Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4444

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4442 and Psyr_4443 are separated by 188 nucleotidesPsyr_4443 and Psyr_4444 are separated by 152 nucleotidesPsyr_4444 and Psyr_4445 overlap by 4 nucleotidesPsyr_4445 and Psyr_4446 are separated by 308 nucleotides Psyr_4442: Psyr_4442 - membrane protein, putative, at 5,309,463 to 5,310,473 _4442 Psyr_4443: Psyr_4443 - hypothetical protein, at 5,310,662 to 5,310,952 _4443 Psyr_4444: Psyr_4444 - Protein of unknown function DUF6, at 5,311,105 to 5,311,986 _4444 Psyr_4445: Psyr_4445 - conserved hypothetical protein, at 5,311,983 to 5,312,216 _4445 Psyr_4446: Psyr_4446 - SmpA/OmlA, at 5,312,525 to 5,312,863 _4446 Position (kb) 5311 5312Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5310.121 kb on + strand, within Psyr_4442at 5310.121 kb on + strand, within Psyr_4442at 5310.121 kb on + strand, within Psyr_4442at 5310.121 kb on + strand, within Psyr_4442at 5310.121 kb on + strand, within Psyr_4442at 5310.388 kb on - strandat 5310.388 kb on - strandat 5310.408 kb on + strandat 5310.424 kb on - strandat 5310.424 kb on - strandat 5310.424 kb on - strandat 5310.441 kb on + strandat 5310.442 kb on - strandat 5310.442 kb on - strandat 5310.444 kb on + strandat 5310.445 kb on - strandat 5310.445 kb on - strandat 5310.473 kb on + strandat 5310.474 kb on - strandat 5310.616 kb on - strandat 5310.920 kb on + strand, within Psyr_4443at 5311.005 kb on + strandat 5311.006 kb on - strandat 5311.006 kb on - strandat 5311.073 kb on + strandat 5311.073 kb on + strandat 5311.074 kb on - strandat 5311.074 kb on - strandat 5311.074 kb on - strandat 5311.078 kb on - strandat 5311.078 kb on - strandat 5311.078 kb on - strandat 5311.078 kb on - strandat 5311.078 kb on - strandat 5311.090 kb on - strandat 5311.111 kb on + strandat 5311.112 kb on - strandat 5311.112 kb on - strandat 5311.112 kb on - strandat 5311.137 kb on + strandat 5311.199 kb on + strand, within Psyr_4444at 5311.207 kb on + strand, within Psyr_4444at 5311.207 kb on + strand, within Psyr_4444at 5311.207 kb on + strand, within Psyr_4444at 5311.208 kb on - strand, within Psyr_4444at 5311.334 kb on - strand, within Psyr_4444at 5311.348 kb on + strand, within Psyr_4444at 5311.348 kb on + strand, within Psyr_4444at 5311.349 kb on - strand, within Psyr_4444at 5311.349 kb on - strand, within Psyr_4444at 5311.349 kb on - strand, within Psyr_4444at 5311.589 kb on - strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.600 kb on - strand, within Psyr_4444at 5311.600 kb on - strand, within Psyr_4444at 5311.651 kb on + strand, within Psyr_4444at 5311.651 kb on + strand, within Psyr_4444at 5311.651 kb on + strand, within Psyr_4444at 5311.651 kb on + strand, within Psyr_4444at 5311.652 kb on - strand, within Psyr_4444at 5311.656 kb on - strand, within Psyr_4444at 5311.656 kb on - strand, within Psyr_4444at 5311.747 kb on + strand, within Psyr_4444at 5311.747 kb on + strand, within Psyr_4444at 5311.747 kb on + strand, within Psyr_4444at 5311.747 kb on + strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.901 kb on - strandat 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.132 kb on + strand, within Psyr_4445at 5312.160 kb on + strand, within Psyr_4445at 5312.160 kb on + strand, within Psyr_4445at 5312.161 kb on - strand, within Psyr_4445at 5312.186 kb on - strand, within Psyr_4445at 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.198 kb on - strandat 5312.198 kb on - strandat 5312.198 kb on - strandat 5312.260 kb on + strandat 5312.261 kb on - strandat 5312.261 kb on - strandat 5312.261 kb on - strandat 5312.355 kb on - strandat 5312.428 kb on + strandat 5312.528 kb on + strandat 5312.528 kb on + strandat 5312.528 kb on + strandat 5312.529 kb on - strandat 5312.529 kb on - strandat 5312.557 kb on - strandat 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.610 kb on - strand, within Psyr_4446at 5312.610 kb on - strand, within Psyr_4446at 5312.618 kb on + strand, within Psyr_4446at 5312.618 kb on + strand, within Psyr_4446at 5312.619 kb on - strand, within Psyr_4446at 5312.619 kb on - strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.862 kb on - strandat 5312.862 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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5,310,121 + Psyr_4442 0.65 +0.1
5,310,121 + Psyr_4442 0.65 -0.9
5,310,121 + Psyr_4442 0.65 -0.2
5,310,121 + Psyr_4442 0.65 +0.5
5,310,121 + Psyr_4442 0.65 -0.0
5,310,388 - +0.4
5,310,388 - -1.1
5,310,408 + -0.5
5,310,424 - -0.7
5,310,424 - -0.4
5,310,424 - -0.9
5,310,441 + -0.8
5,310,442 - -0.4
5,310,442 - +1.6
5,310,444 + -1.1
5,310,445 - -1.1
5,310,445 - +0.8
5,310,473 + -0.2
5,310,474 - -0.2
5,310,616 - +0.2
5,310,920 + Psyr_4443 0.89 -0.8
5,311,005 + +1.0
5,311,006 - -0.5
5,311,006 - -0.1
5,311,073 + -0.2
5,311,073 + -0.8
5,311,074 - -1.0
5,311,074 - -0.3
5,311,074 - -2.2
5,311,078 - -0.4
5,311,078 - +0.6
5,311,078 - -0.3
5,311,078 - +0.4
5,311,078 - -1.0
5,311,090 - +1.0
5,311,111 + +0.3
5,311,112 - -0.1
5,311,112 - +0.8
5,311,112 - +1.6
5,311,137 + -0.2
5,311,199 + Psyr_4444 0.11 +2.4
5,311,207 + Psyr_4444 0.12 +1.4
5,311,207 + Psyr_4444 0.12 +0.2
5,311,207 + Psyr_4444 0.12 +2.0
5,311,208 - Psyr_4444 0.12 +0.1
5,311,334 - Psyr_4444 0.26 +1.0
5,311,348 + Psyr_4444 0.28 +1.8
5,311,348 + Psyr_4444 0.28 -0.9
5,311,349 - Psyr_4444 0.28 +1.0
5,311,349 - Psyr_4444 0.28 -0.0
5,311,349 - Psyr_4444 0.28 -1.0
5,311,589 - Psyr_4444 0.55 +0.6
5,311,597 + Psyr_4444 0.56 -0.1
5,311,597 + Psyr_4444 0.56 +0.1
5,311,597 + Psyr_4444 0.56 +0.4
5,311,597 + Psyr_4444 0.56 -0.6
5,311,597 + Psyr_4444 0.56 +0.7
5,311,598 - Psyr_4444 0.56 +0.7
5,311,598 - Psyr_4444 0.56 -0.3
5,311,598 - Psyr_4444 0.56 -2.0
5,311,598 - Psyr_4444 0.56 +1.4
5,311,598 - Psyr_4444 0.56 +2.2
5,311,598 - Psyr_4444 0.56 +0.7
5,311,600 - Psyr_4444 0.56 +0.4
5,311,600 - Psyr_4444 0.56 -0.1
5,311,651 + Psyr_4444 0.62 -0.6
5,311,651 + Psyr_4444 0.62 -1.2
5,311,651 + Psyr_4444 0.62 +0.6
5,311,651 + Psyr_4444 0.62 -1.3
5,311,652 - Psyr_4444 0.62 -1.8
5,311,656 - Psyr_4444 0.62 +0.1
5,311,656 - Psyr_4444 0.62 +1.1
5,311,747 + Psyr_4444 0.73 +0.2
5,311,747 + Psyr_4444 0.73 +0.5
5,311,747 + Psyr_4444 0.73 +0.4
5,311,747 + Psyr_4444 0.73 +0.3
5,311,748 - Psyr_4444 0.73 -0.6
5,311,748 - Psyr_4444 0.73 +0.1
5,311,748 - Psyr_4444 0.73 +1.4
5,311,748 - Psyr_4444 0.73 +0.5
5,311,748 - Psyr_4444 0.73 +1.0
5,311,748 - Psyr_4444 0.73 +0.2
5,311,748 - Psyr_4444 0.73 +1.4
5,311,748 - Psyr_4444 0.73 +0.6
5,311,901 - -0.6
5,312,091 + Psyr_4445 0.46 +0.4
5,312,091 + Psyr_4445 0.46 +1.7
5,312,091 + Psyr_4445 0.46 -0.2
5,312,091 + Psyr_4445 0.46 +0.9
5,312,091 + Psyr_4445 0.46 +0.6
5,312,092 - Psyr_4445 0.47 -1.3
5,312,092 - Psyr_4445 0.47 +1.6
5,312,092 - Psyr_4445 0.47 +0.4
5,312,092 - Psyr_4445 0.47 +0.8
5,312,132 + Psyr_4445 0.64 +0.6
5,312,160 + Psyr_4445 0.76 +0.1
5,312,160 + Psyr_4445 0.76 +0.9
5,312,161 - Psyr_4445 0.76 -0.1
5,312,186 - Psyr_4445 0.87 +0.4
5,312,197 + +1.0
5,312,197 + -0.7
5,312,197 + +3.0
5,312,197 + +0.3
5,312,198 - +1.0
5,312,198 - -0.9
5,312,198 - +0.4
5,312,260 + -0.0
5,312,261 - -0.6
5,312,261 - +1.0
5,312,261 - +1.6
5,312,355 - -0.1
5,312,428 + -0.6
5,312,528 + +0.5
5,312,528 + -0.6
5,312,528 + +0.5
5,312,529 - +0.4
5,312,529 - -1.5
5,312,557 - -0.4
5,312,609 + Psyr_4446 0.25 -1.0
5,312,609 + Psyr_4446 0.25 -0.2
5,312,609 + Psyr_4446 0.25 +0.7
5,312,609 + Psyr_4446 0.25 +0.8
5,312,609 + Psyr_4446 0.25 +0.3
5,312,609 + Psyr_4446 0.25 -1.8
5,312,609 + Psyr_4446 0.25 -0.7
5,312,609 + Psyr_4446 0.25 -1.2
5,312,610 - Psyr_4446 0.25 +0.9
5,312,610 - Psyr_4446 0.25 -0.6
5,312,618 + Psyr_4446 0.27 -0.0
5,312,618 + Psyr_4446 0.27 +1.1
5,312,619 - Psyr_4446 0.28 -0.1
5,312,619 - Psyr_4446 0.28 +1.7
5,312,741 + Psyr_4446 0.64 -1.3
5,312,741 + Psyr_4446 0.64 -2.6
5,312,741 + Psyr_4446 0.64 -0.2
5,312,741 + Psyr_4446 0.64 +0.8
5,312,741 + Psyr_4446 0.64 -0.8
5,312,741 + Psyr_4446 0.64 +1.6
5,312,741 + Psyr_4446 0.64 +0.2
5,312,741 + Psyr_4446 0.64 +0.2
5,312,741 + Psyr_4446 0.64 +0.5
5,312,741 + Psyr_4446 0.64 +0.2
5,312,741 + Psyr_4446 0.64 -1.6
5,312,741 + Psyr_4446 0.64 +0.2
5,312,741 + Psyr_4446 0.64 -1.0
5,312,741 + Psyr_4446 0.64 +0.0
5,312,741 + Psyr_4446 0.64 +0.4
5,312,741 + Psyr_4446 0.64 +0.5
5,312,742 - Psyr_4446 0.64 +2.2
5,312,742 - Psyr_4446 0.64 +1.0
5,312,742 - Psyr_4446 0.64 -0.5
5,312,742 - Psyr_4446 0.64 -1.1
5,312,742 - Psyr_4446 0.64 +1.3
5,312,742 - Psyr_4446 0.64 -1.1
5,312,742 - Psyr_4446 0.64 +0.9
5,312,742 - Psyr_4446 0.64 -0.4
5,312,742 - Psyr_4446 0.64 -1.5
5,312,742 - Psyr_4446 0.64 -0.5
5,312,742 - Psyr_4446 0.64 +0.6
5,312,742 - Psyr_4446 0.64 +0.4
5,312,742 - Psyr_4446 0.64 -0.0
5,312,742 - Psyr_4446 0.64 -0.3
5,312,775 - Psyr_4446 0.74 -2.5
5,312,775 - Psyr_4446 0.74 -0.3
5,312,775 - Psyr_4446 0.74 -0.8
5,312,861 + -1.1
5,312,861 + +0.1
5,312,861 + +1.0
5,312,861 + +0.5
5,312,862 - +1.4
5,312,862 - -2.2

Or see this region's nucleotide sequence