNA_00842at 914.733 kb on + strand, within CCNA_00842at 914.740 kb on - strand, within CCNA_00842at 914.769 kb on + strand, within CCNA_00842at 914.774 kb on + strand, within CCNA_00842at 914.782 kb on - strand, within CCNA_00842at 914.787 kb on - strand, within CCNA_00842at 914.805 kb on + strand, within CCNA_00842at 914.806 kb on + strand, within CCNA_00842at 914.806 kb on + strand, within CCNA_00842at 914.860 kb on + strand, within CCNA_00842at 914.876 kb on + strand, within CCNA_00842at 914.876 kb on + strand, within CCNA_00842at 914.898 kb on + strand, within CCNA_00842at 914.899 kb on + strand, within CCNA_00842at 914.999 kb on - strand, within CCNA_00842at 915.021 kb on + strand, within CCNA_00842at 915.029 kb on - strand, within CCNA_00842at 915.060 kb on - strand, within CCNA_00842at 915.088 kb on - strandat 915.103 kb on + strandat 915.138 kb on + strandat 915.138 kb on + strandat 915.138 kb on + strandat 915.138 kb on + strandat 915.138 kb on + strandat 915.138 kb on + strandat 915.138 kb on + strandat 915.138 kb on + strandat 915.139 kb on + strandat 915.146 kb on - strandat 915.146 kb on - strandat 915.146 kb on - strandat 915.146 kb on - strandat 915.146 kb on - strandat 915.146 kb on - strandat 915.146 kb on - strandat 915.146 kb on - strandat 915.159 kb on - strandat 915.164 kb on - strandat 915.190 kb on - strandat 915.274 kb on + strandat 915.274 kb on + strandat 915.398 kb on + strandat 915.417 kb on - strandat 915.426 kb on + strandat 915.492 kb on + strand, within CCNA_00843at 915.493 kb on - strand, within CCNA_00843at 915.519 kb on + strand, within CCNA_00843at 915.547 kb on + strand, within CCNA_00843at 915.548 kb on + strand, within CCNA_00843at 915.556 kb on - strand, within CCNA_00843at 915.660 kb on + strand, within CCNA_00843at 915.668 kb on - strand, within CCNA_00843at 915.668 kb on - strand, within CCNA_00843at 915.690 kb on - strand, within CCNA_00843at 915.722 kb on + strand, within CCNA_00843at 915.730 kb on - strand, within CCNA_00843at 915.746 kb on + strand, within CCNA_00843at 915.750 kb on - strand, within CCNA_00843at 915.773 kb on - strand, within CCNA_00843at 915.778 kb on + strand, within CCNA_00843at 915.778 kb on - strand, within CCNA_00843at 915.826 kb on + strandat 915.827 kb on + strand, within CCNA_00843at 915.827 kb on + strand, within CCNA_00843at 915.827 kb on + strand, within CCNA_00843at 915.827 kb on + strand, within CCNA_00843at 915.835 kb on - strand, within CCNA_00843at 915.835 kb on - strand, within CCNA_00843at 915.835 kb on - strand, within CCNA_00843at 915.877 kb on - strand, within CCNA_00843at 915.901 kb on + strand, within CCNA_00843at 915.917 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.949 kb on + strand, within CCNA_00843at 915.957 kb on - strand, within CCNA_00843at 915.994 kb on + strand, within CCNA_00843at 915.998 kb on + strand, within CCNA_00843at 916.052 kb on + strand, within CCNA_00843at 916.060 kb on - strand, within CCNA_00843at 916.094 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strandat 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.142 kb on + strand, within CCNA_00843at 916.150 kb on - strand, within CCNA_00843at 916.150 kb on - strand, within CCNA_00843at 916.162 kb on + strand, within CCNA_00843at 916.198 kb on - strand, within CCNA_00843

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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912,593 + CCNA_00841 0.49 +0.8
912,593 + CCNA_00841 0.49 +0.8
912,593 + CCNA_00841 0.49 +0.2
912,594 - CCNA_00841 0.49 -1.3
912,632 + CCNA_00841 0.51 -2.6
912,632 + CCNA_00841 0.51 -2.0
912,657 + CCNA_00841 0.53 -0.9
912,674 - CCNA_00841 0.54 -1.2
912,696 - CCNA_00841 0.55 -1.4
912,706 + CCNA_00841 0.56 -0.7
912,709 - CCNA_00841 0.56 +0.7
912,714 - CCNA_00841 0.56 -1.4
912,759 - CCNA_00841 0.59 -0.2
912,765 - CCNA_00841 0.59 +3.1
912,882 - CCNA_00841 0.67 +0.9
912,897 + CCNA_00841 0.68 -0.5
912,897 + CCNA_00841 0.68 -0.6
912,916 + CCNA_00841 0.69 -0.3
912,941 + CCNA_00841 0.70 -0.9
913,061 - CCNA_00841 0.78 +0.0
913,114 - CCNA_00841 0.81 -0.2
913,125 - CCNA_00841 0.82 -0.3
913,126 - CCNA_00841 0.82 -0.1
913,126 - CCNA_00841 0.82 -1.0
913,131 + CCNA_00841 0.82 -0.8
913,133 + CCNA_00841 0.82 +0.7
913,160 + CCNA_00841 0.84 +0.0
913,168 - CCNA_00841 0.84 -1.3
913,183 - CCNA_00841 0.85 -2.6
913,183 - CCNA_00841 0.85 +0.9
913,187 + CCNA_00841 0.86 -1.7
913,187 + CCNA_00841 0.86 +1.4
913,194 + CCNA_00841 0.86 -1.7
913,195 - CCNA_00841 0.86 +0.3
913,199 + CCNA_00841 0.86 -1.8
913,211 + CCNA_00841 0.87 +0.8
913,235 + CCNA_00841 0.89 -0.1
913,244 + CCNA_00841 0.89 +1.2
913,256 + CCNA_00841 0.90 -0.1
913,256 + CCNA_00841 0.90 +0.2
913,256 + CCNA_00841 0.90 -1.4
913,353 - -1.1
913,388 + -0.6
913,519 - +1.8
913,555 + +0.4
913,641 - -1.5
913,691 + CCNA_00842 0.11 +0.3
913,705 + CCNA_00842 0.11 -0.8
913,707 + CCNA_00842 0.11 +0.7
913,723 - CCNA_00842 0.12 -0.4
913,723 - CCNA_00842 0.12 +1.1
913,752 + CCNA_00842 0.14 +0.3
913,786 + CCNA_00842 0.16 -1.3
913,800 + CCNA_00842 0.17 -0.7
913,801 - CCNA_00842 0.17 -2.1
913,810 + CCNA_00842 0.17 -0.6
913,817 + CCNA_00842 0.18 +0.2
913,830 + CCNA_00842 0.19 +0.7
913,830 + CCNA_00842 0.19 -1.0
913,835 + CCNA_00842 0.19 -2.1
913,835 + CCNA_00842 0.19 -2.1
913,838 - CCNA_00842 0.19 -0.3
913,838 - CCNA_00842 0.19 -0.3
913,838 - CCNA_00842 0.19 -0.7
913,843 - CCNA_00842 0.19 -0.6
913,843 - CCNA_00842 0.19 +0.4
913,843 - CCNA_00842 0.19 -1.1
913,858 - CCNA_00842 0.20 -0.4
913,858 - CCNA_00842 0.20 +0.5
913,869 + CCNA_00842 0.21 -0.1
913,872 - CCNA_00842 0.21 +0.4
913,881 + CCNA_00842 0.22 -0.6
913,915 + CCNA_00842 0.24 -0.2
913,934 - CCNA_00842 0.25 +0.8
913,945 + CCNA_00842 0.25 -0.9
913,990 + CCNA_00842 0.28 -0.6
913,990 - CCNA_00842 0.28 -0.7
913,995 + CCNA_00842 0.28 +0.2
913,995 + CCNA_00842 0.28 -2.8
914,000 + CCNA_00842 0.28 -2.0
914,000 + CCNA_00842 0.28 +1.7
914,003 - CCNA_00842 0.29 -0.1
914,008 - CCNA_00842 0.29 -0.8
914,018 + CCNA_00842 0.30 +0.3
914,019 + CCNA_00842 0.30 -1.6
914,027 - CCNA_00842 0.30 -0.7
914,068 + CCNA_00842 0.32 +1.1
914,076 - CCNA_00842 0.33 -1.6
914,092 - CCNA_00842 0.34 -0.0
914,120 + CCNA_00842 0.35 -1.3
914,189 - CCNA_00842 0.39 +0.6
914,199 - CCNA_00842 0.40 +0.9
914,203 + CCNA_00842 0.40 -0.8
914,204 - CCNA_00842 0.40 -0.2
914,239 + CCNA_00842 0.42 -2.0
914,247 - CCNA_00842 0.43 +0.1
914,249 + CCNA_00842 0.43 -0.7
914,266 - CCNA_00842 0.44 +1.7
914,274 + CCNA_00842 0.44 -0.6
914,330 + CCNA_00842 0.48 +0.8
914,450 - CCNA_00842 0.55 -1.4
914,545 + CCNA_00842 0.60 -1.1
914,553 - CCNA_00842 0.61 +0.6
914,556 + CCNA_00842 0.61 -1.5
914,564 - CCNA_00842 0.61 +0.6
914,566 + CCNA_00842 0.61 +0.3
914,566 + CCNA_00842 0.61 -0.3
914,573 + CCNA_00842 0.62 +1.5
914,581 - CCNA_00842 0.62 -1.4
914,600 - CCNA_00842 0.63 +0.4
914,609 + CCNA_00842 0.64 +0.9
914,622 + CCNA_00842 0.65 +0.4
914,629 + CCNA_00842 0.65 -0.8
914,629 + CCNA_00842 0.65 +1.3
914,629 + CCNA_00842 0.65 +0.9
914,630 - CCNA_00842 0.65 +1.2
914,630 - CCNA_00842 0.65 -0.1
914,630 - CCNA_00842 0.65 -0.1
914,637 - CCNA_00842 0.65 -1.0
914,637 - CCNA_00842 0.65 +0.1
914,649 + CCNA_00842 0.66 +0.2
914,654 + CCNA_00842 0.66 -1.6
914,667 - CCNA_00842 0.67 +1.0
914,667 - CCNA_00842 0.67 +2.3
914,672 - CCNA_00842 0.67 -2.3
914,724 + CCNA_00842 0.70 -0.3
914,732 - CCNA_00842 0.71 +0.9
914,732 - CCNA_00842 0.71 +0.4
914,733 + CCNA_00842 0.71 -0.7
914,740 - CCNA_00842 0.71 -0.8
914,769 + CCNA_00842 0.73 -2.3
914,774 + CCNA_00842 0.73 -1.5
914,782 - CCNA_00842 0.74 -0.5
914,787 - CCNA_00842 0.74 +0.5
914,805 + CCNA_00842 0.75 -0.5
914,806 + CCNA_00842 0.75 -1.1
914,806 + CCNA_00842 0.75 +0.8
914,860 + CCNA_00842 0.78 -1.3
914,876 + CCNA_00842 0.79 -0.4
914,876 + CCNA_00842 0.79 -1.7
914,898 + CCNA_00842 0.81 -0.9
914,899 + CCNA_00842 0.81 -1.3
914,999 - CCNA_00842 0.86 -1.1
915,021 + CCNA_00842 0.88 -1.4
915,029 - CCNA_00842 0.88 -0.3
915,060 - CCNA_00842 0.90 -1.1
915,088 - -0.0
915,103 + -0.6
915,138 + +0.1
915,138 + -1.0
915,138 + -1.2
915,138 + -2.1
915,138 + -0.3
915,138 + -0.6
915,138 + -0.3
915,138 + +0.0
915,139 + -0.8
915,146 - -0.4
915,146 - -1.9
915,146 - -0.9
915,146 - -0.3
915,146 - -0.5
915,146 - -1.1
915,146 - -2.0
915,146 - -1.0
915,159 - -0.8
915,164 - +0.6
915,190 - -0.1
915,274 + -1.3
915,274 + +0.7
915,398 + +0.5
915,417 - -0.3
915,426 + -1.3
915,492 + CCNA_00843 0.13 -1.5
915,493 - CCNA_00843 0.13 -0.3
915,519 + CCNA_00843 0.15 -0.2
915,547 + CCNA_00843 0.17 -0.1
915,548 + CCNA_00843 0.17 -0.0
915,556 - CCNA_00843 0.18 -2.7
915,660 + CCNA_00843 0.26 +0.5
915,668 - CCNA_00843 0.26 -1.7
915,668 - CCNA_00843 0.26 +0.9
915,690 - CCNA_00843 0.28 -0.8
915,722 + CCNA_00843 0.30 -2.5
915,730 - CCNA_00843 0.31 -0.9
915,746 + CCNA_00843 0.32 +0.6
915,750 - CCNA_00843 0.33 -0.2
915,773 - CCNA_00843 0.34 -2.7
915,778 + CCNA_00843 0.35 +0.7
915,778 - CCNA_00843 0.35 -1.7
915,826 + +1.5
915,827 + CCNA_00843 0.38 -0.1
915,827 + CCNA_00843 0.38 -0.2
915,827 + CCNA_00843 0.38 +0.2
915,827 + CCNA_00843 0.38 -1.2
915,835 - CCNA_00843 0.39 -0.7
915,835 - CCNA_00843 0.39 -0.7
915,835 - CCNA_00843 0.39 +0.1
915,877 - CCNA_00843 0.42 +0.7
915,901 + CCNA_00843 0.44 +0.6
915,917 + CCNA_00843 0.45 +0.3
915,949 + CCNA_00843 0.48 -0.9
915,949 + CCNA_00843 0.48 +0.0
915,949 + CCNA_00843 0.48 +0.7
915,949 + CCNA_00843 0.48 -1.1
915,949 + CCNA_00843 0.48 -1.5
915,949 + CCNA_00843 0.48 +1.1
915,949 + CCNA_00843 0.48 -0.0
915,949 + CCNA_00843 0.48 -0.5
915,949 + CCNA_00843 0.48 -0.1
915,957 - CCNA_00843 0.48 -0.2
915,994 + CCNA_00843 0.51 -0.8
915,998 + CCNA_00843 0.51 -0.7
916,052 + CCNA_00843 0.55 -2.5
916,060 - CCNA_00843 0.56 -0.8
916,094 + CCNA_00843 0.58 -0.9
916,104 + CCNA_00843 0.59 +0.2
916,104 + CCNA_00843 0.59 -1.2
916,104 + CCNA_00843 0.59 -0.3
916,104 + CCNA_00843 0.59 -1.7
916,104 + +0.5
916,104 + CCNA_00843 0.59 -2.1
916,104 + CCNA_00843 0.59 -0.3
916,104 + CCNA_00843 0.59 -0.3
916,112 - CCNA_00843 0.60 -0.3
916,112 - CCNA_00843 0.60 -0.1
916,112 - CCNA_00843 0.60 -0.8
916,112 - CCNA_00843 0.60 -0.1
916,112 - CCNA_00843 0.60 +1.0
916,112 - CCNA_00843 0.60 -1.0
916,112 - CCNA_00843 0.60 +0.1
916,142 + CCNA_00843 0.62 -0.6
916,150 - CCNA_00843 0.63 -0.4
916,150 - CCNA_00843 0.63 -0.1
916,162 + CCNA_00843 0.64 -0.2
916,198 - CCNA_00843 0.66 -1.5

Or see this region's nucleotide sequence