Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00513 and SMc00512 overlap by 1 nucleotides SMc00512 and SMc00511 are separated by 62 nucleotides SMc00511 and SMc00510 overlap by 4 nucleotides
SMc00513: SMc00513 - amino acid-binding periplasmic protein, at 1,899,714 to 1,900,802
SMc00513
SMc00512: SMc00512 - hypothetical protein, at 1,900,802 to 1,901,806
SMc00512
SMc00511: SMc00511 - D-ribulose-5-phosphate 3-epimerase, at 1,901,869 to 1,902,549
SMc00511
SMc00510: SMc00510 - hypothetical protein, at 1,902,546 to 1,903,283
SMc00510
Position (kb)
1900
1901
1902 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1900.259 kb on + strand, within SMc00513 at 1900.261 kb on + strand, within SMc00513 at 1900.261 kb on + strand, within SMc00513 at 1900.262 kb on - strand, within SMc00513 at 1900.262 kb on - strand, within SMc00513 at 1900.284 kb on + strand, within SMc00513 at 1900.285 kb on - strand, within SMc00513 at 1900.285 kb on - strand, within SMc00513 at 1900.285 kb on - strand, within SMc00513 at 1900.420 kb on + strand, within SMc00513 at 1900.575 kb on + strand, within SMc00513 at 1900.576 kb on - strand, within SMc00513 at 1900.709 kb on + strand at 1900.793 kb on + strand at 1900.867 kb on + strand at 1900.868 kb on - strand at 1900.935 kb on + strand, within SMc00512 at 1900.936 kb on - strand, within SMc00512 at 1900.936 kb on - strand, within SMc00512 at 1901.307 kb on + strand, within SMc00512 at 1901.308 kb on - strand, within SMc00512 at 1901.308 kb on - strand, within SMc00512 at 1901.560 kb on + strand, within SMc00512 at 1901.617 kb on + strand, within SMc00512 at 1901.618 kb on - strand, within SMc00512 at 1901.749 kb on - strand at 1901.750 kb on + strand at 1901.750 kb on + strand at 1901.751 kb on - strand at 1901.751 kb on - strand at 1901.842 kb on + strand at 1901.843 kb on - strand at 1902.137 kb on + strand, within SMc00511 at 1902.138 kb on - strand, within SMc00511 at 1902.138 kb on - strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.253 kb on + strand, within SMc00511 at 1902.254 kb on - strand, within SMc00511 at 1902.618 kb on + strand at 1902.678 kb on + strand, within SMc00510 at 1902.678 kb on + strand, within SMc00510 at 1902.683 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.720 kb on + strand, within SMc00510 at 1902.721 kb on - strand, within SMc00510 at 1902.721 kb on - strand, within SMc00510
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 1,900,259 + SMc00513 0.50 -1.2 1,900,261 + SMc00513 0.50 -0.9 1,900,261 + SMc00513 0.50 -0.1 1,900,262 - SMc00513 0.50 +0.6 1,900,262 - SMc00513 0.50 +0.7 1,900,284 + SMc00513 0.52 +0.3 1,900,285 - SMc00513 0.52 -0.2 1,900,285 - SMc00513 0.52 -0.7 1,900,285 - SMc00513 0.52 -1.3 1,900,420 + SMc00513 0.65 -0.2 1,900,575 + SMc00513 0.79 -1.8 1,900,576 - SMc00513 0.79 -0.3 1,900,709 + -0.5 1,900,793 + +0.2 1,900,867 + -0.0 1,900,868 - +0.4 1,900,935 + SMc00512 0.13 +0.6 1,900,936 - SMc00512 0.13 +0.0 1,900,936 - SMc00512 0.13 +0.1 1,901,307 + SMc00512 0.50 +1.0 1,901,308 - SMc00512 0.50 -0.4 1,901,308 - SMc00512 0.50 +0.3 1,901,560 + SMc00512 0.75 +0.7 1,901,617 + SMc00512 0.81 +0.8 1,901,618 - SMc00512 0.81 +0.2 1,901,749 - +0.0 1,901,750 + +0.2 1,901,750 + -0.2 1,901,751 - +2.1 1,901,751 - -0.8 1,901,842 + -0.5 1,901,843 - -0.8 1,902,137 + SMc00511 0.39 -1.9 1,902,138 - SMc00511 0.40 -2.1 1,902,138 - SMc00511 0.40 -4.4 1,902,253 + SMc00511 0.56 -1.4 1,902,253 + SMc00511 0.56 -1.3 1,902,253 + SMc00511 0.56 -3.1 1,902,254 - SMc00511 0.57 -0.5 1,902,618 + -0.2 1,902,678 + SMc00510 0.18 -0.1 1,902,678 + SMc00510 0.18 +0.1 1,902,683 + SMc00510 0.19 +0.2 1,902,720 + SMc00510 0.24 +0.4 1,902,720 + SMc00510 0.24 +1.7 1,902,720 + SMc00510 0.24 -0.4 1,902,720 + SMc00510 0.24 +0.4 1,902,721 - SMc00510 0.24 -0.5 1,902,721 - SMc00510 0.24 -0.1
Or see this region's nucleotide sequence