Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18380

Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS18375 and CA265_RS18380 are separated by 45 nucleotidesCA265_RS18380 and CA265_RS18385 are separated by 27 nucleotides CA265_RS18375: CA265_RS18375 - twin-arginine translocase subunit TatC, at 4,573,896 to 4,574,777 _RS18375 CA265_RS18380: CA265_RS18380 - ribose 5-phosphate isomerase B, at 4,574,823 to 4,575,260 _RS18380 CA265_RS18385: CA265_RS18385 - peptidase, at 4,575,288 to 4,576,922 _RS18385 Position (kb) 4574 4575 4576Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4573.824 kb on - strandat 4573.828 kb on + strandat 4574.771 kb on + strandat 4574.801 kb on - strandat 4574.931 kb on - strand, within CA265_RS18380at 4574.934 kb on + strand, within CA265_RS18380at 4575.050 kb on + strand, within CA265_RS18380at 4575.051 kb on - strand, within CA265_RS18380at 4575.086 kb on - strand, within CA265_RS18380at 4575.142 kb on + strand, within CA265_RS18380at 4575.143 kb on - strand, within CA265_RS18380at 4575.146 kb on + strand, within CA265_RS18380at 4575.271 kb on - strandat 4575.271 kb on - strandat 4575.279 kb on - strandat 4575.279 kb on - strandat 4575.365 kb on - strandat 4575.402 kb on - strandat 4575.418 kb on - strandat 4575.541 kb on + strand, within CA265_RS18385at 4575.601 kb on + strand, within CA265_RS18385at 4575.602 kb on - strand, within CA265_RS18385at 4575.677 kb on + strand, within CA265_RS18385at 4575.733 kb on - strand, within CA265_RS18385at 4575.733 kb on - strand, within CA265_RS18385at 4575.864 kb on + strand, within CA265_RS18385at 4575.865 kb on - strand, within CA265_RS18385at 4575.885 kb on - strand, within CA265_RS18385at 4575.961 kb on + strand, within CA265_RS18385at 4575.961 kb on + strand, within CA265_RS18385at 4575.962 kb on - strand, within CA265_RS18385at 4576.036 kb on + strand, within CA265_RS18385at 4576.052 kb on - strand, within CA265_RS18385at 4576.052 kb on - strand, within CA265_RS18385at 4576.082 kb on - strand, within CA265_RS18385at 4576.096 kb on + strand, within CA265_RS18385at 4576.133 kb on - strand, within CA265_RS18385at 4576.231 kb on + strandat 4576.231 kb on + strand, within CA265_RS18385at 4576.232 kb on - strand, within CA265_RS18385at 4576.232 kb on - strand, within CA265_RS18385

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml
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4,573,824 - +0.2
4,573,828 + -0.3
4,574,771 + +1.0
4,574,801 - +1.4
4,574,931 - CA265_RS18380 0.25 +2.1
4,574,934 + CA265_RS18380 0.25 +0.5
4,575,050 + CA265_RS18380 0.52 +0.4
4,575,051 - CA265_RS18380 0.52 -0.3
4,575,086 - CA265_RS18380 0.60 +1.1
4,575,142 + CA265_RS18380 0.73 -0.3
4,575,143 - CA265_RS18380 0.73 +1.1
4,575,146 + CA265_RS18380 0.74 -0.3
4,575,271 - -0.2
4,575,271 - +0.3
4,575,279 - +0.7
4,575,279 - +0.0
4,575,365 - +0.9
4,575,402 - -1.6
4,575,418 - -2.2
4,575,541 + CA265_RS18385 0.15 +0.9
4,575,601 + CA265_RS18385 0.19 +0.2
4,575,602 - CA265_RS18385 0.19 -0.3
4,575,677 + CA265_RS18385 0.24 +0.7
4,575,733 - CA265_RS18385 0.27 -0.4
4,575,733 - CA265_RS18385 0.27 -1.3
4,575,864 + CA265_RS18385 0.35 +3.2
4,575,865 - CA265_RS18385 0.35 +0.6
4,575,885 - CA265_RS18385 0.37 -0.1
4,575,961 + CA265_RS18385 0.41 -0.4
4,575,961 + CA265_RS18385 0.41 +1.1
4,575,962 - CA265_RS18385 0.41 +0.3
4,576,036 + CA265_RS18385 0.46 +0.4
4,576,052 - CA265_RS18385 0.47 -0.9
4,576,052 - CA265_RS18385 0.47 +0.5
4,576,082 - CA265_RS18385 0.49 +0.2
4,576,096 + CA265_RS18385 0.49 -1.0
4,576,133 - CA265_RS18385 0.52 +0.5
4,576,231 + +2.2
4,576,231 + CA265_RS18385 0.58 -0.2
4,576,232 - CA265_RS18385 0.58 -0.9
4,576,232 - CA265_RS18385 0.58 -1.2

Or see this region's nucleotide sequence