Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4934 and Psyr_4935 are separated by 242 nucleotides Psyr_4935 and Psyr_4936 are separated by 80 nucleotides Psyr_4936 and Psyr_4937 are separated by 164 nucleotides
Psyr_4934: Psyr_4934 - Aminoglycoside phosphotransferase:Aminotransferase class-III, at 5,847,117 to 5,850,029
_4934
Psyr_4935: Psyr_4935 - dTDP-glucose 4,6-dehydratase, at 5,850,272 to 5,851,354
_4935
Psyr_4936: Psyr_4936 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 5,851,435 to 5,851,980
_4936
Psyr_4937: Psyr_4937 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,852,145 to 5,853,959
_4937
Position (kb) 5850
5851
5852 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.731 kb on - strand, within Psyr_4934 at 5849.731 kb on - strand, within Psyr_4934 at 5849.731 kb on - strand, within Psyr_4934 at 5849.778 kb on - strand at 5849.778 kb on - strand at 5849.863 kb on + strand at 5849.864 kb on - strand at 5849.942 kb on - strand at 5850.099 kb on - strand at 5850.099 kb on - strand at 5850.099 kb on - strand at 5850.099 kb on - strand at 5850.111 kb on + strand at 5850.111 kb on + strand at 5850.111 kb on + strand at 5850.111 kb on + strand at 5850.111 kb on + strand at 5850.112 kb on - strand at 5850.113 kb on + strand at 5850.114 kb on - strand at 5850.233 kb on + strand at 5850.234 kb on - strand at 5850.234 kb on - strand at 5850.234 kb on - strand at 5850.243 kb on + strand at 5850.244 kb on - strand at 5850.244 kb on - strand at 5850.244 kb on - strand at 5850.280 kb on - strand at 5850.333 kb on + strand at 5850.377 kb on + strand at 5850.378 kb on - strand at 5850.584 kb on + strand, within Psyr_4935 at 5850.584 kb on + strand, within Psyr_4935 at 5850.584 kb on + strand, within Psyr_4935 at 5850.584 kb on + strand, within Psyr_4935 at 5850.585 kb on - strand, within Psyr_4935 at 5850.585 kb on - strand, within Psyr_4935 at 5850.585 kb on - strand, within Psyr_4935 at 5850.661 kb on + strand, within Psyr_4935 at 5850.662 kb on - strand, within Psyr_4935 at 5850.662 kb on - strand, within Psyr_4935 at 5850.662 kb on - strand, within Psyr_4935 at 5850.680 kb on + strand, within Psyr_4935 at 5850.681 kb on - strand, within Psyr_4935 at 5850.681 kb on - strand, within Psyr_4935 at 5850.681 kb on - strand, within Psyr_4935 at 5850.728 kb on + strand, within Psyr_4935 at 5850.729 kb on - strand, within Psyr_4935 at 5850.729 kb on - strand, within Psyr_4935 at 5850.729 kb on - strand, within Psyr_4935 at 5850.746 kb on + strand, within Psyr_4935 at 5850.747 kb on - strand, within Psyr_4935 at 5850.796 kb on + strand, within Psyr_4935 at 5850.796 kb on + strand, within Psyr_4935 at 5850.796 kb on + strand, within Psyr_4935 at 5850.800 kb on + strand, within Psyr_4935 at 5850.800 kb on + strand, within Psyr_4935 at 5850.801 kb on - strand, within Psyr_4935 at 5850.801 kb on - strand, within Psyr_4935 at 5850.801 kb on - strand, within Psyr_4935 at 5850.839 kb on + strand, within Psyr_4935 at 5850.840 kb on - strand, within Psyr_4935 at 5850.950 kb on + strand, within Psyr_4935 at 5850.950 kb on + strand, within Psyr_4935 at 5850.950 kb on + strand, within Psyr_4935 at 5850.950 kb on + strand, within Psyr_4935 at 5850.951 kb on - strand, within Psyr_4935 at 5850.951 kb on - strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.064 kb on - strand, within Psyr_4935 at 5851.118 kb on + strand, within Psyr_4935 at 5851.118 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.169 kb on + strand, within Psyr_4935 at 5851.259 kb on + strand at 5851.305 kb on - strand at 5851.336 kb on + strand at 5851.410 kb on + strand at 5851.410 kb on + strand at 5851.410 kb on + strand at 5851.411 kb on - strand at 5851.411 kb on - strand at 5852.042 kb on - strand at 5852.042 kb on - strand at 5852.044 kb on + strand at 5852.044 kb on + strand at 5852.044 kb on + strand at 5852.045 kb on - strand at 5852.253 kb on + strand at 5852.254 kb on - strand at 5852.301 kb on + strand at 5852.301 kb on + strand at 5852.301 kb on + strand at 5852.301 kb on + strand at 5852.302 kb on - strand at 5852.302 kb on - strand at 5852.302 kb on - strand at 5852.302 kb on - strand at 5852.302 kb on - strand at 5852.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,849,730 + Psyr_4934 0.90 +1.5 5,849,730 + Psyr_4934 0.90 +0.6 5,849,730 + Psyr_4934 0.90 -0.9 5,849,730 + Psyr_4934 0.90 -1.1 5,849,730 + Psyr_4934 0.90 -0.6 5,849,730 + Psyr_4934 0.90 -1.2 5,849,730 + Psyr_4934 0.90 -0.6 5,849,731 - Psyr_4934 0.90 +0.1 5,849,731 - Psyr_4934 0.90 +0.5 5,849,731 - Psyr_4934 0.90 +0.2 5,849,778 - +0.2 5,849,778 - +0.1 5,849,863 + -0.3 5,849,864 - -0.3 5,849,942 - -1.6 5,850,099 - -0.6 5,850,099 - +0.4 5,850,099 - +2.1 5,850,099 - -1.1 5,850,111 + -0.6 5,850,111 + -0.4 5,850,111 + -1.6 5,850,111 + -1.0 5,850,111 + -2.1 5,850,112 - -1.5 5,850,113 + +0.3 5,850,114 - +0.2 5,850,233 + +0.7 5,850,234 - +0.4 5,850,234 - -0.6 5,850,234 - +0.1 5,850,243 + +0.1 5,850,244 - -0.7 5,850,244 - -0.6 5,850,244 - -1.1 5,850,280 - -0.3 5,850,333 + +0.1 5,850,377 + -0.6 5,850,378 - -0.1 5,850,584 + Psyr_4935 0.29 +1.9 5,850,584 + Psyr_4935 0.29 -0.6 5,850,584 + Psyr_4935 0.29 -0.3 5,850,584 + Psyr_4935 0.29 +0.0 5,850,585 - Psyr_4935 0.29 +0.2 5,850,585 - Psyr_4935 0.29 -0.6 5,850,585 - Psyr_4935 0.29 +0.3 5,850,661 + Psyr_4935 0.36 +0.7 5,850,662 - Psyr_4935 0.36 +0.1 5,850,662 - Psyr_4935 0.36 -0.4 5,850,662 - Psyr_4935 0.36 +1.2 5,850,680 + Psyr_4935 0.38 -1.3 5,850,681 - Psyr_4935 0.38 -0.9 5,850,681 - Psyr_4935 0.38 -0.8 5,850,681 - Psyr_4935 0.38 -0.1 5,850,728 + Psyr_4935 0.42 -0.1 5,850,729 - Psyr_4935 0.42 -0.6 5,850,729 - Psyr_4935 0.42 -0.3 5,850,729 - Psyr_4935 0.42 -1.1 5,850,746 + Psyr_4935 0.44 -1.1 5,850,747 - Psyr_4935 0.44 -0.3 5,850,796 + Psyr_4935 0.48 -0.3 5,850,796 + Psyr_4935 0.48 -0.2 5,850,796 + Psyr_4935 0.48 -0.3 5,850,800 + Psyr_4935 0.49 -0.3 5,850,800 + Psyr_4935 0.49 -0.4 5,850,801 - Psyr_4935 0.49 +0.9 5,850,801 - Psyr_4935 0.49 -0.0 5,850,801 - Psyr_4935 0.49 -0.3 5,850,839 + Psyr_4935 0.52 +0.3 5,850,840 - Psyr_4935 0.52 -1.0 5,850,950 + Psyr_4935 0.63 +0.6 5,850,950 + Psyr_4935 0.63 -0.1 5,850,950 + Psyr_4935 0.63 -0.1 5,850,950 + Psyr_4935 0.63 +1.7 5,850,951 - Psyr_4935 0.63 -0.3 5,850,951 - Psyr_4935 0.63 -0.1 5,851,013 + Psyr_4935 0.68 +0.2 5,851,013 + Psyr_4935 0.68 +0.9 5,851,013 + Psyr_4935 0.68 +0.2 5,851,013 + Psyr_4935 0.68 +0.5 5,851,013 + Psyr_4935 0.68 +0.5 5,851,013 + Psyr_4935 0.68 -0.1 5,851,013 + Psyr_4935 0.68 -0.1 5,851,014 - Psyr_4935 0.69 -0.7 5,851,014 - Psyr_4935 0.69 -0.7 5,851,014 - Psyr_4935 0.69 -1.5 5,851,014 - Psyr_4935 0.69 -0.1 5,851,014 - Psyr_4935 0.69 -1.2 5,851,064 - Psyr_4935 0.73 -0.2 5,851,118 + Psyr_4935 0.78 +1.1 5,851,118 + Psyr_4935 0.78 -0.3 5,851,136 + Psyr_4935 0.80 +0.9 5,851,136 + Psyr_4935 0.80 -0.8 5,851,136 + Psyr_4935 0.80 +0.2 5,851,136 + Psyr_4935 0.80 +0.4 5,851,136 + Psyr_4935 0.80 +0.9 5,851,136 + Psyr_4935 0.80 -0.6 5,851,137 - Psyr_4935 0.80 -1.2 5,851,137 - Psyr_4935 0.80 +0.4 5,851,137 - Psyr_4935 0.80 -0.1 5,851,137 - Psyr_4935 0.80 -1.4 5,851,137 - Psyr_4935 0.80 -0.4 5,851,137 - Psyr_4935 0.80 -1.2 5,851,169 + Psyr_4935 0.83 -0.6 5,851,259 + +1.6 5,851,305 - -0.4 5,851,336 + +0.5 5,851,410 + +1.7 5,851,410 + -0.6 5,851,410 + -1.3 5,851,411 - -1.1 5,851,411 - -0.6 5,852,042 - +0.7 5,852,042 - -0.7 5,852,044 + +1.1 5,852,044 + -0.0 5,852,044 + +1.0 5,852,045 - -0.8 5,852,253 + -1.3 5,852,254 - -0.2 5,852,301 + -0.6 5,852,301 + -1.2 5,852,301 + -0.9 5,852,301 + +1.0 5,852,302 - -1.2 5,852,302 - +0.3 5,852,302 - +0.3 5,852,302 - +0.7 5,852,302 - +0.6 5,852,302 - -0.9
Or see this region's nucleotide sequence