Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4818 and Psyr_4819 are separated by 32 nucleotides Psyr_4819 and Psyr_4820 overlap by 4 nucleotides Psyr_4820 and Psyr_4821 are separated by 282 nucleotides
Psyr_4818: Psyr_4818 - chorismate mutase, at 5,715,688 to 5,716,245
_4818
Psyr_4819: Psyr_4819 - conserved hypothetical protein, at 5,716,278 to 5,716,859
_4819
Psyr_4820: Psyr_4820 - conserved hypothetical protein, at 5,716,856 to 5,717,488
_4820
Psyr_4821: Psyr_4821 - PAS/PAC sensor signal transduction histidine kinase, at 5,717,771 to 5,718,856
_4821
Position (kb) 5716
5717
5718 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5715.976 kb on - strand, within Psyr_4818 at 5716.284 kb on + strand at 5716.284 kb on + strand at 5716.284 kb on + strand at 5716.284 kb on + strand at 5716.284 kb on + strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.389 kb on + strand, within Psyr_4819 at 5716.389 kb on + strand, within Psyr_4819 at 5716.389 kb on + strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.566 kb on + strand, within Psyr_4819 at 5716.705 kb on - strand, within Psyr_4819 at 5716.831 kb on + strand at 5716.831 kb on + strand at 5716.840 kb on + strand at 5716.841 kb on - strand at 5716.931 kb on + strand, within Psyr_4820 at 5716.932 kb on - strand, within Psyr_4820 at 5716.932 kb on - strand, within Psyr_4820 at 5716.932 kb on - strand, within Psyr_4820 at 5716.932 kb on - strand, within Psyr_4820 at 5716.932 kb on - strand, within Psyr_4820 at 5716.932 kb on - strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.937 kb on + strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5716.938 kb on - strand, within Psyr_4820 at 5717.076 kb on + strand, within Psyr_4820 at 5717.076 kb on + strand, within Psyr_4820 at 5717.077 kb on - strand, within Psyr_4820 at 5717.132 kb on - strand, within Psyr_4820 at 5717.417 kb on + strand, within Psyr_4820 at 5717.418 kb on - strand, within Psyr_4820 at 5717.418 kb on - strand, within Psyr_4820 at 5717.418 kb on - strand, within Psyr_4820 at 5717.544 kb on + strand at 5717.544 kb on + strand at 5717.587 kb on - strand at 5717.587 kb on - strand at 5717.626 kb on + strand at 5717.627 kb on - strand at 5717.686 kb on - strand at 5717.686 kb on - strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.858 kb on + strand at 5717.859 kb on - strand at 5717.859 kb on - strand at 5717.859 kb on - strand at 5717.859 kb on - strand at 5717.859 kb on - strand at 5717.995 kb on + strand, within Psyr_4821 at 5717.995 kb on + strand, within Psyr_4821 at 5718.065 kb on - strand, within Psyr_4821 at 5718.071 kb on - strand, within Psyr_4821 at 5718.278 kb on + strand, within Psyr_4821 at 5718.279 kb on - strand, within Psyr_4821 at 5718.279 kb on - strand, within Psyr_4821 at 5718.317 kb on - strand, within Psyr_4821 at 5718.433 kb on + strand, within Psyr_4821 at 5718.433 kb on + strand, within Psyr_4821 at 5718.433 kb on + strand, within Psyr_4821 at 5718.433 kb on + strand, within Psyr_4821 at 5718.434 kb on - strand, within Psyr_4821 at 5718.449 kb on + strand, within Psyr_4821 at 5718.450 kb on - strand, within Psyr_4821
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,715,976 - Psyr_4818 0.52 +0.6 5,716,284 + +0.5 5,716,284 + +0.1 5,716,284 + +1.3 5,716,284 + +1.7 5,716,284 + -0.4 5,716,285 - -0.5 5,716,285 - +0.6 5,716,285 - +1.6 5,716,285 - -0.6 5,716,285 - -0.1 5,716,285 - +1.4 5,716,285 - -1.0 5,716,285 - +0.6 5,716,285 - -0.9 5,716,285 - +0.2 5,716,285 - -0.4 5,716,383 + Psyr_4819 0.18 -3.4 5,716,383 + Psyr_4819 0.18 +0.2 5,716,383 + Psyr_4819 0.18 +2.1 5,716,383 + Psyr_4819 0.18 -0.0 5,716,383 + Psyr_4819 0.18 +1.0 5,716,383 + Psyr_4819 0.18 -0.7 5,716,383 + Psyr_4819 0.18 +0.4 5,716,383 + Psyr_4819 0.18 +0.1 5,716,383 + Psyr_4819 0.18 +0.1 5,716,383 + Psyr_4819 0.18 +0.6 5,716,384 - Psyr_4819 0.18 -0.3 5,716,384 - Psyr_4819 0.18 -0.3 5,716,384 - Psyr_4819 0.18 -0.0 5,716,384 - Psyr_4819 0.18 +0.3 5,716,384 - Psyr_4819 0.18 -1.6 5,716,384 - Psyr_4819 0.18 -1.2 5,716,384 - Psyr_4819 0.18 -2.0 5,716,384 - Psyr_4819 0.18 -0.3 5,716,384 - Psyr_4819 0.18 +1.4 5,716,384 - Psyr_4819 0.18 -1.6 5,716,384 - Psyr_4819 0.18 -1.6 5,716,384 - Psyr_4819 0.18 -1.9 5,716,384 - Psyr_4819 0.18 +1.0 5,716,384 - Psyr_4819 0.18 +0.1 5,716,384 - Psyr_4819 0.18 -0.4 5,716,384 - Psyr_4819 0.18 +0.1 5,716,385 + Psyr_4819 0.18 -0.2 5,716,385 + Psyr_4819 0.18 -0.5 5,716,385 + Psyr_4819 0.18 +1.3 5,716,385 + Psyr_4819 0.18 -0.6 5,716,385 + Psyr_4819 0.18 -0.4 5,716,386 - Psyr_4819 0.19 +0.1 5,716,386 - Psyr_4819 0.19 +1.0 5,716,386 - Psyr_4819 0.19 -1.1 5,716,386 - Psyr_4819 0.19 -0.4 5,716,386 - Psyr_4819 0.19 -0.9 5,716,386 - Psyr_4819 0.19 -0.6 5,716,389 + Psyr_4819 0.19 -0.4 5,716,389 + Psyr_4819 0.19 -1.4 5,716,389 + Psyr_4819 0.19 -0.9 5,716,390 - Psyr_4819 0.19 -0.0 5,716,390 - Psyr_4819 0.19 +0.5 5,716,566 + Psyr_4819 0.49 +0.3 5,716,705 - Psyr_4819 0.73 +1.4 5,716,831 + -0.4 5,716,831 + -0.1 5,716,840 + +1.0 5,716,841 - -0.9 5,716,931 + Psyr_4820 0.12 -0.2 5,716,932 - Psyr_4820 0.12 -0.1 5,716,932 - Psyr_4820 0.12 +1.0 5,716,932 - Psyr_4820 0.12 +0.3 5,716,932 - Psyr_4820 0.12 +0.7 5,716,932 - Psyr_4820 0.12 -0.5 5,716,932 - Psyr_4820 0.12 +0.8 5,716,937 + Psyr_4820 0.13 -0.9 5,716,937 + Psyr_4820 0.13 +1.0 5,716,937 + Psyr_4820 0.13 +0.7 5,716,937 + Psyr_4820 0.13 +0.5 5,716,937 + Psyr_4820 0.13 -0.8 5,716,937 + Psyr_4820 0.13 +0.2 5,716,937 + Psyr_4820 0.13 +1.2 5,716,937 + Psyr_4820 0.13 +0.4 5,716,937 + Psyr_4820 0.13 +0.1 5,716,937 + Psyr_4820 0.13 -0.4 5,716,937 + Psyr_4820 0.13 +1.3 5,716,937 + Psyr_4820 0.13 +0.8 5,716,937 + Psyr_4820 0.13 +0.9 5,716,937 + Psyr_4820 0.13 +0.6 5,716,937 + Psyr_4820 0.13 +0.3 5,716,937 + Psyr_4820 0.13 +0.8 5,716,938 - Psyr_4820 0.13 +0.7 5,716,938 - Psyr_4820 0.13 +0.1 5,716,938 - Psyr_4820 0.13 -0.8 5,716,938 - Psyr_4820 0.13 +0.5 5,716,938 - Psyr_4820 0.13 +0.2 5,716,938 - Psyr_4820 0.13 +1.1 5,716,938 - Psyr_4820 0.13 -0.0 5,716,938 - Psyr_4820 0.13 -0.6 5,716,938 - Psyr_4820 0.13 +0.7 5,716,938 - Psyr_4820 0.13 -0.6 5,716,938 - Psyr_4820 0.13 +0.3 5,716,938 - Psyr_4820 0.13 -0.7 5,716,938 - Psyr_4820 0.13 -0.7 5,716,938 - Psyr_4820 0.13 +1.0 5,716,938 - Psyr_4820 0.13 -0.0 5,716,938 - Psyr_4820 0.13 -1.6 5,716,938 - Psyr_4820 0.13 +1.3 5,716,938 - Psyr_4820 0.13 +0.2 5,716,938 - Psyr_4820 0.13 -1.0 5,716,938 - Psyr_4820 0.13 -0.3 5,717,076 + Psyr_4820 0.35 +0.6 5,717,076 + Psyr_4820 0.35 +0.3 5,717,077 - Psyr_4820 0.35 -0.0 5,717,132 - Psyr_4820 0.44 +0.6 5,717,417 + Psyr_4820 0.89 +0.5 5,717,418 - Psyr_4820 0.89 +0.5 5,717,418 - Psyr_4820 0.89 -0.7 5,717,418 - Psyr_4820 0.89 -1.0 5,717,544 + -0.0 5,717,544 + +0.7 5,717,587 - -0.6 5,717,587 - +0.3 5,717,626 + +1.5 5,717,627 - -0.8 5,717,686 - -1.6 5,717,686 - -0.7 5,717,858 + -1.4 5,717,858 + -0.2 5,717,858 + -0.0 5,717,858 + -0.3 5,717,858 + -0.6 5,717,858 + -0.5 5,717,859 - -0.3 5,717,859 - -0.1 5,717,859 - +0.1 5,717,859 - -0.6 5,717,859 - +0.8 5,717,995 + Psyr_4821 0.21 +2.0 5,717,995 + Psyr_4821 0.21 +0.7 5,718,065 - Psyr_4821 0.27 -1.6 5,718,071 - Psyr_4821 0.28 +0.1 5,718,278 + Psyr_4821 0.47 -1.4 5,718,279 - Psyr_4821 0.47 -0.4 5,718,279 - Psyr_4821 0.47 -0.3 5,718,317 - Psyr_4821 0.50 -1.2 5,718,433 + Psyr_4821 0.61 -0.2 5,718,433 + Psyr_4821 0.61 +0.2 5,718,433 + Psyr_4821 0.61 -0.8 5,718,433 + Psyr_4821 0.61 +0.1 5,718,434 - Psyr_4821 0.61 -0.7 5,718,449 + Psyr_4821 0.62 -1.2 5,718,450 - Psyr_4821 0.63 -0.2
Or see this region's nucleotide sequence