Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4930 and Psyr_4931 are separated by 222 nucleotides Psyr_4931 and Psyr_4932 are separated by 218 nucleotides Psyr_4932 and Psyr_4933 are separated by 5 nucleotides
Psyr_4930: Psyr_4930 - outer membrane porin, at 5,842,863 to 5,844,137
_4930
Psyr_4931: Psyr_4931 - conserved hypothetical protein, at 5,844,360 to 5,844,566
_4931
Psyr_4932: Psyr_4932 - agmatine deiminase, at 5,844,785 to 5,845,891
_4932
Psyr_4933: Psyr_4933 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 5,845,897 to 5,846,775
_4933
Position (kb) 5844
5845
5846 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5843.882 kb on - strand, within Psyr_4930 at 5844.007 kb on + strand, within Psyr_4930 at 5844.007 kb on + strand, within Psyr_4930 at 5844.007 kb on + strand, within Psyr_4930 at 5844.007 kb on + strand, within Psyr_4930 at 5844.007 kb on + strand, within Psyr_4930 at 5844.007 kb on + strand, within Psyr_4930 at 5844.007 kb on + strand, within Psyr_4930 at 5844.007 kb on + strand, within Psyr_4930 at 5844.008 kb on - strand, within Psyr_4930 at 5844.008 kb on - strand, within Psyr_4930 at 5844.008 kb on - strand, within Psyr_4930 at 5844.008 kb on - strand, within Psyr_4930 at 5844.008 kb on - strand, within Psyr_4930 at 5844.122 kb on + strand at 5844.123 kb on - strand at 5844.132 kb on - strand at 5844.250 kb on + strand at 5844.250 kb on + strand at 5844.251 kb on - strand at 5844.261 kb on + strand at 5844.261 kb on + strand at 5844.261 kb on + strand at 5844.261 kb on + strand at 5844.261 kb on + strand at 5844.262 kb on - strand at 5844.262 kb on - strand at 5844.262 kb on - strand at 5844.262 kb on - strand at 5844.262 kb on - strand at 5844.262 kb on - strand at 5844.262 kb on - strand at 5844.354 kb on + strand at 5844.354 kb on + strand at 5844.354 kb on + strand at 5844.355 kb on - strand at 5844.554 kb on + strand at 5844.555 kb on - strand at 5844.555 kb on - strand at 5844.595 kb on + strand at 5844.602 kb on - strand at 5844.602 kb on - strand at 5844.602 kb on - strand at 5844.626 kb on + strand at 5844.656 kb on - strand at 5844.684 kb on + strand at 5844.685 kb on - strand at 5844.728 kb on + strand at 5844.729 kb on - strand at 5844.731 kb on + strand at 5844.732 kb on - strand at 5844.732 kb on - strand at 5844.732 kb on - strand at 5844.762 kb on + strand at 5844.763 kb on - strand at 5844.766 kb on + strand at 5844.773 kb on - strand at 5844.773 kb on - strand at 5844.773 kb on - strand at 5844.773 kb on - strand at 5844.773 kb on - strand at 5844.777 kb on - strand at 5844.779 kb on + strand at 5844.786 kb on + strand at 5844.786 kb on + strand at 5844.842 kb on + strand at 5844.842 kb on + strand at 5844.842 kb on + strand at 5844.843 kb on - strand at 5844.843 kb on - strand at 5844.843 kb on - strand at 5844.843 kb on - strand at 5844.843 kb on - strand at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5845.090 kb on + strand, within Psyr_4932 at 5845.100 kb on - strand, within Psyr_4932 at 5845.139 kb on - strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.199 kb on + strand, within Psyr_4932 at 5845.200 kb on - strand, within Psyr_4932 at 5845.221 kb on + strand, within Psyr_4932 at 5845.221 kb on + strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.449 kb on + strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.475 kb on + strand, within Psyr_4932 at 5845.476 kb on - strand, within Psyr_4932 at 5845.515 kb on + strand, within Psyr_4932 at 5845.515 kb on + strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.686 kb on + strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.105 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.155 kb on - strand, within Psyr_4933 at 5846.340 kb on - strand, within Psyr_4933 at 5846.384 kb on + strand, within Psyr_4933 at 5846.385 kb on - strand, within Psyr_4933 at 5846.385 kb on - strand, within Psyr_4933 at 5846.387 kb on + strand, within Psyr_4933 at 5846.432 kb on + strand, within Psyr_4933 at 5846.433 kb on + strand, within Psyr_4933 at 5846.433 kb on - strand, within Psyr_4933 at 5846.433 kb on - strand, within Psyr_4933 at 5846.600 kb on + strand, within Psyr_4933 at 5846.628 kb on - strand, within Psyr_4933 at 5846.689 kb on + strand at 5846.690 kb on - strand at 5846.690 kb on - strand at 5846.690 kb on - strand at 5846.781 kb on + strand at 5846.781 kb on + strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.816 kb on + strand at 5846.816 kb on + strand at 5846.817 kb on - strand at 5846.817 kb on - strand at 5846.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,843,882 - Psyr_4930 0.80 -1.4 5,844,007 + Psyr_4930 0.90 -0.9 5,844,007 + Psyr_4930 0.90 -0.3 5,844,007 + Psyr_4930 0.90 +0.6 5,844,007 + Psyr_4930 0.90 -1.3 5,844,007 + Psyr_4930 0.90 +0.7 5,844,007 + Psyr_4930 0.90 -0.2 5,844,007 + Psyr_4930 0.90 -0.1 5,844,007 + Psyr_4930 0.90 -0.5 5,844,008 - Psyr_4930 0.90 -0.3 5,844,008 - Psyr_4930 0.90 +1.1 5,844,008 - Psyr_4930 0.90 -0.4 5,844,008 - Psyr_4930 0.90 -0.9 5,844,008 - Psyr_4930 0.90 -1.1 5,844,122 + -1.1 5,844,123 - -1.4 5,844,132 - -0.9 5,844,250 + +0.6 5,844,250 + +0.8 5,844,251 - +0.6 5,844,261 + -1.6 5,844,261 + -0.2 5,844,261 + -0.4 5,844,261 + +0.4 5,844,261 + +1.2 5,844,262 - -0.9 5,844,262 - +1.3 5,844,262 - +0.1 5,844,262 - -0.9 5,844,262 - -0.4 5,844,262 - -0.1 5,844,262 - +1.5 5,844,354 + +0.2 5,844,354 + +1.8 5,844,354 + -1.1 5,844,355 - -1.6 5,844,554 + -1.2 5,844,555 - +0.3 5,844,555 - -0.7 5,844,595 + -1.5 5,844,602 - +0.2 5,844,602 - -0.5 5,844,602 - +0.0 5,844,626 + -1.9 5,844,656 - +0.9 5,844,684 + +0.2 5,844,685 - +0.6 5,844,728 + -0.2 5,844,729 - -1.6 5,844,731 + +0.2 5,844,732 - +0.5 5,844,732 - +0.4 5,844,732 - -1.1 5,844,762 + +0.4 5,844,763 - -1.5 5,844,766 + +1.1 5,844,773 - -2.5 5,844,773 - -0.3 5,844,773 - -1.9 5,844,773 - +0.8 5,844,773 - -0.4 5,844,777 - +0.5 5,844,779 + +0.6 5,844,786 + +1.2 5,844,786 + -0.3 5,844,842 + -0.6 5,844,842 + -1.6 5,844,842 + -1.1 5,844,843 - -1.4 5,844,843 - -0.1 5,844,843 - +0.3 5,844,843 - -2.1 5,844,843 - -1.4 5,844,981 + Psyr_4932 0.18 -2.4 5,844,981 + Psyr_4932 0.18 +0.4 5,844,981 + Psyr_4932 0.18 -0.4 5,844,981 + Psyr_4932 0.18 +0.7 5,844,981 + Psyr_4932 0.18 -1.3 5,844,981 + Psyr_4932 0.18 -0.6 5,844,982 - Psyr_4932 0.18 -0.2 5,844,982 - Psyr_4932 0.18 +1.7 5,844,982 - Psyr_4932 0.18 -1.0 5,844,982 - Psyr_4932 0.18 -1.5 5,844,982 - Psyr_4932 0.18 -0.0 5,844,982 - Psyr_4932 0.18 -1.6 5,844,982 - Psyr_4932 0.18 -1.4 5,845,090 + Psyr_4932 0.28 -3.0 5,845,100 - Psyr_4932 0.28 -1.4 5,845,139 - Psyr_4932 0.32 +0.9 5,845,164 + Psyr_4932 0.34 -2.1 5,845,164 + Psyr_4932 0.34 +0.3 5,845,164 + Psyr_4932 0.34 -2.1 5,845,165 - Psyr_4932 0.34 -0.4 5,845,165 - Psyr_4932 0.34 -0.3 5,845,165 - Psyr_4932 0.34 -0.4 5,845,165 - Psyr_4932 0.34 -2.2 5,845,199 + Psyr_4932 0.37 -1.5 5,845,200 - Psyr_4932 0.37 -1.9 5,845,221 + Psyr_4932 0.39 +0.7 5,845,221 + Psyr_4932 0.39 -0.1 5,845,222 - Psyr_4932 0.39 -2.5 5,845,222 - Psyr_4932 0.39 -3.4 5,845,222 - Psyr_4932 0.39 -0.4 5,845,222 - Psyr_4932 0.39 +0.4 5,845,449 + Psyr_4932 0.60 +0.2 5,845,450 - Psyr_4932 0.60 +0.3 5,845,450 - Psyr_4932 0.60 -0.3 5,845,450 - Psyr_4932 0.60 +0.9 5,845,475 + Psyr_4932 0.62 +0.2 5,845,476 - Psyr_4932 0.62 -0.6 5,845,515 + Psyr_4932 0.66 -2.6 5,845,515 + Psyr_4932 0.66 -0.6 5,845,516 - Psyr_4932 0.66 -0.1 5,845,516 - Psyr_4932 0.66 -0.5 5,845,516 - Psyr_4932 0.66 -1.8 5,845,686 + Psyr_4932 0.81 -1.0 5,845,687 - Psyr_4932 0.81 -0.6 5,845,687 - Psyr_4932 0.81 -2.5 5,845,687 - Psyr_4932 0.81 -0.3 5,845,687 - Psyr_4932 0.81 -0.3 5,846,090 + Psyr_4933 0.22 +2.5 5,846,090 + Psyr_4933 0.22 -0.8 5,846,090 + Psyr_4933 0.22 -0.9 5,846,090 + Psyr_4933 0.22 -1.3 5,846,091 - Psyr_4933 0.22 -0.1 5,846,091 - Psyr_4933 0.22 +0.2 5,846,091 - Psyr_4933 0.22 -0.6 5,846,105 + Psyr_4933 0.24 -1.1 5,846,154 + Psyr_4933 0.29 +0.9 5,846,154 + Psyr_4933 0.29 -1.5 5,846,154 + Psyr_4933 0.29 -0.6 5,846,155 - Psyr_4933 0.29 +0.3 5,846,340 - Psyr_4933 0.50 -0.1 5,846,384 + Psyr_4933 0.55 -2.5 5,846,385 - Psyr_4933 0.56 +0.9 5,846,385 - Psyr_4933 0.56 -1.1 5,846,387 + Psyr_4933 0.56 -0.5 5,846,432 + Psyr_4933 0.61 -1.6 5,846,433 + Psyr_4933 0.61 -1.2 5,846,433 - Psyr_4933 0.61 +0.1 5,846,433 - Psyr_4933 0.61 +0.5 5,846,600 + Psyr_4933 0.80 +0.5 5,846,628 - Psyr_4933 0.83 -0.1 5,846,689 + -0.8 5,846,690 - +0.7 5,846,690 - -0.9 5,846,690 - -1.1 5,846,781 + +0.4 5,846,781 + -0.2 5,846,809 - +0.2 5,846,809 - +3.3 5,846,809 - +0.3 5,846,809 - +0.3 5,846,816 + -1.5 5,846,816 + -1.9 5,846,817 - -2.1 5,846,817 - -0.1 5,846,861 - +0.0
Or see this region's nucleotide sequence