Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4177

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4176 and Psyr_4177 are separated by 175 nucleotidesPsyr_4177 and Psyr_4178 are separated by 160 nucleotides Psyr_4176: Psyr_4176 - Polyribonucleotide nucleotidyltransferase, at 4,967,358 to 4,969,463 _4176 Psyr_4177: Psyr_4177 - SSU ribosomal protein S15P, at 4,969,639 to 4,969,908 _4177 Psyr_4178: Psyr_4178 - tRNA pseudouridine synthase B, at 4,970,069 to 4,970,986 _4178 Position (kb) 4969 4970Strain fitness (log2 ratio) -3 -2 -1 0 1at 4970.218 kb on - strand, within Psyr_4178at 4970.401 kb on - strand, within Psyr_4178at 4970.401 kb on - strand, within Psyr_4178at 4970.401 kb on - strand, within Psyr_4178at 4970.401 kb on - strand, within Psyr_4178at 4970.401 kb on - strand, within Psyr_4178at 4970.401 kb on - strand, within Psyr_4178at 4970.401 kb on - strand, within Psyr_4178at 4970.452 kb on - strand, within Psyr_4178at 4970.452 kb on - strand, within Psyr_4178at 4970.452 kb on - strand, within Psyr_4178at 4970.508 kb on - strand, within Psyr_4178at 4970.508 kb on - strand, within Psyr_4178at 4970.525 kb on - strand, within Psyr_4178at 4970.525 kb on - strand, within Psyr_4178at 4970.525 kb on - strand, within Psyr_4178at 4970.525 kb on - strand, within Psyr_4178at 4970.553 kb on - strand, within Psyr_4178at 4970.577 kb on + strand, within Psyr_4178at 4970.578 kb on - strand, within Psyr_4178at 4970.578 kb on - strand, within Psyr_4178at 4970.578 kb on - strand, within Psyr_4178at 4970.610 kb on + strand, within Psyr_4178at 4970.610 kb on + strand, within Psyr_4178at 4970.610 kb on + strand, within Psyr_4178at 4970.611 kb on - strand, within Psyr_4178at 4970.611 kb on - strand, within Psyr_4178at 4970.622 kb on - strand, within Psyr_4178at 4970.760 kb on + strand, within Psyr_4178at 4970.761 kb on - strand, within Psyr_4178at 4970.761 kb on - strand, within Psyr_4178at 4970.784 kb on + strand, within Psyr_4178at 4970.785 kb on - strand, within Psyr_4178

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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4,970,218 - Psyr_4178 0.16 +1.0
4,970,401 - Psyr_4178 0.36 -1.3
4,970,401 - Psyr_4178 0.36 -2.0
4,970,401 - Psyr_4178 0.36 +0.7
4,970,401 - Psyr_4178 0.36 -2.0
4,970,401 - Psyr_4178 0.36 -1.3
4,970,401 - Psyr_4178 0.36 +1.0
4,970,401 - Psyr_4178 0.36 -0.9
4,970,452 - Psyr_4178 0.42 -1.3
4,970,452 - Psyr_4178 0.42 -0.6
4,970,452 - Psyr_4178 0.42 -0.0
4,970,508 - Psyr_4178 0.48 -1.2
4,970,508 - Psyr_4178 0.48 -1.7
4,970,525 - Psyr_4178 0.50 +1.0
4,970,525 - Psyr_4178 0.50 -0.3
4,970,525 - Psyr_4178 0.50 -1.1
4,970,525 - Psyr_4178 0.50 -0.6
4,970,553 - Psyr_4178 0.53 -1.0
4,970,577 + Psyr_4178 0.55 -0.0
4,970,578 - Psyr_4178 0.55 -1.6
4,970,578 - Psyr_4178 0.55 -2.9
4,970,578 - Psyr_4178 0.55 -1.4
4,970,610 + Psyr_4178 0.59 +1.1
4,970,610 + Psyr_4178 0.59 +0.3
4,970,610 + Psyr_4178 0.59 -0.0
4,970,611 - Psyr_4178 0.59 -0.4
4,970,611 - Psyr_4178 0.59 +0.4
4,970,622 - Psyr_4178 0.60 -0.9
4,970,760 + Psyr_4178 0.75 -0.8
4,970,761 - Psyr_4178 0.75 -2.4
4,970,761 - Psyr_4178 0.75 -3.0
4,970,784 + Psyr_4178 0.78 -0.3
4,970,785 - Psyr_4178 0.78 +0.2

Or see this region's nucleotide sequence