Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06815

Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Thallium(I) acetate 0.0001 mg/ml
1,688,843	-		CA265_RS06810	0.31	-0.5
1,688,910	-		CA265_RS06810	0.36	+1.4
1,688,972	+		CA265_RS06810	0.41	+0.4
1,688,999	+		CA265_RS06810	0.43	-0.2
1,689,005	+		CA265_RS06810	0.43	-0.6
1,689,005	+		CA265_RS06810	0.43	-0.6
1,689,006	-		CA265_RS06810	0.43	+1.1
1,689,033	+		CA265_RS06810	0.45	-1.2
1,689,033	+		CA265_RS06810	0.45	+0.6
1,689,034	-		CA265_RS06810	0.45	+0.4
1,689,060	-		CA265_RS06810	0.47	-2.3
1,689,092	-		CA265_RS06810	0.50	-0.4
1,689,132	+		CA265_RS06810	0.53	-0.7
1,689,132	+		CA265_RS06810	0.53	-1.5
1,689,207	-		CA265_RS06810	0.58	-0.8
1,689,237	+		CA265_RS06810	0.61	+0.6
1,689,256	-		CA265_RS06810	0.62	+0.6
1,689,327	-		CA265_RS06810	0.67	-0.6
1,689,384	-		CA265_RS06810	0.72	-0.1
1,689,421	-		CA265_RS06810	0.74	-0.8
1,689,423	-		CA265_RS06810	0.75	+0.2
1,689,510	-		CA265_RS06810	0.81	+1.2
1,689,553	-		CA265_RS06810	0.84	-0.4
1,689,573	-		CA265_RS06810	0.86	+0.3
1,689,585	-		CA265_RS06810	0.87	+0.5
1,689,596	+		CA265_RS06810	0.88	+0.1
1,689,597	-		CA265_RS06810	0.88	+0.1
1,689,605	+		CA265_RS06810	0.88	+1.7
1,689,654	+				-1.5
1,689,654	+				-0.5
1,689,655	-				+0.4
1,689,655	-				-0.2
1,689,768	-				+0.9
1,689,772	-				-1.3
1,689,773	+				-0.9
1,689,773	+				+0.1
1,689,774	-				-2.1
1,689,821	-				+0.3
1,689,832	-				-0.3
1,689,835	+				-0.5
1,689,876	+				-0.0
1,689,876	+				+0.2
1,689,877	-				+0.2
1,689,896	-				-0.4
1,689,953	+				+0.1
1,689,953	+				-0.1
1,690,014	-		CA265_RS06815	0.15	+0.1
1,690,032	+		CA265_RS06815	0.16	-0.4
1,690,033	-		CA265_RS06815	0.16	+0.6
1,690,046	+		CA265_RS06815	0.17	-0.1
1,690,047	-		CA265_RS06815	0.17	-0.9
1,690,047	-		CA265_RS06815	0.17	+0.6
1,690,047	-		CA265_RS06815	0.17	+0.1
1,690,047	-		CA265_RS06815	0.17	-0.2
1,690,101	+		CA265_RS06815	0.22	-0.5
1,690,122	-		CA265_RS06815	0.24	-0.0
1,690,134	+		CA265_RS06815	0.25	-0.9
1,690,141	-		CA265_RS06815	0.25	-0.5
1,690,158	-		CA265_RS06815	0.27	+0.5
1,690,203	+		CA265_RS06815	0.30	-0.3
1,690,283	-		CA265_RS06815	0.37	+1.1
1,690,446	-		CA265_RS06815	0.50	+2.1
1,690,478	+		CA265_RS06815	0.53	-0.0
1,690,508	+		CA265_RS06815	0.55	+1.0
1,690,547	-		CA265_RS06815	0.59	+0.6
1,690,620	+		CA265_RS06815	0.65	+0.6
1,690,642	-		CA265_RS06815	0.66	+0.3
1,690,690	-		CA265_RS06815	0.70	+2.7
1,690,737	-		CA265_RS06815	0.74	+0.6
1,690,777	-		CA265_RS06815	0.77	-0.1
1,690,811	+		CA265_RS06815	0.80	-2.0
1,690,811	+		CA265_RS06815	0.80	+1.8
1,690,842	-		CA265_RS06815	0.83	-1.3
1,690,875	-		CA265_RS06815	0.85	-0.5
1,690,901	+		CA265_RS06815	0.88	+1.8
1,691,004	+				+1.5
1,691,104	+				-0.4
1,691,254	-				-0.6
1,691,295	+				-0.1
1,691,329	-				-1.2
1,691,331	+				+1.1
1,691,332	-				+1.0
1,691,337	+				-0.4
1,691,337	+				+0.2
1,691,338	-				-0.4
1,691,338	-				+0.8
1,691,347	-				+0.6
1,691,392	+				+0.6
1,691,396	-				-1.3
1,691,417	-				+0.9
1,691,417	-				-0.2
1,691,745	-		CA265_RS06820	0.20	+0.1
1,691,772	+		CA265_RS06820	0.22	-2.0
1,691,773	-		CA265_RS06820	0.22	+0.0
1,691,783	+		CA265_RS06820	0.22	-0.3
1,691,784	-		CA265_RS06820	0.22	-1.0
1,691,788	-		CA265_RS06820	0.22	-0.0
1,691,832	-		CA265_RS06820	0.25	-0.7
1,691,845	-		CA265_RS06820	0.25	+0.7
1,691,851	+		CA265_RS06820	0.26	+0.5
1,691,851	+		CA265_RS06820	0.26	+0.1
1,691,851	+		CA265_RS06820	0.26	+1.2
1,691,873	+		CA265_RS06820	0.27	-1.2
1,691,893	+		CA265_RS06820	0.28	-0.3
1,691,894	-		CA265_RS06820	0.28	+1.2
1,691,898	-		CA265_RS06820	0.28	-0.1
1,691,915	+		CA265_RS06820	0.29	+1.1
1,691,915	+		CA265_RS06820	0.29	-0.5