Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4379 and Psyr_4380 are separated by 188 nucleotides Psyr_4380 and Psyr_4381 are separated by 88 nucleotides Psyr_4381 and Psyr_4382 are separated by 255 nucleotides
Psyr_4379: Psyr_4379 - NUDIX hydrolase, at 5,235,551 to 5,236,096
_4379
Psyr_4380: Psyr_4380 - translation initiation factor 1 (eIF-1/SUI1), at 5,236,285 to 5,236,656
_4380
Psyr_4381: Psyr_4381 - arginine decarboxylase, at 5,236,745 to 5,238,658
_4381
Psyr_4382: Psyr_4382 - Uncharacterized protein conserved in bacteria-like protein, at 5,238,914 to 5,240,023
_4382
Position (kb) 5236
5237
5238
5239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5235.758 kb on + strand, within Psyr_4379 at 5235.758 kb on + strand, within Psyr_4379 at 5235.759 kb on - strand, within Psyr_4379 at 5235.759 kb on - strand, within Psyr_4379 at 5235.777 kb on + strand, within Psyr_4379 at 5235.812 kb on + strand, within Psyr_4379 at 5235.812 kb on + strand, within Psyr_4379 at 5235.813 kb on - strand, within Psyr_4379 at 5235.940 kb on - strand, within Psyr_4379 at 5236.027 kb on + strand, within Psyr_4379 at 5236.027 kb on + strand, within Psyr_4379 at 5236.027 kb on + strand, within Psyr_4379 at 5236.028 kb on - strand, within Psyr_4379 at 5236.028 kb on - strand, within Psyr_4379 at 5236.028 kb on - strand, within Psyr_4379 at 5236.068 kb on - strand at 5236.072 kb on + strand at 5236.073 kb on - strand at 5236.080 kb on + strand at 5236.081 kb on - strand at 5236.241 kb on + strand at 5236.328 kb on + strand, within Psyr_4380 at 5236.328 kb on + strand, within Psyr_4380 at 5236.329 kb on - strand, within Psyr_4380 at 5236.434 kb on - strand, within Psyr_4380 at 5236.434 kb on - strand, within Psyr_4380 at 5236.434 kb on - strand, within Psyr_4380 at 5236.639 kb on - strand at 5236.688 kb on + strand at 5236.688 kb on + strand at 5236.688 kb on + strand at 5236.689 kb on - strand at 5236.689 kb on - strand at 5236.689 kb on - strand at 5236.689 kb on - strand at 5236.727 kb on + strand at 5236.727 kb on + strand at 5236.727 kb on + strand at 5236.728 kb on - strand at 5236.728 kb on - strand at 5236.728 kb on - strand at 5236.728 kb on - strand at 5236.728 kb on - strand at 5236.728 kb on - strand at 5236.728 kb on - strand at 5236.731 kb on + strand at 5236.731 kb on + strand at 5236.731 kb on + strand at 5236.731 kb on + strand at 5236.731 kb on + strand at 5236.731 kb on + strand at 5236.731 kb on + strand at 5236.732 kb on - strand at 5236.732 kb on - strand at 5236.732 kb on - strand at 5236.765 kb on + strand at 5236.765 kb on + strand at 5236.765 kb on + strand at 5236.765 kb on + strand at 5236.765 kb on + strand at 5236.765 kb on + strand at 5236.766 kb on - strand at 5236.766 kb on - strand at 5236.839 kb on - strand at 5236.846 kb on + strand at 5236.910 kb on + strand at 5236.911 kb on - strand at 5237.051 kb on + strand, within Psyr_4381 at 5237.051 kb on + strand, within Psyr_4381 at 5237.051 kb on + strand, within Psyr_4381 at 5237.052 kb on - strand, within Psyr_4381 at 5237.052 kb on - strand, within Psyr_4381 at 5237.213 kb on + strand, within Psyr_4381 at 5237.361 kb on + strand, within Psyr_4381 at 5237.570 kb on + strand, within Psyr_4381 at 5237.573 kb on + strand, within Psyr_4381 at 5237.609 kb on + strand, within Psyr_4381 at 5237.609 kb on + strand, within Psyr_4381 at 5237.609 kb on + strand, within Psyr_4381 at 5237.609 kb on + strand, within Psyr_4381 at 5237.609 kb on + strand, within Psyr_4381 at 5237.609 kb on + strand, within Psyr_4381 at 5237.609 kb on + strand, within Psyr_4381 at 5237.609 kb on + strand, within Psyr_4381 at 5237.610 kb on - strand, within Psyr_4381 at 5237.610 kb on - strand, within Psyr_4381 at 5237.610 kb on - strand, within Psyr_4381 at 5237.610 kb on - strand, within Psyr_4381 at 5237.610 kb on - strand, within Psyr_4381 at 5237.610 kb on - strand, within Psyr_4381 at 5237.610 kb on - strand, within Psyr_4381 at 5237.681 kb on + strand, within Psyr_4381 at 5237.682 kb on - strand, within Psyr_4381 at 5237.696 kb on + strand, within Psyr_4381 at 5237.696 kb on + strand, within Psyr_4381 at 5237.696 kb on + strand, within Psyr_4381 at 5237.697 kb on - strand, within Psyr_4381 at 5237.697 kb on - strand, within Psyr_4381 at 5237.697 kb on - strand, within Psyr_4381 at 5237.761 kb on + strand, within Psyr_4381 at 5237.762 kb on - strand, within Psyr_4381 at 5237.762 kb on - strand, within Psyr_4381 at 5237.762 kb on - strand, within Psyr_4381 at 5237.762 kb on - strand, within Psyr_4381 at 5237.762 kb on - strand, within Psyr_4381 at 5237.945 kb on + strand, within Psyr_4381 at 5237.945 kb on + strand, within Psyr_4381 at 5237.945 kb on + strand, within Psyr_4381 at 5237.946 kb on - strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.039 kb on - strand, within Psyr_4381 at 5238.039 kb on - strand, within Psyr_4381 at 5238.039 kb on - strand, within Psyr_4381 at 5238.062 kb on + strand, within Psyr_4381 at 5238.062 kb on + strand, within Psyr_4381 at 5238.062 kb on + strand, within Psyr_4381 at 5238.063 kb on - strand, within Psyr_4381 at 5238.063 kb on - strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.293 kb on + strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.356 kb on + strand, within Psyr_4381 at 5238.356 kb on + strand, within Psyr_4381 at 5238.357 kb on - strand, within Psyr_4381 at 5238.446 kb on + strand, within Psyr_4381 at 5238.447 kb on - strand, within Psyr_4381 at 5238.447 kb on - strand, within Psyr_4381 at 5238.447 kb on - strand, within Psyr_4381 at 5238.519 kb on - strand at 5238.519 kb on - strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.644 kb on + strand at 5238.679 kb on + strand at 5238.679 kb on + strand at 5238.679 kb on + strand at 5238.680 kb on - strand at 5238.680 kb on - strand at 5238.680 kb on - strand at 5238.680 kb on - strand at 5238.783 kb on + strand at 5238.783 kb on + strand at 5238.784 kb on - strand at 5238.784 kb on - strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.825 kb on - strand at 5238.841 kb on + strand at 5238.841 kb on + strand at 5238.841 kb on + strand at 5238.841 kb on + strand at 5238.841 kb on + strand at 5238.842 kb on - strand at 5238.842 kb on - strand at 5238.842 kb on - strand at 5238.842 kb on - strand at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.190 kb on + strand, within Psyr_4382 at 5239.230 kb on + strand, within Psyr_4382 at 5239.246 kb on + strand, within Psyr_4382 at 5239.246 kb on + strand, within Psyr_4382 at 5239.246 kb on + strand, within Psyr_4382 at 5239.247 kb on - strand, within Psyr_4382
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,235,758 + Psyr_4379 0.38 +0.5 5,235,758 + Psyr_4379 0.38 +0.7 5,235,759 - Psyr_4379 0.38 -1.4 5,235,759 - Psyr_4379 0.38 -0.2 5,235,777 + Psyr_4379 0.41 +0.8 5,235,812 + Psyr_4379 0.48 +1.4 5,235,812 + Psyr_4379 0.48 +1.0 5,235,813 - Psyr_4379 0.48 -0.8 5,235,940 - Psyr_4379 0.71 -0.3 5,236,027 + Psyr_4379 0.87 +0.6 5,236,027 + Psyr_4379 0.87 +2.0 5,236,027 + Psyr_4379 0.87 +0.1 5,236,028 - Psyr_4379 0.87 -2.9 5,236,028 - Psyr_4379 0.87 +1.7 5,236,028 - Psyr_4379 0.87 +0.1 5,236,068 - -0.2 5,236,072 + -0.5 5,236,073 - -0.5 5,236,080 + +0.4 5,236,081 - +0.3 5,236,241 + +0.3 5,236,328 + Psyr_4380 0.12 -0.9 5,236,328 + Psyr_4380 0.12 +1.2 5,236,329 - Psyr_4380 0.12 -0.8 5,236,434 - Psyr_4380 0.40 +1.0 5,236,434 - Psyr_4380 0.40 -0.2 5,236,434 - Psyr_4380 0.40 -0.0 5,236,639 - +0.2 5,236,688 + +1.6 5,236,688 + +0.3 5,236,688 + +0.2 5,236,689 - -0.5 5,236,689 - -1.4 5,236,689 - -0.6 5,236,689 - +1.0 5,236,727 + +0.7 5,236,727 + +0.1 5,236,727 + -0.2 5,236,728 - -0.0 5,236,728 - -1.8 5,236,728 - -0.6 5,236,728 - -2.0 5,236,728 - +0.6 5,236,728 - -0.0 5,236,728 - -0.4 5,236,731 + -1.3 5,236,731 + -0.4 5,236,731 + +0.3 5,236,731 + +0.2 5,236,731 + -0.7 5,236,731 + -0.6 5,236,731 + +0.8 5,236,732 - -0.0 5,236,732 - -1.0 5,236,732 - +0.5 5,236,765 + -1.5 5,236,765 + -0.8 5,236,765 + +0.1 5,236,765 + -0.4 5,236,765 + +0.3 5,236,765 + -0.2 5,236,766 - +0.6 5,236,766 - -1.6 5,236,839 - -1.7 5,236,846 + -1.6 5,236,910 + -1.3 5,236,911 - -0.4 5,237,051 + Psyr_4381 0.16 -2.8 5,237,051 + Psyr_4381 0.16 -0.8 5,237,051 + Psyr_4381 0.16 -1.4 5,237,052 - Psyr_4381 0.16 -0.6 5,237,052 - Psyr_4381 0.16 +0.3 5,237,213 + Psyr_4381 0.24 -0.9 5,237,361 + Psyr_4381 0.32 -0.0 5,237,570 + Psyr_4381 0.43 -2.0 5,237,573 + Psyr_4381 0.43 +1.3 5,237,609 + Psyr_4381 0.45 -0.3 5,237,609 + Psyr_4381 0.45 -0.6 5,237,609 + Psyr_4381 0.45 -0.0 5,237,609 + Psyr_4381 0.45 +0.2 5,237,609 + Psyr_4381 0.45 -1.4 5,237,609 + Psyr_4381 0.45 -1.7 5,237,609 + Psyr_4381 0.45 +2.0 5,237,609 + Psyr_4381 0.45 -1.6 5,237,610 - Psyr_4381 0.45 -0.0 5,237,610 - Psyr_4381 0.45 -0.2 5,237,610 - Psyr_4381 0.45 -0.4 5,237,610 - Psyr_4381 0.45 +0.5 5,237,610 - Psyr_4381 0.45 -0.5 5,237,610 - Psyr_4381 0.45 -0.5 5,237,610 - Psyr_4381 0.45 +0.2 5,237,681 + Psyr_4381 0.49 +0.3 5,237,682 - Psyr_4381 0.49 -0.3 5,237,696 + Psyr_4381 0.50 -0.5 5,237,696 + Psyr_4381 0.50 -3.0 5,237,696 + Psyr_4381 0.50 -1.0 5,237,697 - Psyr_4381 0.50 -0.0 5,237,697 - Psyr_4381 0.50 -0.9 5,237,697 - Psyr_4381 0.50 -0.4 5,237,761 + Psyr_4381 0.53 -0.7 5,237,762 - Psyr_4381 0.53 +1.1 5,237,762 - Psyr_4381 0.53 -0.8 5,237,762 - Psyr_4381 0.53 -0.2 5,237,762 - Psyr_4381 0.53 -1.8 5,237,762 - Psyr_4381 0.53 -0.6 5,237,945 + Psyr_4381 0.63 -0.8 5,237,945 + Psyr_4381 0.63 -0.0 5,237,945 + Psyr_4381 0.63 -1.5 5,237,946 - Psyr_4381 0.63 -1.8 5,237,963 + Psyr_4381 0.64 -1.8 5,237,963 + Psyr_4381 0.64 -0.4 5,237,963 + Psyr_4381 0.64 +0.3 5,237,963 + Psyr_4381 0.64 -2.8 5,237,963 + Psyr_4381 0.64 -2.0 5,237,963 + Psyr_4381 0.64 -1.6 5,237,963 + Psyr_4381 0.64 +0.6 5,237,963 + Psyr_4381 0.64 +0.7 5,237,964 - Psyr_4381 0.64 -0.6 5,237,964 - Psyr_4381 0.64 -1.0 5,237,964 - Psyr_4381 0.64 -0.2 5,237,964 - Psyr_4381 0.64 -1.6 5,237,964 - Psyr_4381 0.64 -1.0 5,237,964 - Psyr_4381 0.64 -0.5 5,237,964 - Psyr_4381 0.64 -1.0 5,237,964 - Psyr_4381 0.64 -0.3 5,237,964 - Psyr_4381 0.64 -0.0 5,237,964 - Psyr_4381 0.64 +0.2 5,237,964 - Psyr_4381 0.64 -1.0 5,237,964 - Psyr_4381 0.64 -1.0 5,238,038 + Psyr_4381 0.68 +0.2 5,238,038 + Psyr_4381 0.68 -1.4 5,238,038 + Psyr_4381 0.68 -0.6 5,238,038 + Psyr_4381 0.68 +0.6 5,238,038 + Psyr_4381 0.68 -1.2 5,238,039 - Psyr_4381 0.68 +0.4 5,238,039 - Psyr_4381 0.68 -0.4 5,238,039 - Psyr_4381 0.68 -2.3 5,238,062 + Psyr_4381 0.69 +1.0 5,238,062 + Psyr_4381 0.69 -1.4 5,238,062 + Psyr_4381 0.69 -0.6 5,238,063 - Psyr_4381 0.69 +0.6 5,238,063 - Psyr_4381 0.69 -1.0 5,238,137 + Psyr_4381 0.73 -0.9 5,238,137 + Psyr_4381 0.73 -2.0 5,238,137 + Psyr_4381 0.73 -0.8 5,238,137 + Psyr_4381 0.73 +0.6 5,238,137 + Psyr_4381 0.73 -0.2 5,238,137 + Psyr_4381 0.73 -0.4 5,238,137 + Psyr_4381 0.73 -0.7 5,238,137 + Psyr_4381 0.73 -1.8 5,238,137 + Psyr_4381 0.73 +0.7 5,238,137 + Psyr_4381 0.73 +0.6 5,238,137 + Psyr_4381 0.73 -1.2 5,238,138 - Psyr_4381 0.73 -2.7 5,238,138 - Psyr_4381 0.73 -0.9 5,238,138 - Psyr_4381 0.73 -2.0 5,238,138 - Psyr_4381 0.73 -1.4 5,238,138 - Psyr_4381 0.73 +0.2 5,238,138 - Psyr_4381 0.73 -2.6 5,238,138 - Psyr_4381 0.73 -1.3 5,238,138 - Psyr_4381 0.73 -2.4 5,238,138 - Psyr_4381 0.73 -0.6 5,238,138 - Psyr_4381 0.73 -1.5 5,238,138 - Psyr_4381 0.73 -0.8 5,238,138 - Psyr_4381 0.73 -1.0 5,238,293 + Psyr_4381 0.81 -0.0 5,238,294 - Psyr_4381 0.81 -1.7 5,238,294 - Psyr_4381 0.81 -0.3 5,238,294 - Psyr_4381 0.81 -1.4 5,238,294 - Psyr_4381 0.81 -1.3 5,238,294 - Psyr_4381 0.81 -0.4 5,238,356 + Psyr_4381 0.84 +0.4 5,238,356 + Psyr_4381 0.84 -0.9 5,238,357 - Psyr_4381 0.84 -0.9 5,238,446 + Psyr_4381 0.89 -0.5 5,238,447 - Psyr_4381 0.89 -2.5 5,238,447 - Psyr_4381 0.89 -0.4 5,238,447 - Psyr_4381 0.89 +0.4 5,238,519 - -0.8 5,238,519 - -0.6 5,238,602 + -0.4 5,238,602 + -0.5 5,238,602 + -0.9 5,238,602 + -0.7 5,238,602 + -1.2 5,238,603 - -0.8 5,238,603 - -0.0 5,238,603 - +0.5 5,238,603 - -0.5 5,238,644 + -2.4 5,238,679 + -0.5 5,238,679 + +0.2 5,238,679 + +0.5 5,238,680 - -2.9 5,238,680 - -1.4 5,238,680 - -1.0 5,238,680 - -0.9 5,238,783 + -0.4 5,238,783 + +0.2 5,238,784 - -0.5 5,238,784 - -0.6 5,238,801 + +0.7 5,238,801 + -0.4 5,238,801 + +0.2 5,238,801 + -0.8 5,238,801 + +0.6 5,238,801 + -1.4 5,238,802 - +0.2 5,238,802 - +1.0 5,238,802 - +1.3 5,238,802 - +0.1 5,238,825 - -0.4 5,238,841 + -0.4 5,238,841 + +1.4 5,238,841 + +0.5 5,238,841 + -0.2 5,238,841 + -0.7 5,238,842 - +1.0 5,238,842 - +0.1 5,238,842 - +0.8 5,238,842 - -0.4 5,239,079 + Psyr_4382 0.15 +0.5 5,239,079 + Psyr_4382 0.15 -1.0 5,239,079 + Psyr_4382 0.15 -0.1 5,239,079 + Psyr_4382 0.15 +0.3 5,239,079 + Psyr_4382 0.15 -0.3 5,239,079 + Psyr_4382 0.15 -0.6 5,239,079 + Psyr_4382 0.15 +0.1 5,239,080 - Psyr_4382 0.15 +0.2 5,239,080 - Psyr_4382 0.15 -0.0 5,239,080 - Psyr_4382 0.15 +0.5 5,239,190 + Psyr_4382 0.25 -0.6 5,239,230 + Psyr_4382 0.28 -0.6 5,239,246 + Psyr_4382 0.30 +0.4 5,239,246 + Psyr_4382 0.30 -2.3 5,239,246 + Psyr_4382 0.30 +0.4 5,239,247 - Psyr_4382 0.30 +0.6
Or see this region's nucleotide sequence