Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS16710 and CA265_RS16715 are separated by 5 nucleotides CA265_RS16715 and CA265_RS16720 are separated by 94 nucleotides CA265_RS16720 and CA265_RS16725 are separated by 11 nucleotides CA265_RS16725 and CA265_RS16730 are separated by 124 nucleotides
CA265_RS16710: CA265_RS16710 - molecular chaperone DnaJ, at 4,195,307 to 4,196,200
_RS16710
CA265_RS16715: CA265_RS16715 - hypothetical protein, at 4,196,206 to 4,196,511
_RS16715
CA265_RS16720: CA265_RS16720 - ATPase, at 4,196,606 to 4,198,180
_RS16720
CA265_RS16725: CA265_RS16725 - hypothetical protein, at 4,198,192 to 4,198,479
_RS16725
CA265_RS16730: CA265_RS16730 - nucleotidyltransferase, at 4,198,604 to 4,199,503
_RS16730
Position (kb) 4196
4197
4198
4199 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4195.608 kb on - strand, within CA265_RS16710 at 4195.710 kb on - strand, within CA265_RS16710 at 4195.750 kb on + strand, within CA265_RS16710 at 4195.751 kb on - strand, within CA265_RS16710 at 4195.773 kb on + strand, within CA265_RS16710 at 4195.796 kb on - strand, within CA265_RS16710 at 4195.796 kb on - strand, within CA265_RS16710 at 4195.860 kb on + strand, within CA265_RS16710 at 4195.886 kb on + strand, within CA265_RS16710 at 4195.887 kb on - strand, within CA265_RS16710 at 4195.887 kb on - strand, within CA265_RS16710 at 4195.903 kb on + strand, within CA265_RS16710 at 4195.943 kb on + strand, within CA265_RS16710 at 4195.959 kb on + strand, within CA265_RS16710 at 4195.960 kb on - strand, within CA265_RS16710 at 4195.965 kb on + strand, within CA265_RS16710 at 4195.965 kb on + strand, within CA265_RS16710 at 4195.966 kb on - strand, within CA265_RS16710 at 4195.966 kb on - strand, within CA265_RS16710 at 4195.966 kb on - strand, within CA265_RS16710 at 4195.966 kb on - strand, within CA265_RS16710 at 4195.966 kb on - strand, within CA265_RS16710 at 4195.966 kb on - strand, within CA265_RS16710 at 4195.966 kb on - strand, within CA265_RS16710 at 4195.970 kb on - strand, within CA265_RS16710 at 4195.970 kb on - strand, within CA265_RS16710 at 4196.007 kb on + strand, within CA265_RS16710 at 4196.118 kb on + strand at 4196.120 kb on + strand at 4196.122 kb on + strand at 4196.122 kb on + strand at 4196.175 kb on + strand at 4196.255 kb on + strand, within CA265_RS16715 at 4196.256 kb on - strand, within CA265_RS16715 at 4196.262 kb on + strand, within CA265_RS16715 at 4196.396 kb on + strand, within CA265_RS16715 at 4196.436 kb on - strand, within CA265_RS16715 at 4196.505 kb on + strand at 4196.506 kb on - strand at 4196.528 kb on - strand at 4196.594 kb on + strand at 4196.594 kb on + strand at 4196.594 kb on + strand at 4196.659 kb on + strand at 4196.669 kb on + strand at 4196.670 kb on - strand at 4196.726 kb on - strand at 4196.806 kb on - strand, within CA265_RS16720 at 4197.037 kb on - strand, within CA265_RS16720 at 4197.054 kb on + strand, within CA265_RS16720 at 4197.076 kb on + strand, within CA265_RS16720 at 4197.129 kb on + strand, within CA265_RS16720 at 4197.130 kb on - strand, within CA265_RS16720 at 4197.155 kb on + strand, within CA265_RS16720 at 4197.193 kb on + strand, within CA265_RS16720 at 4197.198 kb on - strand, within CA265_RS16720 at 4197.198 kb on - strand, within CA265_RS16720 at 4197.198 kb on - strand, within CA265_RS16720 at 4197.231 kb on + strand, within CA265_RS16720 at 4197.231 kb on + strand, within CA265_RS16720 at 4197.232 kb on - strand, within CA265_RS16720 at 4197.268 kb on - strand, within CA265_RS16720 at 4197.268 kb on - strand, within CA265_RS16720 at 4197.274 kb on + strand, within CA265_RS16720 at 4197.353 kb on - strand, within CA265_RS16720 at 4197.353 kb on - strand, within CA265_RS16720 at 4197.378 kb on + strand, within CA265_RS16720 at 4197.381 kb on + strand, within CA265_RS16720 at 4197.383 kb on + strand, within CA265_RS16720 at 4197.388 kb on + strand, within CA265_RS16720 at 4197.405 kb on + strand, within CA265_RS16720 at 4197.406 kb on - strand, within CA265_RS16720 at 4197.418 kb on - strand, within CA265_RS16720 at 4197.490 kb on - strand, within CA265_RS16720 at 4197.636 kb on + strand, within CA265_RS16720 at 4197.648 kb on + strand, within CA265_RS16720 at 4197.658 kb on + strand, within CA265_RS16720 at 4197.658 kb on + strand, within CA265_RS16720 at 4197.658 kb on + strand, within CA265_RS16720 at 4197.658 kb on + strand, within CA265_RS16720 at 4197.659 kb on - strand, within CA265_RS16720 at 4197.698 kb on - strand, within CA265_RS16720 at 4197.698 kb on - strand, within CA265_RS16720 at 4197.850 kb on + strand, within CA265_RS16720 at 4197.850 kb on + strand, within CA265_RS16720 at 4197.896 kb on - strand, within CA265_RS16720 at 4197.898 kb on + strand, within CA265_RS16720 at 4197.898 kb on + strand, within CA265_RS16720 at 4197.899 kb on - strand, within CA265_RS16720 at 4197.899 kb on - strand, within CA265_RS16720 at 4197.903 kb on - strand, within CA265_RS16720 at 4197.903 kb on - strand, within CA265_RS16720 at 4197.937 kb on + strand, within CA265_RS16720 at 4198.034 kb on - strand at 4198.130 kb on - strand at 4198.130 kb on - strand at 4198.179 kb on - strand at 4198.187 kb on + strand at 4198.198 kb on + strand at 4198.199 kb on - strand at 4198.199 kb on - strand at 4198.255 kb on - strand, within CA265_RS16725 at 4198.328 kb on + strand, within CA265_RS16725 at 4198.329 kb on - strand, within CA265_RS16725 at 4198.400 kb on - strand, within CA265_RS16725 at 4198.402 kb on - strand, within CA265_RS16725 at 4198.407 kb on - strand, within CA265_RS16725 at 4198.407 kb on - strand, within CA265_RS16725 at 4198.407 kb on - strand, within CA265_RS16725 at 4198.407 kb on - strand, within CA265_RS16725 at 4198.417 kb on - strand, within CA265_RS16725 at 4198.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml remove 4,195,608 - CA265_RS16710 0.34 -1.9 4,195,710 - CA265_RS16710 0.45 +1.5 4,195,750 + CA265_RS16710 0.50 +0.5 4,195,751 - CA265_RS16710 0.50 +0.3 4,195,773 + CA265_RS16710 0.52 -0.5 4,195,796 - CA265_RS16710 0.55 +0.3 4,195,796 - CA265_RS16710 0.55 +0.2 4,195,860 + CA265_RS16710 0.62 +0.5 4,195,886 + CA265_RS16710 0.65 -0.5 4,195,887 - CA265_RS16710 0.65 -0.3 4,195,887 - CA265_RS16710 0.65 -1.1 4,195,903 + CA265_RS16710 0.67 -0.4 4,195,943 + CA265_RS16710 0.71 -1.3 4,195,959 + CA265_RS16710 0.73 -0.3 4,195,960 - CA265_RS16710 0.73 -0.8 4,195,965 + CA265_RS16710 0.74 -0.3 4,195,965 + CA265_RS16710 0.74 -0.1 4,195,966 - CA265_RS16710 0.74 -0.2 4,195,966 - CA265_RS16710 0.74 -0.0 4,195,966 - CA265_RS16710 0.74 -0.6 4,195,966 - CA265_RS16710 0.74 -0.1 4,195,966 - CA265_RS16710 0.74 -0.8 4,195,966 - CA265_RS16710 0.74 +1.9 4,195,966 - CA265_RS16710 0.74 -1.1 4,195,970 - CA265_RS16710 0.74 -0.0 4,195,970 - CA265_RS16710 0.74 -0.1 4,196,007 + CA265_RS16710 0.78 +1.0 4,196,118 + -0.4 4,196,120 + -0.6 4,196,122 + -0.1 4,196,122 + +0.6 4,196,175 + -1.3 4,196,255 + CA265_RS16715 0.16 +0.7 4,196,256 - CA265_RS16715 0.16 -0.2 4,196,262 + CA265_RS16715 0.18 +0.3 4,196,396 + CA265_RS16715 0.62 -1.1 4,196,436 - CA265_RS16715 0.75 -2.3 4,196,505 + +0.4 4,196,506 - -0.6 4,196,528 - -0.5 4,196,594 + -2.2 4,196,594 + +0.1 4,196,594 + +0.2 4,196,659 + -0.8 4,196,669 + -0.2 4,196,670 - +0.6 4,196,726 - +0.5 4,196,806 - CA265_RS16720 0.13 -0.9 4,197,037 - CA265_RS16720 0.27 +0.5 4,197,054 + CA265_RS16720 0.28 +0.3 4,197,076 + CA265_RS16720 0.30 +0.3 4,197,129 + CA265_RS16720 0.33 +0.9 4,197,130 - CA265_RS16720 0.33 -0.7 4,197,155 + CA265_RS16720 0.35 -0.5 4,197,193 + CA265_RS16720 0.37 +0.2 4,197,198 - CA265_RS16720 0.38 -2.1 4,197,198 - CA265_RS16720 0.38 -0.5 4,197,198 - CA265_RS16720 0.38 -0.4 4,197,231 + CA265_RS16720 0.40 -0.1 4,197,231 + CA265_RS16720 0.40 -0.5 4,197,232 - CA265_RS16720 0.40 -0.2 4,197,268 - CA265_RS16720 0.42 -0.8 4,197,268 - CA265_RS16720 0.42 +0.3 4,197,274 + CA265_RS16720 0.42 +0.6 4,197,353 - CA265_RS16720 0.47 -0.4 4,197,353 - CA265_RS16720 0.47 -2.6 4,197,378 + CA265_RS16720 0.49 -0.2 4,197,381 + CA265_RS16720 0.49 +0.1 4,197,383 + CA265_RS16720 0.49 -0.1 4,197,388 + CA265_RS16720 0.50 +1.9 4,197,405 + CA265_RS16720 0.51 +0.3 4,197,406 - CA265_RS16720 0.51 -0.1 4,197,418 - CA265_RS16720 0.52 -0.2 4,197,490 - CA265_RS16720 0.56 -0.3 4,197,636 + CA265_RS16720 0.65 -0.8 4,197,648 + CA265_RS16720 0.66 +0.3 4,197,658 + CA265_RS16720 0.67 +1.6 4,197,658 + CA265_RS16720 0.67 +1.0 4,197,658 + CA265_RS16720 0.67 -0.1 4,197,658 + CA265_RS16720 0.67 +0.7 4,197,659 - CA265_RS16720 0.67 -1.0 4,197,698 - CA265_RS16720 0.69 -0.4 4,197,698 - CA265_RS16720 0.69 -1.0 4,197,850 + CA265_RS16720 0.79 -0.2 4,197,850 + CA265_RS16720 0.79 +0.2 4,197,896 - CA265_RS16720 0.82 -0.1 4,197,898 + CA265_RS16720 0.82 -0.7 4,197,898 + CA265_RS16720 0.82 -1.8 4,197,899 - CA265_RS16720 0.82 -0.5 4,197,899 - CA265_RS16720 0.82 +1.2 4,197,903 - CA265_RS16720 0.82 -2.4 4,197,903 - CA265_RS16720 0.82 -0.3 4,197,937 + CA265_RS16720 0.85 +0.9 4,198,034 - +1.0 4,198,130 - +0.1 4,198,130 - +0.3 4,198,179 - +0.2 4,198,187 + +1.4 4,198,198 + -0.8 4,198,199 - -0.8 4,198,199 - +1.2 4,198,255 - CA265_RS16725 0.22 -0.3 4,198,328 + CA265_RS16725 0.47 +0.3 4,198,329 - CA265_RS16725 0.48 +0.3 4,198,400 - CA265_RS16725 0.72 -0.5 4,198,402 - CA265_RS16725 0.73 -0.7 4,198,407 - CA265_RS16725 0.75 -0.6 4,198,407 - CA265_RS16725 0.75 -0.6 4,198,407 - CA265_RS16725 0.75 -1.7 4,198,407 - CA265_RS16725 0.75 -1.3 4,198,417 - CA265_RS16725 0.78 -0.2 4,198,463 - -0.8
Or see this region's nucleotide sequence