Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03865

Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03860 and CA265_RS03865 are separated by 2 nucleotidesCA265_RS03865 and CA265_RS03870 overlap by 14 nucleotides CA265_RS03860: CA265_RS03860 - hypothetical protein, at 909,660 to 911,444 _RS03860 CA265_RS03865: CA265_RS03865 - hypothetical protein, at 911,447 to 913,579 _RS03865 CA265_RS03870: CA265_RS03870 - hypothetical protein, at 913,566 to 914,933 _RS03870 Position (kb) 911 912 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 910.449 kb on + strand, within CA265_RS03860at 910.613 kb on - strand, within CA265_RS03860at 910.717 kb on - strand, within CA265_RS03860at 910.784 kb on + strand, within CA265_RS03860at 910.789 kb on - strand, within CA265_RS03860at 910.794 kb on + strand, within CA265_RS03860at 910.794 kb on + strand, within CA265_RS03860at 910.795 kb on - strand, within CA265_RS03860at 910.796 kb on + strand, within CA265_RS03860at 910.797 kb on + strand, within CA265_RS03860at 910.798 kb on - strand, within CA265_RS03860at 910.838 kb on + strand, within CA265_RS03860at 910.872 kb on - strand, within CA265_RS03860at 910.872 kb on - strand, within CA265_RS03860at 910.942 kb on + strand, within CA265_RS03860at 910.962 kb on + strand, within CA265_RS03860at 911.090 kb on - strand, within CA265_RS03860at 911.152 kb on - strandat 911.331 kb on - strandat 911.352 kb on + strandat 911.377 kb on - strandat 911.431 kb on - strandat 911.448 kb on + strandat 911.448 kb on + strandat 911.449 kb on - strandat 911.449 kb on - strandat 911.449 kb on - strandat 911.474 kb on - strandat 911.596 kb on + strandat 911.606 kb on - strandat 911.623 kb on + strandat 911.640 kb on + strandat 911.757 kb on - strand, within CA265_RS03865at 911.882 kb on - strand, within CA265_RS03865at 911.895 kb on + strand, within CA265_RS03865at 911.895 kb on + strand, within CA265_RS03865at 911.895 kb on + strand, within CA265_RS03865at 911.895 kb on + strand, within CA265_RS03865at 911.895 kb on + strand, within CA265_RS03865at 911.896 kb on - strand, within CA265_RS03865at 911.896 kb on - strand, within CA265_RS03865at 911.896 kb on - strand, within CA265_RS03865at 911.941 kb on + strand, within CA265_RS03865at 911.942 kb on - strand, within CA265_RS03865at 911.944 kb on - strand, within CA265_RS03865at 911.974 kb on - strand, within CA265_RS03865at 911.974 kb on - strand, within CA265_RS03865at 911.974 kb on - strand, within CA265_RS03865at 912.011 kb on + strand, within CA265_RS03865at 912.024 kb on - strand, within CA265_RS03865at 912.392 kb on + strand, within CA265_RS03865at 912.631 kb on + strand, within CA265_RS03865at 912.631 kb on + strand, within CA265_RS03865at 912.631 kb on + strand, within CA265_RS03865at 912.632 kb on - strand, within CA265_RS03865at 912.643 kb on + strand, within CA265_RS03865at 912.644 kb on - strand, within CA265_RS03865at 912.674 kb on + strand, within CA265_RS03865at 912.675 kb on - strand, within CA265_RS03865at 912.675 kb on - strand, within CA265_RS03865at 912.675 kb on - strand, within CA265_RS03865at 912.713 kb on - strand, within CA265_RS03865at 912.713 kb on - strandat 912.775 kb on - strandat 912.854 kb on - strand, within CA265_RS03865at 912.854 kb on - strand, within CA265_RS03865at 912.854 kb on - strand, within CA265_RS03865at 912.875 kb on + strand, within CA265_RS03865at 912.929 kb on - strand, within CA265_RS03865at 912.980 kb on - strand, within CA265_RS03865at 913.192 kb on - strand, within CA265_RS03865at 913.193 kb on + strand, within CA265_RS03865at 913.250 kb on - strand, within CA265_RS03865at 913.269 kb on - strand, within CA265_RS03865at 913.269 kb on - strand, within CA265_RS03865at 913.336 kb on + strand, within CA265_RS03865at 913.337 kb on - strand, within CA265_RS03865at 913.455 kb on + strandat 913.455 kb on + strandat 913.475 kb on - strandat 913.519 kb on - strandat 913.580 kb on - strandat 913.603 kb on - strandat 913.785 kb on - strand, within CA265_RS03870at 913.806 kb on + strand, within CA265_RS03870at 913.821 kb on + strand, within CA265_RS03870at 913.821 kb on + strand, within CA265_RS03870at 914.025 kb on + strand, within CA265_RS03870at 914.025 kb on + strand, within CA265_RS03870at 914.079 kb on - strand, within CA265_RS03870at 914.125 kb on - strand, within CA265_RS03870at 914.125 kb on - strand, within CA265_RS03870at 914.145 kb on - strand, within CA265_RS03870at 914.145 kb on - strand, within CA265_RS03870at 914.166 kb on - strand, within CA265_RS03870at 914.204 kb on + strand, within CA265_RS03870at 914.232 kb on + strand, within CA265_RS03870at 914.232 kb on + strand, within CA265_RS03870at 914.233 kb on - strand, within CA265_RS03870at 914.233 kb on - strand, within CA265_RS03870at 914.278 kb on + strand, within CA265_RS03870at 914.311 kb on + strand, within CA265_RS03870at 914.375 kb on - strand, within CA265_RS03870at 914.390 kb on + strand, within CA265_RS03870at 914.391 kb on - strand, within CA265_RS03870at 914.421 kb on + strand, within CA265_RS03870at 914.422 kb on - strand, within CA265_RS03870at 914.488 kb on - strand, within CA265_RS03870at 914.503 kb on - strand, within CA265_RS03870at 914.532 kb on - strand, within CA265_RS03870at 914.534 kb on + strand, within CA265_RS03870

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml
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910,449 + CA265_RS03860 0.44 -1.1
910,613 - CA265_RS03860 0.53 -2.8
910,717 - CA265_RS03860 0.59 +0.3
910,784 + CA265_RS03860 0.63 -0.4
910,789 - CA265_RS03860 0.63 +0.1
910,794 + CA265_RS03860 0.64 +0.5
910,794 + CA265_RS03860 0.64 -1.2
910,795 - CA265_RS03860 0.64 -1.1
910,796 + CA265_RS03860 0.64 +0.4
910,797 + CA265_RS03860 0.64 -0.0
910,798 - CA265_RS03860 0.64 +0.4
910,838 + CA265_RS03860 0.66 -0.2
910,872 - CA265_RS03860 0.68 +2.0
910,872 - CA265_RS03860 0.68 -1.6
910,942 + CA265_RS03860 0.72 -0.9
910,962 + CA265_RS03860 0.73 -1.2
911,090 - CA265_RS03860 0.80 -0.9
911,152 - +1.4
911,331 - -0.6
911,352 + +0.6
911,377 - -1.6
911,431 - -1.3
911,448 + +0.7
911,448 + +2.4
911,449 - -0.7
911,449 - +0.3
911,449 - -0.1
911,474 - -2.5
911,596 + -0.0
911,606 - -0.5
911,623 + +0.9
911,640 + +0.2
911,757 - CA265_RS03865 0.15 -0.3
911,882 - CA265_RS03865 0.20 -1.2
911,895 + CA265_RS03865 0.21 -1.5
911,895 + CA265_RS03865 0.21 -2.3
911,895 + CA265_RS03865 0.21 +1.4
911,895 + CA265_RS03865 0.21 +0.6
911,895 + CA265_RS03865 0.21 -1.2
911,896 - CA265_RS03865 0.21 +0.8
911,896 - CA265_RS03865 0.21 -2.6
911,896 - CA265_RS03865 0.21 +0.0
911,941 + CA265_RS03865 0.23 -0.4
911,942 - CA265_RS03865 0.23 -0.4
911,944 - CA265_RS03865 0.23 -0.8
911,974 - CA265_RS03865 0.25 +0.4
911,974 - CA265_RS03865 0.25 -0.1
911,974 - CA265_RS03865 0.25 -1.6
912,011 + CA265_RS03865 0.26 -0.4
912,024 - CA265_RS03865 0.27 -2.5
912,392 + CA265_RS03865 0.44 +0.5
912,631 + CA265_RS03865 0.56 -0.8
912,631 + CA265_RS03865 0.56 -1.1
912,631 + CA265_RS03865 0.56 +2.4
912,632 - CA265_RS03865 0.56 -0.4
912,643 + CA265_RS03865 0.56 -0.2
912,644 - CA265_RS03865 0.56 -1.0
912,674 + CA265_RS03865 0.58 -0.9
912,675 - CA265_RS03865 0.58 -0.4
912,675 - CA265_RS03865 0.58 +2.4
912,675 - CA265_RS03865 0.58 +0.5
912,713 - CA265_RS03865 0.59 +0.1
912,713 - +3.0
912,775 - +3.0
912,854 - CA265_RS03865 0.66 -0.9
912,854 - CA265_RS03865 0.66 +0.1
912,854 - CA265_RS03865 0.66 -1.2
912,875 + CA265_RS03865 0.67 +1.4
912,929 - CA265_RS03865 0.69 -1.0
912,980 - CA265_RS03865 0.72 +1.4
913,192 - CA265_RS03865 0.82 -0.6
913,193 + CA265_RS03865 0.82 -0.8
913,250 - CA265_RS03865 0.85 -1.6
913,269 - CA265_RS03865 0.85 -0.4
913,269 - CA265_RS03865 0.85 +0.3
913,336 + CA265_RS03865 0.89 +0.3
913,337 - CA265_RS03865 0.89 -0.7
913,455 + -0.8
913,455 + +1.2
913,475 - -0.1
913,519 - +0.2
913,580 - +0.9
913,603 - -0.3
913,785 - CA265_RS03870 0.16 -1.7
913,806 + CA265_RS03870 0.18 -0.9
913,821 + CA265_RS03870 0.19 -0.5
913,821 + CA265_RS03870 0.19 -0.2
914,025 + CA265_RS03870 0.34 +0.4
914,025 + CA265_RS03870 0.34 -1.6
914,079 - CA265_RS03870 0.38 -1.3
914,125 - CA265_RS03870 0.41 -0.5
914,125 - CA265_RS03870 0.41 +0.1
914,145 - CA265_RS03870 0.42 -0.6
914,145 - CA265_RS03870 0.42 -0.9
914,166 - CA265_RS03870 0.44 -0.3
914,204 + CA265_RS03870 0.47 -0.3
914,232 + CA265_RS03870 0.49 +0.7
914,232 + CA265_RS03870 0.49 +2.3
914,233 - CA265_RS03870 0.49 -1.4
914,233 - CA265_RS03870 0.49 +0.2
914,278 + CA265_RS03870 0.52 +1.4
914,311 + CA265_RS03870 0.54 +0.2
914,375 - CA265_RS03870 0.59 -0.2
914,390 + CA265_RS03870 0.60 +1.3
914,391 - CA265_RS03870 0.60 -0.1
914,421 + CA265_RS03870 0.62 +0.7
914,422 - CA265_RS03870 0.63 +0.9
914,488 - CA265_RS03870 0.67 -1.3
914,503 - CA265_RS03870 0.68 +0.2
914,532 - CA265_RS03870 0.71 -0.9
914,534 + CA265_RS03870 0.71 +0.1

Or see this region's nucleotide sequence