Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00808 and SMc00809 are separated by 370 nucleotides SMc00809 and SMc00842 are separated by 994 nucleotides
SMc00808: SMc00808 - chromate transporter, at 827,099 to 828,541
SMc00808
SMc00809: SMc00809 - signal peptide protein, at 828,912 to 829,178
SMc00809
SMc00842: SMc00842 - tRNA-Gln, at 830,173 to 830,246
SMc00842
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 828.032 kb on + strand, within SMc00808 at 828.032 kb on + strand, within SMc00808 at 828.032 kb on + strand, within SMc00808 at 828.033 kb on - strand, within SMc00808 at 828.159 kb on + strand, within SMc00808 at 828.159 kb on + strand, within SMc00808 at 828.159 kb on + strand, within SMc00808 at 828.256 kb on + strand, within SMc00808 at 828.259 kb on - strand, within SMc00808 at 828.259 kb on - strand, within SMc00808 at 828.259 kb on - strand, within SMc00808 at 828.259 kb on - strand, within SMc00808 at 828.259 kb on - strand, within SMc00808 at 828.303 kb on + strand, within SMc00808 at 828.303 kb on + strand, within SMc00808 at 828.303 kb on + strand, within SMc00808 at 828.304 kb on - strand, within SMc00808 at 828.451 kb on + strand at 828.451 kb on + strand at 828.452 kb on - strand at 828.452 kb on - strand at 828.547 kb on + strand at 828.547 kb on + strand at 828.547 kb on + strand at 828.547 kb on + strand at 828.547 kb on + strand at 828.548 kb on - strand at 828.548 kb on - strand at 828.548 kb on - strand at 828.548 kb on - strand at 828.611 kb on - strand at 828.611 kb on - strand at 828.842 kb on + strand at 828.894 kb on + strand at 828.895 kb on - strand at 828.925 kb on + strand at 828.925 kb on + strand at 828.925 kb on + strand at 828.926 kb on - strand at 828.926 kb on - strand at 828.926 kb on - strand at 828.931 kb on + strand at 828.931 kb on + strand at 828.973 kb on + strand, within SMc00809 at 829.021 kb on + strand, within SMc00809 at 829.022 kb on - strand, within SMc00809 at 829.033 kb on + strand, within SMc00809 at 829.033 kb on + strand, within SMc00809 at 829.033 kb on + strand, within SMc00809 at 829.034 kb on - strand, within SMc00809 at 829.034 kb on - strand, within SMc00809 at 829.034 kb on - strand, within SMc00809 at 829.034 kb on - strand, within SMc00809 at 829.048 kb on + strand, within SMc00809 at 829.048 kb on + strand, within SMc00809 at 829.048 kb on + strand, within SMc00809 at 829.048 kb on + strand, within SMc00809 at 829.049 kb on - strand, within SMc00809 at 829.049 kb on - strand, within SMc00809 at 829.066 kb on + strand, within SMc00809 at 829.206 kb on - strand at 829.234 kb on + strand at 829.234 kb on + strand at 829.299 kb on + strand at 829.300 kb on - strand at 829.369 kb on - strand at 829.370 kb on + strand at 829.371 kb on - strand at 829.371 kb on - strand at 829.371 kb on - strand at 829.371 kb on - strand at 829.382 kb on - strand at 829.476 kb on + strand at 829.916 kb on - strand at 830.007 kb on + strand at 830.007 kb on + strand at 830.007 kb on + strand at 830.067 kb on + strand at 830.068 kb on - strand at 830.095 kb on + strand at 830.096 kb on - strand at 830.125 kb on - strand at 830.128 kb on + strand at 830.145 kb on - strand at 830.148 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 828,032 + SMc00808 0.65 +1.5 828,032 + SMc00808 0.65 -0.6 828,032 + SMc00808 0.65 -0.4 828,033 - SMc00808 0.65 +0.1 828,159 + SMc00808 0.73 -0.7 828,159 + SMc00808 0.73 -0.7 828,159 + SMc00808 0.73 -0.5 828,256 + SMc00808 0.80 +0.4 828,259 - SMc00808 0.80 +0.8 828,259 - SMc00808 0.80 -0.8 828,259 - SMc00808 0.80 +0.3 828,259 - SMc00808 0.80 -0.2 828,259 - SMc00808 0.80 -3.0 828,303 + SMc00808 0.83 -0.7 828,303 + SMc00808 0.83 -1.0 828,303 + SMc00808 0.83 -0.5 828,304 - SMc00808 0.84 -1.5 828,451 + -0.1 828,451 + +0.5 828,452 - +0.5 828,452 - -1.7 828,547 + +0.2 828,547 + -1.3 828,547 + -0.3 828,547 + -0.7 828,547 + +0.1 828,548 - +1.5 828,548 - -1.2 828,548 - -0.3 828,548 - -0.5 828,611 - -0.9 828,611 - +0.2 828,842 + -1.0 828,894 + -0.8 828,895 - -1.0 828,925 + -0.6 828,925 + +1.1 828,925 + -0.3 828,926 - -1.6 828,926 - -1.4 828,926 - -0.5 828,931 + +0.1 828,931 + +0.3 828,973 + SMc00809 0.23 -0.5 829,021 + SMc00809 0.41 +0.1 829,022 - SMc00809 0.41 -0.2 829,033 + SMc00809 0.45 -0.3 829,033 + SMc00809 0.45 -1.0 829,033 + SMc00809 0.45 +1.3 829,034 - SMc00809 0.46 -0.7 829,034 - SMc00809 0.46 -0.8 829,034 - SMc00809 0.46 -0.4 829,034 - SMc00809 0.46 -0.5 829,048 + SMc00809 0.51 -1.2 829,048 + SMc00809 0.51 -1.0 829,048 + SMc00809 0.51 -1.4 829,048 + SMc00809 0.51 -1.8 829,049 - SMc00809 0.51 -1.3 829,049 - SMc00809 0.51 -1.0 829,066 + SMc00809 0.58 -0.2 829,206 - -0.8 829,234 + -0.6 829,234 + -0.8 829,299 + -1.2 829,300 - -1.6 829,369 - -0.1 829,370 + -0.9 829,371 - -0.3 829,371 - -0.2 829,371 - -1.3 829,371 - -0.2 829,382 - -0.1 829,476 + -1.7 829,916 - -0.0 830,007 + -0.9 830,007 + -0.7 830,007 + -0.9 830,067 + -0.8 830,068 - -0.6 830,095 + +0.1 830,096 - -0.1 830,125 - -1.5 830,128 + -0.2 830,145 - -0.0 830,148 + -0.4
Or see this region's nucleotide sequence