Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00705

Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00700 and CA265_RS00705 overlap by 19 nucleotidesCA265_RS00705 and CA265_RS00710 overlap by 4 nucleotides CA265_RS00700: CA265_RS00700 - hypothetical protein, at 159,255 to 160,442 _RS00700 CA265_RS00705: CA265_RS00705 - hypothetical protein, at 160,424 to 161,251 _RS00705 CA265_RS00710: CA265_RS00710 - hypothetical protein, at 161,248 to 165,369 _RS00710 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1 2at 159.608 kb on + strand, within CA265_RS00700at 159.655 kb on + strand, within CA265_RS00700at 159.674 kb on - strand, within CA265_RS00700at 159.874 kb on + strand, within CA265_RS00700at 159.942 kb on + strand, within CA265_RS00700at 159.981 kb on - strand, within CA265_RS00700at 159.989 kb on - strand, within CA265_RS00700at 160.017 kb on + strand, within CA265_RS00700at 160.054 kb on + strand, within CA265_RS00700at 160.072 kb on + strand, within CA265_RS00700at 160.140 kb on + strand, within CA265_RS00700at 160.141 kb on - strand, within CA265_RS00700at 160.141 kb on - strand, within CA265_RS00700at 160.143 kb on - strand, within CA265_RS00700at 160.167 kb on - strand, within CA265_RS00700at 160.185 kb on - strand, within CA265_RS00700at 160.269 kb on + strand, within CA265_RS00700at 160.270 kb on - strand, within CA265_RS00700at 160.280 kb on + strand, within CA265_RS00700at 160.280 kb on + strand, within CA265_RS00700at 160.332 kb on + strandat 160.391 kb on - strandat 160.478 kb on - strandat 160.498 kb on - strandat 160.522 kb on + strand, within CA265_RS00705at 160.523 kb on - strand, within CA265_RS00705at 160.523 kb on - strand, within CA265_RS00705at 160.523 kb on - strand, within CA265_RS00705at 160.552 kb on + strand, within CA265_RS00705at 160.577 kb on - strand, within CA265_RS00705at 160.596 kb on + strand, within CA265_RS00705at 160.597 kb on - strand, within CA265_RS00705at 160.636 kb on - strand, within CA265_RS00705at 160.636 kb on - strand, within CA265_RS00705at 160.658 kb on - strand, within CA265_RS00705at 160.678 kb on - strand, within CA265_RS00705at 160.678 kb on - strand, within CA265_RS00705at 160.895 kb on + strand, within CA265_RS00705at 160.907 kb on - strand, within CA265_RS00705at 160.907 kb on - strand, within CA265_RS00705at 160.930 kb on - strand, within CA265_RS00705at 161.004 kb on - strand, within CA265_RS00705at 161.005 kb on + strand, within CA265_RS00705at 161.006 kb on - strand, within CA265_RS00705at 161.009 kb on - strand, within CA265_RS00705at 161.009 kb on - strand, within CA265_RS00705at 161.091 kb on - strand, within CA265_RS00705at 161.143 kb on - strand, within CA265_RS00705at 161.166 kb on + strand, within CA265_RS00705at 161.190 kb on + strandat 161.190 kb on + strandat 161.190 kb on + strandat 161.191 kb on - strandat 161.203 kb on + strandat 161.204 kb on - strandat 161.204 kb on - strandat 161.243 kb on - strandat 161.326 kb on - strandat 161.326 kb on - strandat 161.339 kb on + strandat 161.373 kb on + strandat 161.454 kb on + strandat 161.458 kb on + strandat 161.459 kb on - strandat 161.492 kb on - strandat 161.496 kb on + strandat 161.496 kb on + strandat 161.496 kb on + strandat 161.500 kb on + strandat 161.501 kb on - strandat 161.554 kb on + strandat 161.578 kb on - strandat 161.605 kb on - strandat 161.700 kb on + strand, within CA265_RS00710at 161.701 kb on - strand, within CA265_RS00710at 161.744 kb on + strand, within CA265_RS00710at 161.745 kb on - strand, within CA265_RS00710at 161.745 kb on - strand, within CA265_RS00710at 161.803 kb on - strand, within CA265_RS00710at 161.821 kb on + strand, within CA265_RS00710at 161.845 kb on + strand, within CA265_RS00710at 161.845 kb on + strand, within CA265_RS00710at 161.846 kb on - strand, within CA265_RS00710at 161.919 kb on - strand, within CA265_RS00710at 161.920 kb on + strand, within CA265_RS00710at 161.921 kb on - strand, within CA265_RS00710at 161.938 kb on + strand, within CA265_RS00710at 161.949 kb on + strand, within CA265_RS00710at 161.953 kb on - strand, within CA265_RS00710at 161.953 kb on - strand, within CA265_RS00710at 161.981 kb on - strand, within CA265_RS00710at 162.028 kb on + strand, within CA265_RS00710at 162.069 kb on + strand, within CA265_RS00710at 162.072 kb on + strand, within CA265_RS00710at 162.072 kb on + strand, within CA265_RS00710at 162.072 kb on + strand, within CA265_RS00710at 162.073 kb on - strand, within CA265_RS00710at 162.080 kb on + strand, within CA265_RS00710at 162.081 kb on - strand, within CA265_RS00710at 162.099 kb on - strand, within CA265_RS00710at 162.108 kb on - strand, within CA265_RS00710at 162.161 kb on - strand, within CA265_RS00710at 162.175 kb on - strand, within CA265_RS00710at 162.238 kb on + strand, within CA265_RS00710

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml
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159,608 + CA265_RS00700 0.30 +0.4
159,655 + CA265_RS00700 0.34 -1.4
159,674 - CA265_RS00700 0.35 +1.5
159,874 + CA265_RS00700 0.52 -0.4
159,942 + CA265_RS00700 0.58 +0.7
159,981 - CA265_RS00700 0.61 -0.9
159,989 - CA265_RS00700 0.62 -0.1
160,017 + CA265_RS00700 0.64 -0.2
160,054 + CA265_RS00700 0.67 -0.0
160,072 + CA265_RS00700 0.69 -1.5
160,140 + CA265_RS00700 0.74 +0.5
160,141 - CA265_RS00700 0.75 +0.7
160,141 - CA265_RS00700 0.75 +0.7
160,143 - CA265_RS00700 0.75 +0.6
160,167 - CA265_RS00700 0.77 -0.1
160,185 - CA265_RS00700 0.78 -0.2
160,269 + CA265_RS00700 0.85 +0.9
160,270 - CA265_RS00700 0.85 -0.9
160,280 + CA265_RS00700 0.86 +0.2
160,280 + CA265_RS00700 0.86 -0.3
160,332 + +1.2
160,391 - -0.3
160,478 - -0.0
160,498 - +1.0
160,522 + CA265_RS00705 0.12 -1.5
160,523 - CA265_RS00705 0.12 -0.7
160,523 - CA265_RS00705 0.12 -1.0
160,523 - CA265_RS00705 0.12 -0.9
160,552 + CA265_RS00705 0.15 -0.1
160,577 - CA265_RS00705 0.18 +1.5
160,596 + CA265_RS00705 0.21 +0.8
160,597 - CA265_RS00705 0.21 +0.3
160,636 - CA265_RS00705 0.26 +0.3
160,636 - CA265_RS00705 0.26 -2.0
160,658 - CA265_RS00705 0.28 +0.0
160,678 - CA265_RS00705 0.31 +0.8
160,678 - CA265_RS00705 0.31 -0.0
160,895 + CA265_RS00705 0.57 -0.9
160,907 - CA265_RS00705 0.58 -0.5
160,907 - CA265_RS00705 0.58 -0.1
160,930 - CA265_RS00705 0.61 +0.4
161,004 - CA265_RS00705 0.70 -0.6
161,005 + CA265_RS00705 0.70 +1.2
161,006 - CA265_RS00705 0.70 +1.0
161,009 - CA265_RS00705 0.71 +0.2
161,009 - CA265_RS00705 0.71 -0.4
161,091 - CA265_RS00705 0.81 -1.1
161,143 - CA265_RS00705 0.87 +0.2
161,166 + CA265_RS00705 0.90 +0.5
161,190 + -0.8
161,190 + -0.3
161,190 + +1.6
161,191 - -1.2
161,203 + +1.5
161,204 - -0.5
161,204 - -1.8
161,243 - +1.9
161,326 - -0.6
161,326 - -1.1
161,339 + -0.8
161,373 + +0.9
161,454 + -0.1
161,458 + +0.6
161,459 - -0.5
161,492 - +0.6
161,496 + +0.1
161,496 + -1.1
161,496 + +0.4
161,500 + +0.4
161,501 - +0.4
161,554 + +0.4
161,578 - +1.2
161,605 - -0.1
161,700 + CA265_RS00710 0.11 -0.1
161,701 - CA265_RS00710 0.11 +0.9
161,744 + CA265_RS00710 0.12 +1.1
161,745 - CA265_RS00710 0.12 +0.1
161,745 - CA265_RS00710 0.12 -2.2
161,803 - CA265_RS00710 0.13 +0.8
161,821 + CA265_RS00710 0.14 -0.1
161,845 + CA265_RS00710 0.14 -1.8
161,845 + CA265_RS00710 0.14 +1.5
161,846 - CA265_RS00710 0.15 -0.0
161,919 - CA265_RS00710 0.16 -0.4
161,920 + CA265_RS00710 0.16 -0.5
161,921 - CA265_RS00710 0.16 +0.2
161,938 + CA265_RS00710 0.17 +0.7
161,949 + CA265_RS00710 0.17 -0.6
161,953 - CA265_RS00710 0.17 +0.1
161,953 - CA265_RS00710 0.17 -1.4
161,981 - CA265_RS00710 0.18 +0.6
162,028 + CA265_RS00710 0.19 -2.4
162,069 + CA265_RS00710 0.20 -0.4
162,072 + CA265_RS00710 0.20 +1.7
162,072 + CA265_RS00710 0.20 -0.9
162,072 + CA265_RS00710 0.20 -2.6
162,073 - CA265_RS00710 0.20 -0.1
162,080 + CA265_RS00710 0.20 -1.6
162,081 - CA265_RS00710 0.20 +0.3
162,099 - CA265_RS00710 0.21 +1.2
162,108 - CA265_RS00710 0.21 +0.3
162,161 - CA265_RS00710 0.22 +0.5
162,175 - CA265_RS00710 0.22 +0.6
162,238 + CA265_RS00710 0.24 +1.1

Or see this region's nucleotide sequence