Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4199 and Psyr_4200 are separated by 63 nucleotides Psyr_4200 and Psyr_4201 overlap by 8 nucleotides Psyr_4201 and Psyr_4202 are separated by 7 nucleotides Psyr_4202 and Psyr_4203 are separated by 80 nucleotides Psyr_4203 and Psyr_4204 are separated by 307 nucleotides
Psyr_4199: Psyr_4199 - SmpA/OmlA, at 4,995,788 to 4,996,309
_4199
Psyr_4200: Psyr_4200 - Protein of unknown function UPF0125, at 4,996,373 to 4,996,687
_4200
Psyr_4201: Psyr_4201 - cyclase/dehydrase, at 4,996,680 to 4,997,114
_4201
Psyr_4202: Psyr_4202 - Sodium:neurotransmitter symporter, at 4,997,122 to 4,998,558
_4202
Psyr_4203: Psyr_4203 - SsrA-binding protein, at 4,998,639 to 4,999,121
_4203
Psyr_4204: Psyr_4204 - conserved hypothetical protein, at 4,999,429 to 4,999,713
_4204
Position (kb) 4997
4998
4999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4996.455 kb on + strand, within Psyr_4200 at 4996.456 kb on - strand, within Psyr_4200 at 4996.523 kb on - strand, within Psyr_4200 at 4996.523 kb on - strand, within Psyr_4200 at 4996.613 kb on + strand, within Psyr_4200 at 4996.614 kb on - strand, within Psyr_4200 at 4996.632 kb on - strand, within Psyr_4200 at 4996.632 kb on - strand, within Psyr_4200 at 4996.632 kb on - strand, within Psyr_4200 at 4996.643 kb on + strand, within Psyr_4200 at 4996.644 kb on - strand, within Psyr_4200 at 4996.653 kb on + strand, within Psyr_4200 at 4996.653 kb on + strand, within Psyr_4200 at 4996.654 kb on - strand, within Psyr_4200 at 4996.654 kb on - strand, within Psyr_4200 at 4996.654 kb on - strand, within Psyr_4200 at 4996.664 kb on + strand at 4996.665 kb on - strand at 4997.101 kb on - strand at 4997.175 kb on - strand at 4997.270 kb on - strand, within Psyr_4202 at 4997.270 kb on - strand, within Psyr_4202 at 4997.272 kb on + strand, within Psyr_4202 at 4997.272 kb on + strand, within Psyr_4202 at 4997.272 kb on + strand, within Psyr_4202 at 4997.273 kb on - strand, within Psyr_4202 at 4997.273 kb on - strand, within Psyr_4202 at 4997.273 kb on - strand, within Psyr_4202 at 4997.367 kb on - strand, within Psyr_4202 at 4997.367 kb on - strand, within Psyr_4202 at 4997.367 kb on - strand, within Psyr_4202 at 4997.418 kb on + strand, within Psyr_4202 at 4997.418 kb on + strand, within Psyr_4202 at 4997.418 kb on + strand, within Psyr_4202 at 4997.419 kb on - strand, within Psyr_4202 at 4997.461 kb on - strand, within Psyr_4202 at 4997.496 kb on + strand, within Psyr_4202 at 4997.517 kb on - strand, within Psyr_4202 at 4997.537 kb on - strand, within Psyr_4202 at 4997.576 kb on - strand, within Psyr_4202 at 4997.628 kb on - strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4998.101 kb on + strand, within Psyr_4202 at 4998.102 kb on - strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.382 kb on + strand, within Psyr_4202 at 4998.382 kb on + strand, within Psyr_4202 at 4998.383 kb on - strand, within Psyr_4202 at 4998.417 kb on - strand at 4998.417 kb on - strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.625 kb on - strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.683 kb on + strand at 4998.702 kb on + strand, within Psyr_4203 at 4998.702 kb on + strand, within Psyr_4203 at 4998.779 kb on - strand, within Psyr_4203 at 4998.795 kb on + strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4999.119 kb on + strand at 4999.119 kb on + strand at 4999.120 kb on - strand at 4999.174 kb on + strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.179 kb on - strand at 4999.179 kb on - strand at 4999.280 kb on + strand at 4999.281 kb on - strand at 4999.291 kb on - strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.307 kb on - strand at 4999.307 kb on - strand at 4999.414 kb on + strand at 4999.414 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.548 kb on + strand, within Psyr_4204 at 4999.548 kb on + strand, within Psyr_4204
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 4,996,455 + Psyr_4200 0.26 -1.5 4,996,456 - Psyr_4200 0.26 -0.0 4,996,523 - Psyr_4200 0.48 +0.3 4,996,523 - Psyr_4200 0.48 -1.5 4,996,613 + Psyr_4200 0.76 -1.1 4,996,614 - Psyr_4200 0.77 -1.2 4,996,632 - Psyr_4200 0.82 +1.8 4,996,632 - Psyr_4200 0.82 -0.4 4,996,632 - Psyr_4200 0.82 -0.1 4,996,643 + Psyr_4200 0.86 +0.4 4,996,644 - Psyr_4200 0.86 -0.0 4,996,653 + Psyr_4200 0.89 +0.2 4,996,653 + Psyr_4200 0.89 -0.5 4,996,654 - Psyr_4200 0.89 -0.3 4,996,654 - Psyr_4200 0.89 -0.4 4,996,654 - Psyr_4200 0.89 -1.2 4,996,664 + -2.5 4,996,665 - -0.5 4,997,101 - -0.0 4,997,175 - +0.1 4,997,270 - Psyr_4202 0.10 -2.2 4,997,270 - Psyr_4202 0.10 -0.7 4,997,272 + Psyr_4202 0.10 -0.1 4,997,272 + Psyr_4202 0.10 +1.0 4,997,272 + Psyr_4202 0.10 +1.6 4,997,273 - Psyr_4202 0.11 -2.0 4,997,273 - Psyr_4202 0.11 -2.8 4,997,273 - Psyr_4202 0.11 -0.1 4,997,367 - Psyr_4202 0.17 -0.2 4,997,367 - Psyr_4202 0.17 +0.2 4,997,367 - Psyr_4202 0.17 -1.3 4,997,418 + Psyr_4202 0.21 -0.2 4,997,418 + Psyr_4202 0.21 -0.2 4,997,418 + Psyr_4202 0.21 -0.9 4,997,419 - Psyr_4202 0.21 +1.0 4,997,461 - Psyr_4202 0.24 -1.6 4,997,496 + Psyr_4202 0.26 +0.2 4,997,517 - Psyr_4202 0.27 -1.0 4,997,537 - Psyr_4202 0.29 +1.0 4,997,576 - Psyr_4202 0.32 -0.1 4,997,628 - Psyr_4202 0.35 -1.3 4,997,786 + Psyr_4202 0.46 -0.0 4,997,786 + Psyr_4202 0.46 -0.6 4,997,786 + Psyr_4202 0.46 -0.6 4,997,786 + Psyr_4202 0.46 +0.1 4,997,786 + Psyr_4202 0.46 +1.0 4,997,786 + Psyr_4202 0.46 -2.3 4,997,787 - Psyr_4202 0.46 -1.5 4,997,787 - Psyr_4202 0.46 -1.9 4,997,787 - Psyr_4202 0.46 -0.5 4,997,787 - Psyr_4202 0.46 +1.3 4,998,101 + Psyr_4202 0.68 -1.2 4,998,102 - Psyr_4202 0.68 -1.2 4,998,161 + Psyr_4202 0.72 +0.4 4,998,161 + Psyr_4202 0.72 -1.2 4,998,161 + Psyr_4202 0.72 -1.6 4,998,161 + Psyr_4202 0.72 -0.0 4,998,161 + Psyr_4202 0.72 +0.1 4,998,161 + Psyr_4202 0.72 +0.5 4,998,162 - Psyr_4202 0.72 +0.5 4,998,162 - Psyr_4202 0.72 +1.0 4,998,162 - Psyr_4202 0.72 -1.6 4,998,162 - Psyr_4202 0.72 -0.6 4,998,162 - Psyr_4202 0.72 +0.7 4,998,162 - Psyr_4202 0.72 -0.8 4,998,162 - Psyr_4202 0.72 +0.1 4,998,162 - Psyr_4202 0.72 -1.7 4,998,189 + Psyr_4202 0.74 -0.0 4,998,189 + Psyr_4202 0.74 -1.6 4,998,189 + Psyr_4202 0.74 -0.7 4,998,189 + Psyr_4202 0.74 -0.0 4,998,190 - Psyr_4202 0.74 -0.4 4,998,190 - Psyr_4202 0.74 -1.7 4,998,190 - Psyr_4202 0.74 -1.4 4,998,191 + Psyr_4202 0.74 -0.6 4,998,191 + Psyr_4202 0.74 +0.2 4,998,191 + Psyr_4202 0.74 -0.3 4,998,191 + Psyr_4202 0.74 -1.1 4,998,191 + Psyr_4202 0.74 -2.3 4,998,191 + Psyr_4202 0.74 -0.1 4,998,191 + Psyr_4202 0.74 -0.2 4,998,191 + Psyr_4202 0.74 -1.0 4,998,192 - Psyr_4202 0.74 +0.7 4,998,192 - Psyr_4202 0.74 +0.7 4,998,192 - Psyr_4202 0.74 -0.0 4,998,382 + Psyr_4202 0.88 +0.1 4,998,382 + Psyr_4202 0.88 -0.6 4,998,383 - Psyr_4202 0.88 -1.0 4,998,417 - -0.1 4,998,417 - -1.0 4,998,624 + -0.2 4,998,624 + -0.4 4,998,624 + -2.4 4,998,624 + -3.2 4,998,625 - -1.0 4,998,626 + -2.2 4,998,626 + -1.8 4,998,626 + -1.0 4,998,683 + -1.6 4,998,702 + Psyr_4203 0.13 -2.0 4,998,702 + Psyr_4203 0.13 -1.8 4,998,779 - Psyr_4203 0.29 -1.3 4,998,795 + Psyr_4203 0.32 -0.0 4,998,796 - Psyr_4203 0.33 -0.6 4,998,796 - Psyr_4203 0.33 -0.6 4,999,119 + +0.3 4,999,119 + -0.5 4,999,120 - -0.6 4,999,174 + -2.0 4,999,175 - -0.4 4,999,175 - +0.3 4,999,175 - +0.2 4,999,175 - -0.6 4,999,175 - -1.3 4,999,175 - -2.7 4,999,175 - -0.2 4,999,175 - +0.4 4,999,175 - -1.7 4,999,179 - -1.2 4,999,179 - -0.8 4,999,280 + +1.4 4,999,281 - -0.5 4,999,291 - +3.6 4,999,306 + +0.2 4,999,306 + +0.3 4,999,306 + +0.5 4,999,307 - -0.3 4,999,307 - +1.0 4,999,414 + +1.0 4,999,414 + -0.7 4,999,428 + -0.0 4,999,428 + -1.6 4,999,428 + +3.3 4,999,428 + +2.0 4,999,428 + -0.3 4,999,428 + +0.4 4,999,428 + -0.6 4,999,428 + -0.2 4,999,428 + +0.5 4,999,428 + -1.3 4,999,428 + -0.4 4,999,428 + -0.4 4,999,428 + -0.5 4,999,428 + +2.4 4,999,428 + -1.3 4,999,428 + -0.0 4,999,428 + +0.0 4,999,429 - +0.1 4,999,429 - -0.2 4,999,429 - +0.5 4,999,429 - +0.3 4,999,429 - -0.3 4,999,429 - -0.8 4,999,429 - +0.3 4,999,429 - +2.0 4,999,429 - +1.0 4,999,429 - -0.6 4,999,429 - +1.0 4,999,429 - -1.8 4,999,429 - -0.3 4,999,429 - +1.3 4,999,429 - +1.3 4,999,429 - +0.6 4,999,429 - +0.7 4,999,429 - -0.3 4,999,429 - -1.8 4,999,548 + Psyr_4204 0.42 -0.0 4,999,548 + Psyr_4204 0.42 +0.6
Or see this region's nucleotide sequence