Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02530

Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS02525 and CA265_RS02530 are separated by 2 nucleotidesCA265_RS02530 and CA265_RS02535 are separated by 2 nucleotides CA265_RS02525: CA265_RS02525 - hypothetical protein, at 631,481 to 633,082 _RS02525 CA265_RS02530: CA265_RS02530 - hypothetical protein, at 633,085 to 634,845 _RS02530 CA265_RS02535: CA265_RS02535 - hypothetical protein, at 634,848 to 636,905 _RS02535 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 632.133 kb on - strand, within CA265_RS02525at 632.229 kb on + strand, within CA265_RS02525at 632.326 kb on - strand, within CA265_RS02525at 632.342 kb on - strand, within CA265_RS02525at 632.342 kb on - strand, within CA265_RS02525at 632.366 kb on + strand, within CA265_RS02525at 632.366 kb on + strand, within CA265_RS02525at 632.367 kb on - strand, within CA265_RS02525at 632.399 kb on - strand, within CA265_RS02525at 632.446 kb on - strand, within CA265_RS02525at 632.462 kb on - strand, within CA265_RS02525at 632.466 kb on - strand, within CA265_RS02525at 632.579 kb on + strand, within CA265_RS02525at 632.579 kb on + strand, within CA265_RS02525at 632.580 kb on - strand, within CA265_RS02525at 632.621 kb on + strand, within CA265_RS02525at 632.656 kb on + strand, within CA265_RS02525at 632.657 kb on - strand, within CA265_RS02525at 632.657 kb on - strand, within CA265_RS02525at 632.675 kb on - strand, within CA265_RS02525at 632.867 kb on + strand, within CA265_RS02525at 632.868 kb on - strand, within CA265_RS02525at 632.870 kb on - strand, within CA265_RS02525at 632.970 kb on + strandat 632.974 kb on - strandat 632.987 kb on - strandat 632.987 kb on - strandat 633.021 kb on - strandat 633.052 kb on + strandat 633.053 kb on - strandat 633.100 kb on + strandat 633.127 kb on - strandat 633.130 kb on + strandat 633.130 kb on + strandat 633.130 kb on + strandat 633.224 kb on - strandat 633.244 kb on + strandat 633.245 kb on - strandat 633.266 kb on - strand, within CA265_RS02530at 633.323 kb on + strand, within CA265_RS02530at 633.325 kb on + strand, within CA265_RS02530at 633.327 kb on + strand, within CA265_RS02530at 633.327 kb on + strand, within CA265_RS02530at 633.349 kb on + strand, within CA265_RS02530at 633.350 kb on - strand, within CA265_RS02530at 633.351 kb on + strand, within CA265_RS02530at 633.355 kb on + strand, within CA265_RS02530at 633.479 kb on + strand, within CA265_RS02530at 633.479 kb on + strand, within CA265_RS02530at 633.480 kb on - strand, within CA265_RS02530at 633.493 kb on - strand, within CA265_RS02530at 633.498 kb on + strand, within CA265_RS02530at 633.499 kb on - strand, within CA265_RS02530at 633.547 kb on - strand, within CA265_RS02530at 633.621 kb on + strand, within CA265_RS02530at 633.621 kb on + strand, within CA265_RS02530at 633.650 kb on + strand, within CA265_RS02530at 633.711 kb on + strand, within CA265_RS02530at 633.743 kb on - strand, within CA265_RS02530at 633.771 kb on + strand, within CA265_RS02530at 633.772 kb on + strand, within CA265_RS02530at 633.772 kb on + strand, within CA265_RS02530at 633.786 kb on + strand, within CA265_RS02530at 633.787 kb on - strand, within CA265_RS02530at 633.816 kb on + strand, within CA265_RS02530at 633.816 kb on + strand, within CA265_RS02530at 633.919 kb on - strand, within CA265_RS02530at 633.920 kb on + strand, within CA265_RS02530at 633.921 kb on - strand, within CA265_RS02530at 633.996 kb on + strand, within CA265_RS02530at 633.997 kb on - strand, within CA265_RS02530at 634.008 kb on - strand, within CA265_RS02530at 634.019 kb on - strand, within CA265_RS02530at 634.019 kb on - strand, within CA265_RS02530at 634.019 kb on - strand, within CA265_RS02530at 634.026 kb on + strand, within CA265_RS02530at 634.030 kb on - strand, within CA265_RS02530at 634.074 kb on - strand, within CA265_RS02530at 634.074 kb on - strand, within CA265_RS02530at 634.217 kb on - strand, within CA265_RS02530at 634.228 kb on - strand, within CA265_RS02530at 634.228 kb on - strand, within CA265_RS02530at 634.228 kb on - strand, within CA265_RS02530at 634.234 kb on - strand, within CA265_RS02530at 634.287 kb on + strand, within CA265_RS02530at 634.287 kb on + strand, within CA265_RS02530at 634.317 kb on - strand, within CA265_RS02530at 634.325 kb on + strand, within CA265_RS02530at 634.354 kb on - strand, within CA265_RS02530at 634.498 kb on - strand, within CA265_RS02530at 634.543 kb on + strand, within CA265_RS02530at 634.544 kb on - strand, within CA265_RS02530at 634.546 kb on + strand, within CA265_RS02530at 634.547 kb on - strand, within CA265_RS02530at 634.603 kb on + strand, within CA265_RS02530at 634.644 kb on + strandat 634.655 kb on - strand, within CA265_RS02530at 634.678 kb on + strandat 634.703 kb on + strandat 634.836 kb on + strandat 634.844 kb on - strandat 634.857 kb on - strandat 634.936 kb on + strandat 634.940 kb on + strandat 634.981 kb on - strandat 634.989 kb on + strandat 635.053 kb on - strandat 635.053 kb on - strandat 635.111 kb on + strand, within CA265_RS02535at 635.117 kb on + strand, within CA265_RS02535at 635.118 kb on - strand, within CA265_RS02535at 635.125 kb on + strand, within CA265_RS02535at 635.136 kb on + strand, within CA265_RS02535at 635.138 kb on + strand, within CA265_RS02535at 635.206 kb on - strand, within CA265_RS02535at 635.249 kb on + strand, within CA265_RS02535at 635.266 kb on + strand, within CA265_RS02535at 635.267 kb on - strand, within CA265_RS02535at 635.267 kb on - strand, within CA265_RS02535at 635.267 kb on - strand, within CA265_RS02535at 635.267 kb on - strand, within CA265_RS02535at 635.268 kb on + strand, within CA265_RS02535at 635.269 kb on - strand, within CA265_RS02535at 635.272 kb on + strand, within CA265_RS02535at 635.272 kb on + strand, within CA265_RS02535at 635.272 kb on + strand, within CA265_RS02535at 635.273 kb on - strand, within CA265_RS02535at 635.389 kb on - strand, within CA265_RS02535at 635.474 kb on - strand, within CA265_RS02535at 635.651 kb on + strand, within CA265_RS02535at 635.656 kb on + strand, within CA265_RS02535at 635.664 kb on + strand, within CA265_RS02535at 635.669 kb on + strand, within CA265_RS02535at 635.670 kb on - strand, within CA265_RS02535at 635.749 kb on + strand, within CA265_RS02535at 635.750 kb on - strand, within CA265_RS02535at 635.801 kb on - strand, within CA265_RS02535at 635.835 kb on + strand, within CA265_RS02535at 635.836 kb on - strand, within CA265_RS02535at 635.836 kb on - strand, within CA265_RS02535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml
remove
632,133 - CA265_RS02525 0.41 +1.3
632,229 + CA265_RS02525 0.47 -0.9
632,326 - CA265_RS02525 0.53 -1.6
632,342 - CA265_RS02525 0.54 +0.7
632,342 - CA265_RS02525 0.54 +2.7
632,366 + CA265_RS02525 0.55 -0.0
632,366 + CA265_RS02525 0.55 +0.0
632,367 - CA265_RS02525 0.55 -0.1
632,399 - CA265_RS02525 0.57 -0.9
632,446 - CA265_RS02525 0.60 +1.1
632,462 - CA265_RS02525 0.61 -0.4
632,466 - CA265_RS02525 0.61 +0.3
632,579 + CA265_RS02525 0.69 -0.4
632,579 + CA265_RS02525 0.69 +0.2
632,580 - CA265_RS02525 0.69 -0.4
632,621 + CA265_RS02525 0.71 +0.5
632,656 + CA265_RS02525 0.73 +0.4
632,657 - CA265_RS02525 0.73 +4.5
632,657 - CA265_RS02525 0.73 -1.6
632,675 - CA265_RS02525 0.75 -0.0
632,867 + CA265_RS02525 0.87 +0.4
632,868 - CA265_RS02525 0.87 +0.3
632,870 - CA265_RS02525 0.87 +0.0
632,970 + -0.2
632,974 - -0.0
632,987 - -0.5
632,987 - +0.9
633,021 - -1.9
633,052 + +2.6
633,053 - -1.1
633,100 + -0.1
633,127 - +0.2
633,130 + -0.2
633,130 + -1.6
633,130 + -0.7
633,224 - -0.4
633,244 + +0.1
633,245 - +0.6
633,266 - CA265_RS02530 0.10 -1.8
633,323 + CA265_RS02530 0.14 +0.1
633,325 + CA265_RS02530 0.14 +0.7
633,327 + CA265_RS02530 0.14 -0.8
633,327 + CA265_RS02530 0.14 +0.0
633,349 + CA265_RS02530 0.15 -0.3
633,350 - CA265_RS02530 0.15 -0.0
633,351 + CA265_RS02530 0.15 -1.0
633,355 + CA265_RS02530 0.15 -0.5
633,479 + CA265_RS02530 0.22 +0.1
633,479 + CA265_RS02530 0.22 +1.5
633,480 - CA265_RS02530 0.22 -0.4
633,493 - CA265_RS02530 0.23 -0.0
633,498 + CA265_RS02530 0.23 -1.7
633,499 - CA265_RS02530 0.24 -1.6
633,547 - CA265_RS02530 0.26 -0.7
633,621 + CA265_RS02530 0.30 -0.8
633,621 + CA265_RS02530 0.30 -0.7
633,650 + CA265_RS02530 0.32 +1.4
633,711 + CA265_RS02530 0.36 -1.5
633,743 - CA265_RS02530 0.37 -0.5
633,771 + CA265_RS02530 0.39 -0.3
633,772 + CA265_RS02530 0.39 -0.1
633,772 + CA265_RS02530 0.39 -0.3
633,786 + CA265_RS02530 0.40 -0.3
633,787 - CA265_RS02530 0.40 -1.8
633,816 + CA265_RS02530 0.42 +0.3
633,816 + CA265_RS02530 0.42 -1.2
633,919 - CA265_RS02530 0.47 +0.7
633,920 + CA265_RS02530 0.47 +0.8
633,921 - CA265_RS02530 0.47 +0.3
633,996 + CA265_RS02530 0.52 -0.2
633,997 - CA265_RS02530 0.52 -0.3
634,008 - CA265_RS02530 0.52 +1.3
634,019 - CA265_RS02530 0.53 -2.5
634,019 - CA265_RS02530 0.53 -1.0
634,019 - CA265_RS02530 0.53 +0.2
634,026 + CA265_RS02530 0.53 -0.6
634,030 - CA265_RS02530 0.54 -0.6
634,074 - CA265_RS02530 0.56 +1.5
634,074 - CA265_RS02530 0.56 +1.5
634,217 - CA265_RS02530 0.64 -0.0
634,228 - CA265_RS02530 0.65 +1.5
634,228 - CA265_RS02530 0.65 -1.2
634,228 - CA265_RS02530 0.65 -0.2
634,234 - CA265_RS02530 0.65 -0.7
634,287 + CA265_RS02530 0.68 -0.4
634,287 + CA265_RS02530 0.68 +0.6
634,317 - CA265_RS02530 0.70 +0.6
634,325 + CA265_RS02530 0.70 -1.1
634,354 - CA265_RS02530 0.72 -0.9
634,498 - CA265_RS02530 0.80 +0.4
634,543 + CA265_RS02530 0.83 +0.9
634,544 - CA265_RS02530 0.83 +0.1
634,546 + CA265_RS02530 0.83 -0.2
634,547 - CA265_RS02530 0.83 -0.4
634,603 + CA265_RS02530 0.86 -0.8
634,644 + +1.5
634,655 - CA265_RS02530 0.89 -0.3
634,678 + +2.1
634,703 + +2.1
634,836 + -0.6
634,844 - -1.1
634,857 - -0.6
634,936 + -0.7
634,940 + -0.2
634,981 - -0.8
634,989 + +1.1
635,053 - -0.3
635,053 - -1.4
635,111 + CA265_RS02535 0.13 -1.3
635,117 + CA265_RS02535 0.13 +0.0
635,118 - CA265_RS02535 0.13 -1.5
635,125 + CA265_RS02535 0.13 +2.3
635,136 + CA265_RS02535 0.14 -0.3
635,138 + CA265_RS02535 0.14 +0.1
635,206 - CA265_RS02535 0.17 -0.1
635,249 + CA265_RS02535 0.19 -0.5
635,266 + CA265_RS02535 0.20 +1.1
635,267 - CA265_RS02535 0.20 -0.3
635,267 - CA265_RS02535 0.20 -0.8
635,267 - CA265_RS02535 0.20 +0.7
635,267 - CA265_RS02535 0.20 -1.7
635,268 + CA265_RS02535 0.20 -0.8
635,269 - CA265_RS02535 0.20 +0.8
635,272 + CA265_RS02535 0.21 -0.1
635,272 + CA265_RS02535 0.21 +0.0
635,272 + CA265_RS02535 0.21 +0.2
635,273 - CA265_RS02535 0.21 -1.6
635,389 - CA265_RS02535 0.26 -1.2
635,474 - CA265_RS02535 0.30 -0.8
635,651 + CA265_RS02535 0.39 +0.4
635,656 + CA265_RS02535 0.39 +1.1
635,664 + CA265_RS02535 0.40 -0.5
635,669 + CA265_RS02535 0.40 +0.8
635,670 - CA265_RS02535 0.40 +0.6
635,749 + CA265_RS02535 0.44 +0.1
635,750 - CA265_RS02535 0.44 -0.2
635,801 - CA265_RS02535 0.46 +0.3
635,835 + CA265_RS02535 0.48 +1.0
635,836 - CA265_RS02535 0.48 -0.2
635,836 - CA265_RS02535 0.48 +1.0

Or see this region's nucleotide sequence