Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21123

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21122 and SM_b21123 are separated by 14 nucleotidesSM_b21123 and SM_b21124 are separated by 16 nucleotides SM_b21122: SM_b21122 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data), at 760,760 to 762,367 _b21122 SM_b21123: SM_b21123 - translation initiation inhibitor, at 762,382 to 762,765 _b21123 SM_b21124: SM_b21124 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data), at 762,782 to 764,770 _b21124 Position (kb) 762 763Strain fitness (log2 ratio) -2 -1 0 1at 761.390 kb on - strand, within SM_b21122at 761.609 kb on + strand, within SM_b21122at 761.660 kb on + strand, within SM_b21122at 761.661 kb on - strand, within SM_b21122at 761.912 kb on + strand, within SM_b21122at 762.023 kb on + strand, within SM_b21122at 762.210 kb on + strandat 762.211 kb on - strandat 762.236 kb on + strandat 762.237 kb on - strandat 762.237 kb on - strandat 762.497 kb on + strand, within SM_b21123at 762.670 kb on + strand, within SM_b21123at 762.670 kb on + strand, within SM_b21123at 762.671 kb on - strand, within SM_b21123at 762.763 kb on + strandat 762.763 kb on + strandat 762.764 kb on - strandat 762.782 kb on - strandat 762.782 kb on - strandat 762.959 kb on + strandat 762.977 kb on - strandat 763.083 kb on + strand, within SM_b21124at 763.083 kb on + strand, within SM_b21124at 763.083 kb on + strand, within SM_b21124at 763.084 kb on - strand, within SM_b21124at 763.084 kb on - strand, within SM_b21124at 763.441 kb on + strand, within SM_b21124at 763.497 kb on + strand, within SM_b21124at 763.583 kb on + strand, within SM_b21124at 763.649 kb on + strand, within SM_b21124at 763.745 kb on - strand, within SM_b21124

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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761,390 - SM_b21122 0.39 -0.6
761,609 + SM_b21122 0.53 +0.8
761,660 + SM_b21122 0.56 -0.8
761,661 - SM_b21122 0.56 +0.0
761,912 + SM_b21122 0.72 +0.7
762,023 + SM_b21122 0.79 -0.5
762,210 + -0.5
762,211 - +0.2
762,236 + +0.1
762,237 - +0.8
762,237 - +1.2
762,497 + SM_b21123 0.30 -0.2
762,670 + SM_b21123 0.75 -0.4
762,670 + SM_b21123 0.75 -0.7
762,671 - SM_b21123 0.75 -0.3
762,763 + -0.3
762,763 + +0.1
762,764 - +0.4
762,782 - -0.3
762,782 - +0.7
762,959 + +0.1
762,977 - +1.2
763,083 + SM_b21124 0.15 -0.3
763,083 + SM_b21124 0.15 -0.1
763,083 + SM_b21124 0.15 +0.5
763,084 - SM_b21124 0.15 -2.3
763,084 - SM_b21124 0.15 +0.1
763,441 + SM_b21124 0.33 +0.5
763,497 + SM_b21124 0.36 -0.5
763,583 + SM_b21124 0.40 +0.1
763,649 + SM_b21124 0.44 +0.4
763,745 - SM_b21124 0.48 -0.2

Or see this region's nucleotide sequence