Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02285 and CA265_RS02290 are separated by 84 nucleotides CA265_RS02290 and CA265_RS02295 overlap by 25 nucleotides CA265_RS02295 and CA265_RS02300 are separated by 6 nucleotides CA265_RS02300 and CA265_RS02305 are separated by 92 nucleotides
CA265_RS02285: CA265_RS02285 - hypothetical protein, at 572,294 to 573,037
_RS02285
CA265_RS02290: CA265_RS02290 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 573,122 to 573,730
_RS02290
CA265_RS02295: CA265_RS02295 - metal-binding protein, at 573,706 to 573,954
_RS02295
CA265_RS02300: CA265_RS02300 - cysteine methyltransferase, at 573,961 to 574,800
_RS02300
CA265_RS02305: CA265_RS02305 - hypothetical protein, at 574,893 to 575,429
_RS02305
Position (kb) 573
574 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 572.727 kb on + strand, within CA265_RS02285 at 572.739 kb on - strand, within CA265_RS02285 at 572.739 kb on - strand, within CA265_RS02285 at 572.849 kb on + strand, within CA265_RS02285 at 572.866 kb on + strand, within CA265_RS02285 at 572.879 kb on - strand, within CA265_RS02285 at 572.906 kb on - strand, within CA265_RS02285 at 572.973 kb on - strand at 572.973 kb on - strand at 573.058 kb on - strand at 573.063 kb on + strand at 573.063 kb on + strand at 573.084 kb on - strand at 573.128 kb on + strand at 573.128 kb on + strand at 573.139 kb on + strand at 573.164 kb on - strand at 573.251 kb on + strand, within CA265_RS02290 at 573.394 kb on - strand, within CA265_RS02290 at 573.400 kb on + strand, within CA265_RS02290 at 573.425 kb on - strand, within CA265_RS02290 at 573.496 kb on + strand, within CA265_RS02290 at 573.504 kb on + strand, within CA265_RS02290 at 573.510 kb on + strand, within CA265_RS02290 at 573.511 kb on - strand, within CA265_RS02290 at 573.539 kb on + strand, within CA265_RS02290 at 573.540 kb on - strand, within CA265_RS02290 at 573.556 kb on + strand, within CA265_RS02290 at 573.571 kb on + strand, within CA265_RS02290 at 573.605 kb on - strand, within CA265_RS02290 at 573.708 kb on - strand at 573.737 kb on + strand, within CA265_RS02295 at 573.738 kb on - strand, within CA265_RS02295 at 573.738 kb on - strand, within CA265_RS02295 at 573.738 kb on - strand, within CA265_RS02295 at 573.784 kb on + strand, within CA265_RS02295 at 573.850 kb on - strand, within CA265_RS02295 at 573.850 kb on - strand, within CA265_RS02295 at 574.051 kb on + strand, within CA265_RS02300 at 574.052 kb on - strand, within CA265_RS02300 at 574.052 kb on - strand, within CA265_RS02300 at 574.108 kb on + strand, within CA265_RS02300 at 574.126 kb on - strand, within CA265_RS02300 at 574.131 kb on + strand, within CA265_RS02300 at 574.157 kb on + strand, within CA265_RS02300 at 574.181 kb on - strand, within CA265_RS02300 at 574.181 kb on - strand, within CA265_RS02300 at 574.228 kb on + strand, within CA265_RS02300 at 574.240 kb on - strand, within CA265_RS02300 at 574.277 kb on + strand, within CA265_RS02300 at 574.278 kb on - strand, within CA265_RS02300 at 574.299 kb on + strand, within CA265_RS02300 at 574.306 kb on + strand, within CA265_RS02300 at 574.307 kb on - strand, within CA265_RS02300 at 574.605 kb on - strand, within CA265_RS02300 at 574.614 kb on + strand, within CA265_RS02300 at 574.619 kb on + strand, within CA265_RS02300 at 574.619 kb on + strand, within CA265_RS02300 at 574.641 kb on + strand, within CA265_RS02300 at 574.687 kb on + strand, within CA265_RS02300 at 574.714 kb on + strand, within CA265_RS02300 at 574.811 kb on - strand at 574.816 kb on - strand at 574.898 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml remove 572,727 + CA265_RS02285 0.58 -0.0 572,739 - CA265_RS02285 0.60 -0.6 572,739 - CA265_RS02285 0.60 -1.1 572,849 + CA265_RS02285 0.75 +0.6 572,866 + CA265_RS02285 0.77 +1.2 572,879 - CA265_RS02285 0.79 +1.4 572,906 - CA265_RS02285 0.82 -0.2 572,973 - +0.8 572,973 - -0.8 573,058 - +0.1 573,063 + +0.9 573,063 + -0.2 573,084 - +0.7 573,128 + +0.9 573,128 + +0.4 573,139 + -0.7 573,164 - +0.9 573,251 + CA265_RS02290 0.21 +0.0 573,394 - CA265_RS02290 0.45 -0.7 573,400 + CA265_RS02290 0.46 -1.8 573,425 - CA265_RS02290 0.50 -2.3 573,496 + CA265_RS02290 0.61 +1.8 573,504 + CA265_RS02290 0.63 +0.2 573,510 + CA265_RS02290 0.64 +0.0 573,511 - CA265_RS02290 0.64 +0.8 573,539 + CA265_RS02290 0.68 -0.7 573,540 - CA265_RS02290 0.69 -0.5 573,556 + CA265_RS02290 0.71 -0.3 573,571 + CA265_RS02290 0.74 -0.7 573,605 - CA265_RS02290 0.79 +0.4 573,708 - -0.2 573,737 + CA265_RS02295 0.12 -0.3 573,738 - CA265_RS02295 0.13 -1.3 573,738 - CA265_RS02295 0.13 -0.2 573,738 - CA265_RS02295 0.13 -0.6 573,784 + CA265_RS02295 0.31 -0.4 573,850 - CA265_RS02295 0.58 +0.8 573,850 - CA265_RS02295 0.58 +0.3 574,051 + CA265_RS02300 0.11 -0.2 574,052 - CA265_RS02300 0.11 -2.0 574,052 - CA265_RS02300 0.11 -0.7 574,108 + CA265_RS02300 0.17 -2.4 574,126 - CA265_RS02300 0.20 +0.3 574,131 + CA265_RS02300 0.20 +2.2 574,157 + CA265_RS02300 0.23 -2.0 574,181 - CA265_RS02300 0.26 -0.9 574,181 - CA265_RS02300 0.26 -1.6 574,228 + CA265_RS02300 0.32 -0.5 574,240 - CA265_RS02300 0.33 +0.4 574,277 + CA265_RS02300 0.38 -1.3 574,278 - CA265_RS02300 0.38 +0.5 574,299 + CA265_RS02300 0.40 -0.7 574,306 + CA265_RS02300 0.41 +1.8 574,307 - CA265_RS02300 0.41 -1.8 574,605 - CA265_RS02300 0.77 -0.8 574,614 + CA265_RS02300 0.78 +1.0 574,619 + CA265_RS02300 0.78 +3.2 574,619 + CA265_RS02300 0.78 +0.3 574,641 + CA265_RS02300 0.81 +0.2 574,687 + CA265_RS02300 0.86 +0.4 574,714 + CA265_RS02300 0.90 +1.2 574,811 - +1.6 574,816 - -0.3 574,898 + +0.0
Or see this region's nucleotide sequence