Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4958 and Psyr_4959 are separated by 25 nucleotides Psyr_4959 and Psyr_4960 overlap by 4 nucleotides
Psyr_4958: Psyr_4958 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 5,876,740 to 5,879,343
_4958
Psyr_4959: Psyr_4959 - conserved hypothetical protein, at 5,879,369 to 5,880,124
_4959
Psyr_4960: Psyr_4960 - protein of unknown function DUF876, at 5,880,121 to 5,881,464
_4960
Position (kb) 5879
5880
5881 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5878.612 kb on + strand, within Psyr_4958 at 5878.613 kb on - strand, within Psyr_4958 at 5878.613 kb on - strand, within Psyr_4958 at 5878.613 kb on - strand, within Psyr_4958 at 5878.626 kb on + strand, within Psyr_4958 at 5878.627 kb on - strand, within Psyr_4958 at 5878.756 kb on + strand, within Psyr_4958 at 5878.756 kb on + strand, within Psyr_4958 at 5878.756 kb on + strand, within Psyr_4958 at 5878.757 kb on - strand, within Psyr_4958 at 5878.758 kb on + strand, within Psyr_4958 at 5878.758 kb on + strand, within Psyr_4958 at 5878.759 kb on - strand, within Psyr_4958 at 5879.042 kb on - strand, within Psyr_4958 at 5879.256 kb on - strand at 5879.329 kb on + strand at 5879.329 kb on + strand at 5879.329 kb on + strand at 5879.356 kb on + strand at 5879.356 kb on + strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.357 kb on - strand at 5879.360 kb on + strand at 5879.360 kb on + strand at 5879.360 kb on + strand at 5879.361 kb on - strand at 5879.361 kb on - strand at 5879.361 kb on - strand at 5879.361 kb on - strand at 5879.367 kb on + strand at 5879.367 kb on + strand at 5879.367 kb on + strand at 5879.367 kb on + strand at 5879.368 kb on - strand at 5879.368 kb on - strand at 5879.374 kb on + strand at 5879.375 kb on - strand at 5879.616 kb on - strand, within Psyr_4959 at 5879.616 kb on - strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.777 kb on + strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.778 kb on - strand, within Psyr_4959 at 5879.864 kb on - strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.909 kb on + strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5879.910 kb on - strand, within Psyr_4959 at 5880.004 kb on + strand, within Psyr_4959 at 5880.126 kb on + strand at 5880.185 kb on - strand at 5880.421 kb on + strand, within Psyr_4960 at 5880.422 kb on - strand, within Psyr_4960 at 5880.460 kb on + strand, within Psyr_4960 at 5880.460 kb on + strand, within Psyr_4960 at 5880.460 kb on + strand, within Psyr_4960 at 5880.461 kb on - strand, within Psyr_4960 at 5880.461 kb on - strand, within Psyr_4960 at 5880.614 kb on - strand, within Psyr_4960 at 5880.619 kb on + strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.620 kb on - strand, within Psyr_4960 at 5880.852 kb on + strand, within Psyr_4960 at 5880.922 kb on + strand, within Psyr_4960 at 5880.922 kb on + strand, within Psyr_4960 at 5880.923 kb on - strand, within Psyr_4960 at 5880.923 kb on - strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960 at 5881.118 kb on - strand, within Psyr_4960
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,878,612 + Psyr_4958 0.72 -0.3 5,878,613 - Psyr_4958 0.72 -0.7 5,878,613 - Psyr_4958 0.72 -0.6 5,878,613 - Psyr_4958 0.72 +2.9 5,878,626 + Psyr_4958 0.72 -0.3 5,878,627 - Psyr_4958 0.72 +0.8 5,878,756 + Psyr_4958 0.77 +1.1 5,878,756 + Psyr_4958 0.77 -0.6 5,878,756 + Psyr_4958 0.77 +0.9 5,878,757 - Psyr_4958 0.77 +0.4 5,878,758 + Psyr_4958 0.77 +1.9 5,878,758 + Psyr_4958 0.77 -0.4 5,878,759 - Psyr_4958 0.78 -1.5 5,879,042 - Psyr_4958 0.88 -1.1 5,879,256 - +1.9 5,879,329 + -2.4 5,879,329 + -1.3 5,879,329 + +2.3 5,879,356 + -0.2 5,879,356 + -0.1 5,879,357 - -0.1 5,879,357 - -0.5 5,879,357 - +0.3 5,879,357 - -0.1 5,879,360 + +0.4 5,879,360 + -0.2 5,879,360 + +0.1 5,879,361 - -1.8 5,879,361 - -0.2 5,879,361 - +0.9 5,879,361 - -1.2 5,879,367 + +0.9 5,879,367 + -2.1 5,879,367 + +0.4 5,879,367 + +0.1 5,879,368 - -0.7 5,879,368 - -0.1 5,879,374 + +0.2 5,879,375 - -0.6 5,879,616 - Psyr_4959 0.33 -0.1 5,879,616 - Psyr_4959 0.33 +1.8 5,879,777 + Psyr_4959 0.54 -1.7 5,879,777 + Psyr_4959 0.54 -0.5 5,879,777 + Psyr_4959 0.54 -0.2 5,879,777 + Psyr_4959 0.54 -0.8 5,879,777 + Psyr_4959 0.54 -0.6 5,879,777 + Psyr_4959 0.54 -0.3 5,879,777 + Psyr_4959 0.54 -1.3 5,879,777 + Psyr_4959 0.54 -0.9 5,879,777 + Psyr_4959 0.54 -0.2 5,879,777 + Psyr_4959 0.54 -0.2 5,879,777 + Psyr_4959 0.54 +0.4 5,879,778 - Psyr_4959 0.54 -0.3 5,879,778 - Psyr_4959 0.54 +0.3 5,879,778 - Psyr_4959 0.54 +0.3 5,879,778 - Psyr_4959 0.54 +0.2 5,879,778 - Psyr_4959 0.54 -0.1 5,879,778 - Psyr_4959 0.54 -1.0 5,879,778 - Psyr_4959 0.54 -0.5 5,879,864 - Psyr_4959 0.65 -2.5 5,879,909 + Psyr_4959 0.71 +0.4 5,879,909 + Psyr_4959 0.71 -0.9 5,879,909 + Psyr_4959 0.71 -0.3 5,879,909 + Psyr_4959 0.71 -0.9 5,879,909 + Psyr_4959 0.71 -1.2 5,879,909 + Psyr_4959 0.71 -2.6 5,879,909 + Psyr_4959 0.71 -1.2 5,879,909 + Psyr_4959 0.71 -1.2 5,879,909 + Psyr_4959 0.71 -1.1 5,879,909 + Psyr_4959 0.71 +1.3 5,879,909 + Psyr_4959 0.71 -0.9 5,879,909 + Psyr_4959 0.71 -0.1 5,879,909 + Psyr_4959 0.71 -0.1 5,879,910 - Psyr_4959 0.72 -0.7 5,879,910 - Psyr_4959 0.72 -1.7 5,879,910 - Psyr_4959 0.72 +0.6 5,879,910 - Psyr_4959 0.72 -0.8 5,879,910 - Psyr_4959 0.72 +0.2 5,879,910 - Psyr_4959 0.72 -1.0 5,879,910 - Psyr_4959 0.72 +1.3 5,879,910 - Psyr_4959 0.72 -0.4 5,879,910 - Psyr_4959 0.72 +0.9 5,879,910 - Psyr_4959 0.72 +0.5 5,879,910 - Psyr_4959 0.72 +0.6 5,879,910 - Psyr_4959 0.72 -0.6 5,879,910 - Psyr_4959 0.72 +0.8 5,879,910 - Psyr_4959 0.72 -2.2 5,879,910 - Psyr_4959 0.72 -0.4 5,879,910 - Psyr_4959 0.72 -0.2 5,880,004 + Psyr_4959 0.84 -1.1 5,880,126 + -0.1 5,880,185 - +0.6 5,880,421 + Psyr_4960 0.22 -1.4 5,880,422 - Psyr_4960 0.22 -0.6 5,880,460 + Psyr_4960 0.25 +0.5 5,880,460 + Psyr_4960 0.25 -1.8 5,880,460 + Psyr_4960 0.25 -0.2 5,880,461 - Psyr_4960 0.25 -0.4 5,880,461 - Psyr_4960 0.25 -1.2 5,880,614 - Psyr_4960 0.37 +0.3 5,880,619 + Psyr_4960 0.37 +0.7 5,880,620 - Psyr_4960 0.37 -1.8 5,880,620 - Psyr_4960 0.37 -1.1 5,880,620 - Psyr_4960 0.37 +0.5 5,880,620 - Psyr_4960 0.37 +0.7 5,880,852 + Psyr_4960 0.54 +1.4 5,880,922 + Psyr_4960 0.60 -0.3 5,880,922 + Psyr_4960 0.60 -0.6 5,880,923 - Psyr_4960 0.60 +0.9 5,880,923 - Psyr_4960 0.60 -0.1 5,881,118 - Psyr_4960 0.74 +0.1 5,881,118 - Psyr_4960 0.74 -0.1 5,881,118 - Psyr_4960 0.74 -0.4 5,881,118 - Psyr_4960 0.74 -0.3
Or see this region's nucleotide sequence