Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4227 and Psyr_4228 are separated by 299 nucleotides Psyr_4228 and Psyr_4229 are separated by 113 nucleotides
Psyr_4227: Psyr_4227 - Dihydrodipicolinate synthetase, at 5,034,437 to 5,035,348
_4227
Psyr_4228: Psyr_4228 - transcriptional regulator, GntR family, at 5,035,648 to 5,036,397
_4228
Psyr_4229: Psyr_4229 - ABC transporter:ABC transporter, N-terminal, at 5,036,511 to 5,038,229
_4229
Position (kb) 5035
5036
5037 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5034.669 kb on + strand, within Psyr_4227 at 5034.669 kb on + strand, within Psyr_4227 at 5034.670 kb on - strand, within Psyr_4227 at 5034.670 kb on - strand, within Psyr_4227 at 5034.718 kb on - strand, within Psyr_4227 at 5034.742 kb on - strand, within Psyr_4227 at 5034.753 kb on + strand, within Psyr_4227 at 5034.754 kb on - strand, within Psyr_4227 at 5034.754 kb on - strand, within Psyr_4227 at 5034.832 kb on + strand, within Psyr_4227 at 5034.927 kb on + strand, within Psyr_4227 at 5034.927 kb on + strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5035.008 kb on + strand, within Psyr_4227 at 5035.009 kb on - strand, within Psyr_4227 at 5035.009 kb on - strand, within Psyr_4227 at 5035.091 kb on + strand, within Psyr_4227 at 5035.091 kb on + strand, within Psyr_4227 at 5035.092 kb on - strand, within Psyr_4227 at 5035.349 kb on + strand at 5035.349 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.431 kb on - strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.566 kb on - strand at 5035.566 kb on - strand at 5035.566 kb on - strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.586 kb on - strand at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.895 kb on + strand, within Psyr_4228 at 5035.896 kb on - strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.313 kb on + strand, within Psyr_4228 at 5036.420 kb on + strand at 5036.421 kb on - strand at 5036.421 kb on - strand at 5036.421 kb on - strand at 5036.432 kb on - strand at 5036.437 kb on + strand at 5036.437 kb on + strand at 5036.438 kb on - strand at 5036.438 kb on - strand at 5036.438 kb on - strand at 5036.438 kb on - strand at 5036.451 kb on + strand at 5036.451 kb on + strand at 5036.451 kb on + strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.485 kb on + strand at 5036.485 kb on + strand at 5036.485 kb on + strand at 5036.486 kb on - strand at 5036.486 kb on - strand at 5036.486 kb on - strand at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.821 kb on - strand, within Psyr_4229 at 5036.902 kb on + strand, within Psyr_4229 at 5036.903 kb on - strand, within Psyr_4229 at 5037.235 kb on + strand, within Psyr_4229 at 5037.236 kb on - strand, within Psyr_4229 at 5037.236 kb on - strand, within Psyr_4229 at 5037.328 kb on + strand, within Psyr_4229 at 5037.328 kb on + strand, within Psyr_4229 at 5037.329 kb on - strand, within Psyr_4229
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,034,669 + Psyr_4227 0.25 +0.3 5,034,669 + Psyr_4227 0.25 -1.0 5,034,670 - Psyr_4227 0.26 +0.7 5,034,670 - Psyr_4227 0.26 -0.6 5,034,718 - Psyr_4227 0.31 +0.4 5,034,742 - Psyr_4227 0.33 +2.6 5,034,753 + Psyr_4227 0.35 -1.8 5,034,754 - Psyr_4227 0.35 -2.0 5,034,754 - Psyr_4227 0.35 +0.3 5,034,832 + Psyr_4227 0.43 -1.8 5,034,927 + Psyr_4227 0.54 -1.0 5,034,927 + Psyr_4227 0.54 -0.0 5,034,928 - Psyr_4227 0.54 +0.8 5,034,928 - Psyr_4227 0.54 -0.6 5,034,928 - Psyr_4227 0.54 -0.1 5,034,928 - Psyr_4227 0.54 +0.2 5,034,928 - Psyr_4227 0.54 -0.5 5,035,008 + Psyr_4227 0.63 +1.0 5,035,009 - Psyr_4227 0.63 -0.4 5,035,009 - Psyr_4227 0.63 +0.3 5,035,091 + Psyr_4227 0.72 +1.1 5,035,091 + Psyr_4227 0.72 +0.4 5,035,092 - Psyr_4227 0.72 -1.5 5,035,349 + -1.2 5,035,349 + -0.3 5,035,371 + -0.6 5,035,371 + -1.0 5,035,371 + +0.5 5,035,371 + +1.6 5,035,371 + +0.5 5,035,371 + +0.3 5,035,372 - +0.6 5,035,372 - +1.3 5,035,372 - +1.0 5,035,372 - -1.3 5,035,372 - -1.0 5,035,372 - +1.4 5,035,372 - -0.4 5,035,372 - -1.9 5,035,372 - +1.6 5,035,431 - -0.5 5,035,507 + +0.0 5,035,507 + +1.6 5,035,507 + +0.7 5,035,507 + +0.6 5,035,507 + -1.3 5,035,507 + +0.0 5,035,507 + -0.4 5,035,507 + +0.6 5,035,507 + -0.2 5,035,508 - +0.2 5,035,508 - -1.8 5,035,508 - +0.3 5,035,508 - -0.5 5,035,508 - -1.8 5,035,508 - -0.5 5,035,508 - +0.6 5,035,508 - -1.0 5,035,508 - +1.2 5,035,508 - -1.9 5,035,508 - -1.6 5,035,565 + +0.1 5,035,565 + +0.1 5,035,565 + -0.2 5,035,565 + -0.9 5,035,565 + +0.4 5,035,566 - +0.5 5,035,566 - +1.7 5,035,566 - -1.0 5,035,585 + +1.3 5,035,585 + +1.1 5,035,585 + +1.0 5,035,585 + +1.7 5,035,585 + -1.5 5,035,586 - -0.4 5,035,800 + Psyr_4228 0.20 -0.9 5,035,800 + Psyr_4228 0.20 -0.2 5,035,800 + Psyr_4228 0.20 -1.0 5,035,800 + Psyr_4228 0.20 -0.8 5,035,800 + Psyr_4228 0.20 -0.3 5,035,800 + Psyr_4228 0.20 -1.3 5,035,800 + Psyr_4228 0.20 +1.6 5,035,800 + Psyr_4228 0.20 -1.3 5,035,801 - Psyr_4228 0.20 -1.3 5,035,801 - Psyr_4228 0.20 -1.0 5,035,801 - Psyr_4228 0.20 +0.4 5,035,801 - Psyr_4228 0.20 -0.8 5,035,801 - Psyr_4228 0.20 +0.6 5,035,801 - Psyr_4228 0.20 -1.2 5,035,801 - Psyr_4228 0.20 -0.7 5,035,802 + Psyr_4228 0.21 +0.3 5,035,802 + Psyr_4228 0.21 -2.0 5,035,802 + Psyr_4228 0.21 -0.6 5,035,802 + Psyr_4228 0.21 -0.0 5,035,802 + Psyr_4228 0.21 -0.0 5,035,802 + Psyr_4228 0.21 -0.0 5,035,802 + Psyr_4228 0.21 -0.2 5,035,803 - Psyr_4228 0.21 -1.8 5,035,803 - Psyr_4228 0.21 -1.9 5,035,803 - Psyr_4228 0.21 -0.6 5,035,803 - Psyr_4228 0.21 +0.4 5,035,803 - Psyr_4228 0.21 +0.3 5,035,803 - Psyr_4228 0.21 -1.3 5,035,803 - Psyr_4228 0.21 -0.6 5,035,803 - Psyr_4228 0.21 -1.3 5,035,803 - Psyr_4228 0.21 +0.8 5,035,803 - Psyr_4228 0.21 -0.3 5,035,803 - Psyr_4228 0.21 -2.5 5,035,895 + Psyr_4228 0.33 -0.1 5,035,896 - Psyr_4228 0.33 +0.1 5,036,092 + Psyr_4228 0.59 -0.8 5,036,092 + Psyr_4228 0.59 +1.3 5,036,093 - Psyr_4228 0.59 -0.3 5,036,093 - Psyr_4228 0.59 +0.2 5,036,093 - Psyr_4228 0.59 -0.9 5,036,093 - Psyr_4228 0.59 -1.6 5,036,313 + Psyr_4228 0.89 -0.9 5,036,420 + -0.5 5,036,421 - +0.5 5,036,421 - -0.8 5,036,421 - +0.6 5,036,432 - -1.1 5,036,437 + -0.2 5,036,437 + -0.9 5,036,438 - +1.0 5,036,438 - +0.2 5,036,438 - -0.3 5,036,438 - -0.7 5,036,451 + -0.6 5,036,451 + +0.9 5,036,451 + -1.6 5,036,452 - -0.6 5,036,452 - +0.6 5,036,452 - +0.4 5,036,452 - -0.2 5,036,485 + +1.4 5,036,485 + +0.1 5,036,485 + -1.3 5,036,486 - -0.4 5,036,486 - +1.1 5,036,486 - -0.0 5,036,686 + Psyr_4229 0.10 -0.3 5,036,686 + Psyr_4229 0.10 +0.5 5,036,686 + Psyr_4229 0.10 +0.4 5,036,686 + Psyr_4229 0.10 -2.1 5,036,686 + Psyr_4229 0.10 -0.6 5,036,686 + Psyr_4229 0.10 +1.0 5,036,687 - Psyr_4229 0.10 -0.0 5,036,687 - Psyr_4229 0.10 +0.1 5,036,687 - Psyr_4229 0.10 -0.1 5,036,687 - Psyr_4229 0.10 -0.6 5,036,687 - Psyr_4229 0.10 +0.2 5,036,687 - Psyr_4229 0.10 +0.2 5,036,687 - Psyr_4229 0.10 +0.5 5,036,687 - Psyr_4229 0.10 +1.7 5,036,687 - Psyr_4229 0.10 -1.8 5,036,687 - Psyr_4229 0.10 -0.5 5,036,687 - Psyr_4229 0.10 -0.1 5,036,687 - Psyr_4229 0.10 -0.2 5,036,687 - Psyr_4229 0.10 -1.0 5,036,687 - Psyr_4229 0.10 -0.2 5,036,821 - Psyr_4229 0.18 -1.0 5,036,902 + Psyr_4229 0.23 -0.7 5,036,903 - Psyr_4229 0.23 -1.6 5,037,235 + Psyr_4229 0.42 +0.8 5,037,236 - Psyr_4229 0.42 -1.0 5,037,236 - Psyr_4229 0.42 +0.2 5,037,328 + Psyr_4229 0.48 -1.0 5,037,328 + Psyr_4229 0.48 +1.0 5,037,329 - Psyr_4229 0.48 -0.1
Or see this region's nucleotide sequence