Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS11630 and CA265_RS11635 are separated by 127 nucleotides CA265_RS11635 and CA265_RS11640 are separated by 224 nucleotides
CA265_RS11630: CA265_RS11630 - prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) , at 2,883,512 to 2,884,345
_RS11630
CA265_RS11635: CA265_RS11635 - chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) , at 2,884,473 to 2,885,612
_RS11635
CA265_RS11640: CA265_RS11640 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,885,837 to 2,887,105
_RS11640
Position (kb)
2884
2885
2886 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2883.548 kb on - strand at 2883.589 kb on + strand at 2883.643 kb on - strand, within CA265_RS11630 at 2883.669 kb on + strand, within CA265_RS11630 at 2883.669 kb on + strand, within CA265_RS11630 at 2883.714 kb on - strand, within CA265_RS11630 at 2883.714 kb on - strand, within CA265_RS11630 at 2883.781 kb on - strand, within CA265_RS11630 at 2883.781 kb on - strand, within CA265_RS11630 at 2883.814 kb on + strand, within CA265_RS11630 at 2883.815 kb on - strand, within CA265_RS11630 at 2883.824 kb on - strand, within CA265_RS11630 at 2884.055 kb on - strand, within CA265_RS11630 at 2884.147 kb on - strand, within CA265_RS11630 at 2884.170 kb on + strand, within CA265_RS11630 at 2884.170 kb on + strand, within CA265_RS11630 at 2884.171 kb on - strand, within CA265_RS11630 at 2884.171 kb on - strand, within CA265_RS11630 at 2884.171 kb on - strand, within CA265_RS11630 at 2884.171 kb on - strand, within CA265_RS11630 at 2884.192 kb on + strand, within CA265_RS11630 at 2884.193 kb on - strand, within CA265_RS11630 at 2884.223 kb on + strand, within CA265_RS11630 at 2884.240 kb on - strand, within CA265_RS11630 at 2884.294 kb on + strand at 2884.323 kb on - strand at 2884.401 kb on - strand at 2885.305 kb on + strand, within CA265_RS11635 at 2885.306 kb on - strand at 2885.335 kb on + strand, within CA265_RS11635 at 2885.335 kb on + strand, within CA265_RS11635 at 2885.335 kb on + strand, within CA265_RS11635 at 2885.335 kb on + strand, within CA265_RS11635 at 2885.412 kb on - strand, within CA265_RS11635 at 2885.479 kb on + strand, within CA265_RS11635 at 2885.594 kb on + strand at 2885.594 kb on + strand at 2885.610 kb on + strand at 2885.610 kb on + strand at 2885.701 kb on - strand at 2885.701 kb on - strand at 2885.735 kb on + strand at 2885.764 kb on + strand at 2885.767 kb on - strand at 2885.777 kb on + strand at 2885.780 kb on - strand at 2885.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml remove 2,883,548 - -2.1 2,883,589 + +0.9 2,883,643 - CA265_RS11630 0.16 +0.9 2,883,669 + CA265_RS11630 0.19 -0.6 2,883,669 + CA265_RS11630 0.19 -0.0 2,883,714 - CA265_RS11630 0.24 -0.5 2,883,714 - CA265_RS11630 0.24 +2.8 2,883,781 - CA265_RS11630 0.32 -1.8 2,883,781 - CA265_RS11630 0.32 -0.6 2,883,814 + CA265_RS11630 0.36 +0.1 2,883,815 - CA265_RS11630 0.36 -0.6 2,883,824 - CA265_RS11630 0.37 +0.0 2,884,055 - CA265_RS11630 0.65 -0.3 2,884,147 - CA265_RS11630 0.76 +0.1 2,884,170 + CA265_RS11630 0.79 -1.0 2,884,170 + CA265_RS11630 0.79 +1.0 2,884,171 - CA265_RS11630 0.79 +0.5 2,884,171 - CA265_RS11630 0.79 +0.9 2,884,171 - CA265_RS11630 0.79 -0.4 2,884,171 - CA265_RS11630 0.79 +0.6 2,884,192 + CA265_RS11630 0.82 -0.3 2,884,193 - CA265_RS11630 0.82 +0.7 2,884,223 + CA265_RS11630 0.85 +0.9 2,884,240 - CA265_RS11630 0.87 -1.1 2,884,294 + +0.5 2,884,323 - -0.0 2,884,401 - +1.3 2,885,305 + CA265_RS11635 0.73 +0.5 2,885,306 - +2.2 2,885,335 + CA265_RS11635 0.76 +0.3 2,885,335 + CA265_RS11635 0.76 +0.7 2,885,335 + CA265_RS11635 0.76 +2.2 2,885,335 + CA265_RS11635 0.76 +0.7 2,885,412 - CA265_RS11635 0.82 +2.7 2,885,479 + CA265_RS11635 0.88 -0.2 2,885,594 + +0.4 2,885,594 + +1.4 2,885,610 + -0.7 2,885,610 + +0.5 2,885,701 - -0.5 2,885,701 - -0.8 2,885,735 + +0.2 2,885,764 + +0.6 2,885,767 - +1.2 2,885,777 + +1.1 2,885,780 - +0.7 2,885,810 + -0.7
Or see this region's nucleotide sequence