Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30160

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30155 and AO356_30160 are separated by 383 nucleotidesAO356_30160 and AO356_30165 are separated by 975 nucleotides AO356_30155: AO356_30155 - hypothetical protein, at 7,038,140 to 7,038,901 _30155 AO356_30160: AO356_30160 - hypothetical protein, at 7,039,285 to 7,039,632 _30160 AO356_30165: AO356_30165 - hypothetical protein, at 7,040,608 to 7,041,681 _30165 Position (kb) 7039 7040Strain fitness (log2 ratio) -1 0 1 2at 7038.293 kb on - strand, within AO356_30155at 7038.334 kb on - strand, within AO356_30155at 7038.385 kb on - strand, within AO356_30155at 7038.426 kb on + strand, within AO356_30155at 7038.426 kb on + strand, within AO356_30155at 7038.427 kb on - strand, within AO356_30155at 7038.496 kb on - strand, within AO356_30155at 7038.499 kb on + strand, within AO356_30155at 7038.500 kb on - strand, within AO356_30155at 7038.644 kb on - strand, within AO356_30155at 7038.784 kb on + strand, within AO356_30155at 7038.917 kb on - strandat 7038.948 kb on + strandat 7038.949 kb on - strandat 7038.991 kb on + strandat 7039.171 kb on + strandat 7039.171 kb on + strandat 7039.171 kb on + strandat 7039.171 kb on + strandat 7039.172 kb on - strandat 7039.172 kb on - strandat 7039.332 kb on + strand, within AO356_30160at 7039.373 kb on + strand, within AO356_30160at 7039.373 kb on + strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.374 kb on - strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.375 kb on + strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.376 kb on - strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.381 kb on + strand, within AO356_30160at 7039.438 kb on + strand, within AO356_30160at 7039.455 kb on + strand, within AO356_30160at 7039.455 kb on + strand, within AO356_30160at 7039.455 kb on + strand, within AO356_30160at 7039.456 kb on - strand, within AO356_30160at 7039.456 kb on - strand, within AO356_30160at 7039.456 kb on - strand, within AO356_30160at 7039.613 kb on + strandat 7039.647 kb on + strandat 7039.648 kb on - strandat 7039.689 kb on + strandat 7039.689 kb on + strandat 7039.766 kb on - strandat 7039.809 kb on + strandat 7039.809 kb on + strandat 7039.855 kb on + strandat 7039.855 kb on + strandat 7039.856 kb on - strandat 7039.860 kb on - strandat 7039.960 kb on - strandat 7040.037 kb on + strandat 7040.118 kb on - strandat 7040.190 kb on + strandat 7040.229 kb on + strandat 7040.284 kb on + strandat 7040.333 kb on + strandat 7040.334 kb on - strandat 7040.464 kb on + strandat 7040.464 kb on + strandat 7040.465 kb on - strandat 7040.465 kb on - strandat 7040.465 kb on - strandat 7040.465 kb on - strandat 7040.467 kb on + strandat 7040.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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7,038,293 - AO356_30155 0.20 -0.8
7,038,334 - AO356_30155 0.25 +0.6
7,038,385 - AO356_30155 0.32 -1.1
7,038,426 + AO356_30155 0.38 -0.0
7,038,426 + AO356_30155 0.38 +1.5
7,038,427 - AO356_30155 0.38 -0.0
7,038,496 - AO356_30155 0.47 +1.8
7,038,499 + AO356_30155 0.47 -0.3
7,038,500 - AO356_30155 0.47 +0.5
7,038,644 - AO356_30155 0.66 +0.5
7,038,784 + AO356_30155 0.85 +0.1
7,038,917 - +0.6
7,038,948 + -1.3
7,038,949 - -1.3
7,038,991 + -0.3
7,039,171 + -0.0
7,039,171 + +0.3
7,039,171 + -0.1
7,039,171 + +0.7
7,039,172 - -0.2
7,039,172 - +0.5
7,039,332 + AO356_30160 0.14 -0.6
7,039,373 + AO356_30160 0.25 -0.4
7,039,373 + AO356_30160 0.25 -0.8
7,039,374 - AO356_30160 0.26 -0.6
7,039,374 - AO356_30160 0.26 -0.3
7,039,374 - AO356_30160 0.26 +1.4
7,039,374 - AO356_30160 0.26 -0.7
7,039,374 - AO356_30160 0.26 +0.7
7,039,374 - AO356_30160 0.26 -0.1
7,039,374 - AO356_30160 0.26 +0.2
7,039,375 + AO356_30160 0.26 +0.1
7,039,375 + AO356_30160 0.26 -0.9
7,039,375 + AO356_30160 0.26 -0.1
7,039,375 + AO356_30160 0.26 +0.2
7,039,375 + AO356_30160 0.26 +0.4
7,039,376 - AO356_30160 0.26 -0.2
7,039,376 - AO356_30160 0.26 -0.2
7,039,376 - AO356_30160 0.26 -1.7
7,039,376 - AO356_30160 0.26 -0.2
7,039,376 - AO356_30160 0.26 -1.2
7,039,376 - AO356_30160 0.26 +0.2
7,039,376 - AO356_30160 0.26 -1.1
7,039,381 + AO356_30160 0.28 +0.6
7,039,381 + AO356_30160 0.28 -0.4
7,039,381 + AO356_30160 0.28 -0.0
7,039,381 + AO356_30160 0.28 -1.1
7,039,381 + AO356_30160 0.28 -0.9
7,039,438 + AO356_30160 0.44 -0.5
7,039,455 + AO356_30160 0.49 +0.3
7,039,455 + AO356_30160 0.49 -0.2
7,039,455 + AO356_30160 0.49 +0.4
7,039,456 - AO356_30160 0.49 +0.4
7,039,456 - AO356_30160 0.49 +0.3
7,039,456 - AO356_30160 0.49 +0.3
7,039,613 + -0.6
7,039,647 + -0.2
7,039,648 - +0.8
7,039,689 + +1.2
7,039,689 + +0.3
7,039,766 - +0.5
7,039,809 + +0.4
7,039,809 + +0.4
7,039,855 + +0.4
7,039,855 + +0.4
7,039,856 - -0.4
7,039,860 - -0.3
7,039,960 - -0.4
7,040,037 + +1.9
7,040,118 - +0.1
7,040,190 + -0.6
7,040,229 + -1.5
7,040,284 + -0.5
7,040,333 + +0.3
7,040,334 - +0.3
7,040,464 + -1.0
7,040,464 + -1.1
7,040,465 - -0.8
7,040,465 - -0.0
7,040,465 - -0.0
7,040,465 - -0.5
7,040,467 + -0.1
7,040,467 + -0.4

Or see this region's nucleotide sequence