Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4961

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4960 and Psyr_4961 overlap by 4 nucleotidesPsyr_4961 and Psyr_4962 are separated by 30 nucleotides Psyr_4960: Psyr_4960 - protein of unknown function DUF876, at 5,880,121 to 5,881,464 _4960 Psyr_4961: Psyr_4961 - conserved hypothetical protein, at 5,881,461 to 5,882,174 _4961 Psyr_4962: Psyr_4962 - ImcF-related:Protein of unknown function DUF1215, at 5,882,205 to 5,886,137 _4962 Position (kb) 5881 5882 5883Strain fitness (log2 ratio) -2 -1 0 1 2at 5880.461 kb on - strand, within Psyr_4960at 5880.461 kb on - strand, within Psyr_4960at 5880.614 kb on - strand, within Psyr_4960at 5880.619 kb on + strand, within Psyr_4960at 5880.620 kb on - strand, within Psyr_4960at 5880.620 kb on - strand, within Psyr_4960at 5880.620 kb on - strand, within Psyr_4960at 5880.620 kb on - strand, within Psyr_4960at 5880.852 kb on + strand, within Psyr_4960at 5880.922 kb on + strand, within Psyr_4960at 5880.922 kb on + strand, within Psyr_4960at 5880.923 kb on - strand, within Psyr_4960at 5880.923 kb on - strand, within Psyr_4960at 5881.118 kb on - strand, within Psyr_4960at 5881.118 kb on - strand, within Psyr_4960at 5881.118 kb on - strand, within Psyr_4960at 5881.118 kb on - strand, within Psyr_4960at 5881.165 kb on + strand, within Psyr_4960at 5881.165 kb on + strand, within Psyr_4960at 5881.165 kb on + strand, within Psyr_4960at 5881.166 kb on - strand, within Psyr_4960at 5881.166 kb on - strand, within Psyr_4960at 5881.166 kb on - strand, within Psyr_4960at 5881.342 kb on + strandat 5881.342 kb on + strandat 5881.342 kb on + strandat 5881.342 kb on + strandat 5881.342 kb on + strandat 5881.342 kb on + strandat 5881.343 kb on - strandat 5881.343 kb on - strandat 5881.343 kb on - strandat 5881.343 kb on - strandat 5881.343 kb on - strandat 5881.372 kb on + strandat 5881.373 kb on - strandat 5881.373 kb on - strandat 5881.409 kb on - strandat 5881.426 kb on - strandat 5881.458 kb on + strandat 5881.458 kb on + strandat 5881.459 kb on - strandat 5881.459 kb on - strandat 5881.459 kb on - strandat 5881.511 kb on + strandat 5881.511 kb on + strandat 5881.511 kb on + strandat 5881.512 kb on - strandat 5881.512 kb on - strandat 5881.512 kb on - strandat 5881.653 kb on + strand, within Psyr_4961at 5881.653 kb on + strand, within Psyr_4961at 5881.653 kb on + strand, within Psyr_4961at 5881.653 kb on + strand, within Psyr_4961at 5881.653 kb on + strand, within Psyr_4961at 5881.653 kb on + strand, within Psyr_4961at 5881.654 kb on - strand, within Psyr_4961at 5881.654 kb on - strand, within Psyr_4961at 5881.684 kb on - strand, within Psyr_4961at 5881.776 kb on + strand, within Psyr_4961at 5881.777 kb on - strand, within Psyr_4961at 5881.869 kb on + strand, within Psyr_4961at 5882.053 kb on + strand, within Psyr_4961at 5882.062 kb on - strand, within Psyr_4961at 5882.083 kb on + strand, within Psyr_4961at 5882.084 kb on - strand, within Psyr_4961at 5882.084 kb on - strand, within Psyr_4961at 5882.084 kb on - strand, within Psyr_4961at 5882.097 kb on + strand, within Psyr_4961at 5882.098 kb on - strand, within Psyr_4961at 5882.216 kb on - strandat 5882.216 kb on - strandat 5882.355 kb on + strandat 5882.356 kb on - strandat 5882.356 kb on - strandat 5882.382 kb on + strandat 5882.575 kb on - strandat 5882.694 kb on + strand, within Psyr_4962at 5882.694 kb on + strand, within Psyr_4962at 5882.694 kb on + strand, within Psyr_4962at 5882.695 kb on - strand, within Psyr_4962at 5882.695 kb on - strand, within Psyr_4962at 5882.695 kb on - strand, within Psyr_4962at 5882.695 kb on - strand, within Psyr_4962at 5882.736 kb on + strand, within Psyr_4962at 5882.916 kb on + strand, within Psyr_4962at 5882.916 kb on + strand, within Psyr_4962at 5882.916 kb on + strand, within Psyr_4962at 5882.917 kb on - strand, within Psyr_4962at 5882.949 kb on + strand, within Psyr_4962at 5882.949 kb on + strand, within Psyr_4962at 5882.949 kb on + strand, within Psyr_4962at 5882.950 kb on - strand, within Psyr_4962at 5882.950 kb on - strand, within Psyr_4962

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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5,880,461 - Psyr_4960 0.25 -0.4
5,880,461 - Psyr_4960 0.25 -1.2
5,880,614 - Psyr_4960 0.37 +0.3
5,880,619 + Psyr_4960 0.37 +0.7
5,880,620 - Psyr_4960 0.37 -1.8
5,880,620 - Psyr_4960 0.37 -1.1
5,880,620 - Psyr_4960 0.37 +0.5
5,880,620 - Psyr_4960 0.37 +0.7
5,880,852 + Psyr_4960 0.54 +1.4
5,880,922 + Psyr_4960 0.60 -0.3
5,880,922 + Psyr_4960 0.60 -0.6
5,880,923 - Psyr_4960 0.60 +0.9
5,880,923 - Psyr_4960 0.60 -0.1
5,881,118 - Psyr_4960 0.74 +0.1
5,881,118 - Psyr_4960 0.74 -0.1
5,881,118 - Psyr_4960 0.74 -0.4
5,881,118 - Psyr_4960 0.74 -0.3
5,881,165 + Psyr_4960 0.78 +0.2
5,881,165 + Psyr_4960 0.78 -0.6
5,881,165 + Psyr_4960 0.78 -0.1
5,881,166 - Psyr_4960 0.78 +0.8
5,881,166 - Psyr_4960 0.78 +0.5
5,881,166 - Psyr_4960 0.78 -0.4
5,881,342 + +1.4
5,881,342 + +0.3
5,881,342 + +0.0
5,881,342 + +0.5
5,881,342 + -1.2
5,881,342 + -0.6
5,881,343 - +0.3
5,881,343 - +0.9
5,881,343 - -1.9
5,881,343 - -0.9
5,881,343 - -2.1
5,881,372 + -0.9
5,881,373 - -1.2
5,881,373 - -1.0
5,881,409 - -0.7
5,881,426 - +1.4
5,881,458 + -0.9
5,881,458 + -0.5
5,881,459 - +0.1
5,881,459 - +0.5
5,881,459 - -0.2
5,881,511 + -0.1
5,881,511 + +1.2
5,881,511 + -0.8
5,881,512 - +0.8
5,881,512 - +0.5
5,881,512 - +0.7
5,881,653 + Psyr_4961 0.27 -0.1
5,881,653 + Psyr_4961 0.27 +0.6
5,881,653 + Psyr_4961 0.27 +0.1
5,881,653 + Psyr_4961 0.27 +0.3
5,881,653 + Psyr_4961 0.27 -0.5
5,881,653 + Psyr_4961 0.27 +1.0
5,881,654 - Psyr_4961 0.27 -1.1
5,881,654 - Psyr_4961 0.27 +0.7
5,881,684 - Psyr_4961 0.31 +0.8
5,881,776 + Psyr_4961 0.44 +0.2
5,881,777 - Psyr_4961 0.44 +2.5
5,881,869 + Psyr_4961 0.57 -0.5
5,882,053 + Psyr_4961 0.83 +0.4
5,882,062 - Psyr_4961 0.84 +1.2
5,882,083 + Psyr_4961 0.87 -1.4
5,882,084 - Psyr_4961 0.87 +1.9
5,882,084 - Psyr_4961 0.87 +0.3
5,882,084 - Psyr_4961 0.87 -0.9
5,882,097 + Psyr_4961 0.89 +0.3
5,882,098 - Psyr_4961 0.89 -0.5
5,882,216 - +0.9
5,882,216 - +1.3
5,882,355 + -1.3
5,882,356 - -0.1
5,882,356 - +0.5
5,882,382 + -0.5
5,882,575 - +0.1
5,882,694 + Psyr_4962 0.12 +0.4
5,882,694 + Psyr_4962 0.12 -0.4
5,882,694 + Psyr_4962 0.12 -0.5
5,882,695 - Psyr_4962 0.12 -0.1
5,882,695 - Psyr_4962 0.12 +1.5
5,882,695 - Psyr_4962 0.12 -0.3
5,882,695 - Psyr_4962 0.12 +0.3
5,882,736 + Psyr_4962 0.14 -0.4
5,882,916 + Psyr_4962 0.18 -0.1
5,882,916 + Psyr_4962 0.18 +0.3
5,882,916 + Psyr_4962 0.18 +1.1
5,882,917 - Psyr_4962 0.18 -0.7
5,882,949 + Psyr_4962 0.19 +1.5
5,882,949 + Psyr_4962 0.19 -0.2
5,882,949 + Psyr_4962 0.19 +2.5
5,882,950 - Psyr_4962 0.19 +0.1
5,882,950 - Psyr_4962 0.19 -0.4

Or see this region's nucleotide sequence