Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00720

Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00715 and CA265_RS00720 are separated by 86 nucleotidesCA265_RS00720 and CA265_RS00725 are separated by 41 nucleotides CA265_RS00715: CA265_RS00715 - hypothetical protein, at 165,640 to 168,699 _RS00715 CA265_RS00720: CA265_RS00720 - hypothetical protein, at 168,786 to 170,468 _RS00720 CA265_RS00725: CA265_RS00725 - hypothetical protein, at 170,510 to 173,620 _RS00725 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2at 167.889 kb on - strand, within CA265_RS00715at 167.889 kb on - strand, within CA265_RS00715at 167.938 kb on - strand, within CA265_RS00715at 167.938 kb on - strand, within CA265_RS00715at 167.941 kb on - strand, within CA265_RS00715at 167.957 kb on - strand, within CA265_RS00715at 167.960 kb on - strand, within CA265_RS00715at 167.960 kb on - strand, within CA265_RS00715at 168.163 kb on + strand, within CA265_RS00715at 168.164 kb on - strand, within CA265_RS00715at 168.241 kb on + strand, within CA265_RS00715at 168.248 kb on + strand, within CA265_RS00715at 168.261 kb on + strand, within CA265_RS00715at 168.261 kb on + strand, within CA265_RS00715at 168.265 kb on + strand, within CA265_RS00715at 168.294 kb on - strand, within CA265_RS00715at 168.313 kb on + strand, within CA265_RS00715at 168.319 kb on + strand, within CA265_RS00715at 168.320 kb on - strand, within CA265_RS00715at 168.438 kb on + strandat 168.500 kb on + strandat 168.521 kb on + strandat 168.522 kb on - strandat 168.528 kb on + strandat 168.528 kb on + strandat 168.529 kb on - strandat 168.552 kb on + strandat 168.617 kb on - strandat 168.618 kb on + strandat 168.627 kb on - strandat 168.712 kb on - strandat 168.778 kb on - strandat 168.827 kb on + strandat 168.851 kb on + strandat 168.862 kb on + strandat 168.894 kb on - strandat 168.897 kb on + strandat 168.897 kb on + strandat 168.897 kb on + strandat 168.898 kb on - strandat 168.898 kb on - strandat 168.929 kb on - strandat 168.958 kb on - strand, within CA265_RS00720at 168.983 kb on + strand, within CA265_RS00720at 168.983 kb on + strand, within CA265_RS00720at 168.983 kb on + strand, within CA265_RS00720at 168.983 kb on + strand, within CA265_RS00720at 168.988 kb on - strand, within CA265_RS00720at 169.004 kb on - strand, within CA265_RS00720at 169.029 kb on - strand, within CA265_RS00720at 169.029 kb on - strand, within CA265_RS00720at 169.029 kb on - strand, within CA265_RS00720at 169.094 kb on - strand, within CA265_RS00720at 169.113 kb on - strand, within CA265_RS00720at 169.142 kb on - strand, within CA265_RS00720at 169.154 kb on + strand, within CA265_RS00720at 169.220 kb on + strand, within CA265_RS00720at 169.221 kb on - strand, within CA265_RS00720at 169.302 kb on - strand, within CA265_RS00720at 169.470 kb on + strand, within CA265_RS00720at 169.471 kb on - strand, within CA265_RS00720at 169.547 kb on - strand, within CA265_RS00720at 169.583 kb on + strand, within CA265_RS00720at 169.682 kb on + strand, within CA265_RS00720at 169.682 kb on + strand, within CA265_RS00720at 169.683 kb on - strand, within CA265_RS00720at 169.689 kb on - strand, within CA265_RS00720at 169.789 kb on - strand, within CA265_RS00720at 169.789 kb on - strand, within CA265_RS00720at 169.790 kb on + strand, within CA265_RS00720at 169.790 kb on + strand, within CA265_RS00720at 169.806 kb on + strand, within CA265_RS00720at 169.873 kb on + strand, within CA265_RS00720at 169.885 kb on - strand, within CA265_RS00720at 169.918 kb on + strand, within CA265_RS00720at 169.944 kb on + strand, within CA265_RS00720at 169.944 kb on + strand, within CA265_RS00720at 170.025 kb on + strand, within CA265_RS00720at 170.265 kb on - strand, within CA265_RS00720at 170.266 kb on + strand, within CA265_RS00720at 170.266 kb on + strand, within CA265_RS00720at 170.267 kb on - strand, within CA265_RS00720at 170.267 kb on - strand, within CA265_RS00720at 170.267 kb on - strand, within CA265_RS00720at 170.267 kb on - strand, within CA265_RS00720at 170.276 kb on + strand, within CA265_RS00720at 170.352 kb on + strandat 170.353 kb on - strandat 170.401 kb on - strandat 170.401 kb on - strandat 170.503 kb on - strandat 170.503 kb on - strandat 170.510 kb on - strandat 170.523 kb on + strandat 170.532 kb on + strandat 170.532 kb on + strandat 170.584 kb on + strandat 170.585 kb on - strandat 170.596 kb on - strandat 170.626 kb on + strandat 170.646 kb on + strandat 170.719 kb on + strandat 170.725 kb on + strandat 170.726 kb on - strandat 170.778 kb on + strandat 170.778 kb on + strandat 170.790 kb on + strandat 170.800 kb on + strandat 170.927 kb on - strand, within CA265_RS00725at 171.019 kb on + strand, within CA265_RS00725at 171.023 kb on + strand, within CA265_RS00725at 171.024 kb on - strand, within CA265_RS00725at 171.024 kb on - strand, within CA265_RS00725at 171.034 kb on + strand, within CA265_RS00725at 171.046 kb on - strand, within CA265_RS00725at 171.075 kb on - strand, within CA265_RS00725at 171.075 kb on - strand, within CA265_RS00725at 171.075 kb on - strand, within CA265_RS00725at 171.160 kb on + strand, within CA265_RS00725at 171.193 kb on + strand, within CA265_RS00725at 171.340 kb on + strand, within CA265_RS00725at 171.341 kb on - strand, within CA265_RS00725at 171.445 kb on + strand, within CA265_RS00725at 171.452 kb on - strand, within CA265_RS00725at 171.452 kb on - strand, within CA265_RS00725at 171.452 kb on - strand, within CA265_RS00725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml
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167,889 - CA265_RS00715 0.73 -2.0
167,889 - CA265_RS00715 0.73 -0.1
167,938 - CA265_RS00715 0.75 +1.7
167,938 - CA265_RS00715 0.75 -0.3
167,941 - CA265_RS00715 0.75 +0.4
167,957 - CA265_RS00715 0.76 +0.4
167,960 - CA265_RS00715 0.76 +0.2
167,960 - CA265_RS00715 0.76 +1.4
168,163 + CA265_RS00715 0.82 -0.5
168,164 - CA265_RS00715 0.82 -0.5
168,241 + CA265_RS00715 0.85 -0.4
168,248 + CA265_RS00715 0.85 +0.7
168,261 + CA265_RS00715 0.86 -2.0
168,261 + CA265_RS00715 0.86 +0.2
168,265 + CA265_RS00715 0.86 +1.1
168,294 - CA265_RS00715 0.87 +0.2
168,313 + CA265_RS00715 0.87 -0.8
168,319 + CA265_RS00715 0.88 -0.3
168,320 - CA265_RS00715 0.88 +1.9
168,438 + -1.1
168,500 + +0.6
168,521 + +0.1
168,522 - +1.2
168,528 + +0.7
168,528 + -0.4
168,529 - +0.1
168,552 + -0.3
168,617 - +1.0
168,618 + -0.5
168,627 - +0.4
168,712 - -1.0
168,778 - +0.9
168,827 + -1.8
168,851 + -0.8
168,862 + +0.5
168,894 - +0.1
168,897 + -0.5
168,897 + +0.8
168,897 + +2.0
168,898 - -0.0
168,898 - -1.0
168,929 - +1.2
168,958 - CA265_RS00720 0.10 +0.9
168,983 + CA265_RS00720 0.12 +1.2
168,983 + CA265_RS00720 0.12 +1.9
168,983 + CA265_RS00720 0.12 -0.3
168,983 + CA265_RS00720 0.12 -1.8
168,988 - CA265_RS00720 0.12 +0.1
169,004 - CA265_RS00720 0.13 -0.8
169,029 - CA265_RS00720 0.14 -0.3
169,029 - CA265_RS00720 0.14 +0.2
169,029 - CA265_RS00720 0.14 -0.5
169,094 - CA265_RS00720 0.18 +0.7
169,113 - CA265_RS00720 0.19 +0.1
169,142 - CA265_RS00720 0.21 +0.3
169,154 + CA265_RS00720 0.22 +1.0
169,220 + CA265_RS00720 0.26 +1.2
169,221 - CA265_RS00720 0.26 +1.2
169,302 - CA265_RS00720 0.31 -0.2
169,470 + CA265_RS00720 0.41 -1.2
169,471 - CA265_RS00720 0.41 +0.2
169,547 - CA265_RS00720 0.45 +0.1
169,583 + CA265_RS00720 0.47 -0.1
169,682 + CA265_RS00720 0.53 -0.4
169,682 + CA265_RS00720 0.53 +1.2
169,683 - CA265_RS00720 0.53 -0.8
169,689 - CA265_RS00720 0.54 -1.7
169,789 - CA265_RS00720 0.60 +1.8
169,789 - CA265_RS00720 0.60 -0.0
169,790 + CA265_RS00720 0.60 +0.6
169,790 + CA265_RS00720 0.60 +1.2
169,806 + CA265_RS00720 0.61 +1.7
169,873 + CA265_RS00720 0.65 -1.0
169,885 - CA265_RS00720 0.65 -0.1
169,918 + CA265_RS00720 0.67 -0.1
169,944 + CA265_RS00720 0.69 -0.1
169,944 + CA265_RS00720 0.69 -0.5
170,025 + CA265_RS00720 0.74 +1.8
170,265 - CA265_RS00720 0.88 +0.1
170,266 + CA265_RS00720 0.88 +1.1
170,266 + CA265_RS00720 0.88 +1.7
170,267 - CA265_RS00720 0.88 +0.3
170,267 - CA265_RS00720 0.88 -0.3
170,267 - CA265_RS00720 0.88 -0.0
170,267 - CA265_RS00720 0.88 +0.2
170,276 + CA265_RS00720 0.89 -0.3
170,352 + +1.2
170,353 - +1.7
170,401 - -1.6
170,401 - +0.3
170,503 - +2.0
170,503 - -0.6
170,510 - -1.7
170,523 + -1.3
170,532 + +0.3
170,532 + +0.2
170,584 + -1.5
170,585 - -0.4
170,596 - +0.8
170,626 + +2.5
170,646 + -1.0
170,719 + -0.6
170,725 + -0.8
170,726 - +0.2
170,778 + -1.0
170,778 + -2.5
170,790 + +0.2
170,800 + +0.1
170,927 - CA265_RS00725 0.13 -0.2
171,019 + CA265_RS00725 0.16 +0.3
171,023 + CA265_RS00725 0.16 +1.1
171,024 - CA265_RS00725 0.17 -1.3
171,024 - CA265_RS00725 0.17 -0.1
171,034 + CA265_RS00725 0.17 +0.5
171,046 - CA265_RS00725 0.17 -1.4
171,075 - CA265_RS00725 0.18 +0.0
171,075 - CA265_RS00725 0.18 +0.7
171,075 - CA265_RS00725 0.18 -0.2
171,160 + CA265_RS00725 0.21 -0.5
171,193 + CA265_RS00725 0.22 -0.9
171,340 + CA265_RS00725 0.27 +0.2
171,341 - CA265_RS00725 0.27 -0.5
171,445 + CA265_RS00725 0.30 +0.2
171,452 - CA265_RS00725 0.30 -0.1
171,452 - CA265_RS00725 0.30 -0.2
171,452 - CA265_RS00725 0.30 -0.1

Or see this region's nucleotide sequence