Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0501 and SMa0503 are separated by 1 nucleotides SMa0503 and SMa0506 are separated by 57 nucleotides SMa0506 and SMa0508 are separated by 49 nucleotides SMa0508 and SMa0510 are separated by 72 nucleotides
SMa0501: SMa0501 - ABC transporter permease, at 272,734 to 273,420
SMa0501
SMa0503: SMa0503 - ABC transporter permease, at 273,422 to 274,078
SMa0503
SMa0506: SMa0506 - ABC transporter periplasmic substrate-binding protein, at 274,136 to 274,933
SMa0506
SMa0508: SMa0508 - ABC transporter ATP-binding protein, at 274,983 to 275,714
SMa0508
SMa0510: SMa0510 - D-isomer specific 2-hydroxyacid dehydrogenase, at 275,787 to 276,734
SMa0510
Position (kb) 274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 273.142 kb on + strand, within SMa0501 at 273.143 kb on - strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.325 kb on + strand, within SMa0501 at 273.326 kb on - strand, within SMa0501 at 273.326 kb on - strand, within SMa0501 at 273.462 kb on - strand at 273.462 kb on - strand at 273.462 kb on - strand at 273.584 kb on + strand, within SMa0503 at 273.584 kb on + strand, within SMa0503 at 273.584 kb on + strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.585 kb on - strand, within SMa0503 at 273.635 kb on + strand, within SMa0503 at 273.635 kb on + strand, within SMa0503 at 273.638 kb on + strand, within SMa0503 at 273.639 kb on - strand, within SMa0503 at 273.800 kb on + strand, within SMa0503 at 273.905 kb on - strand, within SMa0503 at 273.998 kb on + strand, within SMa0503 at 273.998 kb on + strand, within SMa0503 at 274.234 kb on + strand, within SMa0506 at 274.454 kb on + strand, within SMa0506 at 274.493 kb on + strand, within SMa0506 at 274.494 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.716 kb on - strand, within SMa0506 at 274.776 kb on - strand, within SMa0506 at 274.789 kb on - strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 274.790 kb on + strand, within SMa0506 at 275.047 kb on + strand at 275.244 kb on + strand, within SMa0508 at 275.245 kb on - strand, within SMa0508 at 275.245 kb on - strand, within SMa0508 at 275.386 kb on - strand, within SMa0508 at 275.708 kb on - strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.804 kb on - strand at 275.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 273,142 + SMa0501 0.59 -0.1 273,143 - SMa0501 0.60 -1.0 273,325 + SMa0501 0.86 -0.9 273,325 + SMa0501 0.86 -1.0 273,325 + SMa0501 0.86 +0.8 273,326 - SMa0501 0.86 +1.4 273,326 - SMa0501 0.86 +0.6 273,462 - +0.3 273,462 - +0.4 273,462 - -0.1 273,584 + SMa0503 0.25 -1.0 273,584 + SMa0503 0.25 +0.1 273,584 + SMa0503 0.25 -3.7 273,585 - SMa0503 0.25 -0.2 273,585 - SMa0503 0.25 +0.1 273,585 - SMa0503 0.25 -0.3 273,635 + SMa0503 0.32 -0.6 273,635 + SMa0503 0.32 -0.9 273,638 + SMa0503 0.33 -0.6 273,639 - SMa0503 0.33 +0.0 273,800 + SMa0503 0.58 +0.8 273,905 - SMa0503 0.74 +0.7 273,998 + SMa0503 0.88 -0.5 273,998 + SMa0503 0.88 +0.2 274,234 + SMa0506 0.12 +0.4 274,454 + SMa0506 0.40 -3.5 274,493 + SMa0506 0.45 +0.7 274,494 - SMa0506 0.45 +0.9 274,716 - SMa0506 0.73 +0.2 274,716 - SMa0506 0.73 +0.4 274,716 - SMa0506 0.73 +0.0 274,776 - SMa0506 0.80 +0.3 274,789 - SMa0506 0.82 +0.2 274,790 + SMa0506 0.82 +0.9 274,790 + SMa0506 0.82 +1.8 275,047 + -0.2 275,244 + SMa0508 0.36 +0.4 275,245 - SMa0508 0.36 -0.0 275,245 - SMa0508 0.36 -0.1 275,386 - SMa0508 0.55 -0.8 275,708 - +1.0 275,803 + -0.2 275,803 + -0.3 275,803 + -0.2 275,804 - +0.2 275,804 - +0.3
Or see this region's nucleotide sequence