Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3912 and Psyr_3913 are separated by 10 nucleotides Psyr_3913 and Psyr_3914 are separated by 219 nucleotides Psyr_3914 and Psyr_3915 are separated by 67 nucleotides
Psyr_3912: Psyr_3912 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,654,401 to 4,656,308
_3912
Psyr_3913: Psyr_3913 - Helix-turn-helix, Fis-type, at 4,656,319 to 4,657,647
_3913
Psyr_3914: Psyr_3914 - DSBA oxidoreductase, at 4,657,867 to 4,658,514
_3914
Psyr_3915: Psyr_3915 - Alpha/beta hydrolase fold protein, at 4,658,582 to 4,659,574
_3915
Position (kb) 4656
4657
4658 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4655.605 kb on + strand, within Psyr_3912 at 4655.605 kb on + strand, within Psyr_3912 at 4655.605 kb on + strand, within Psyr_3912 at 4655.606 kb on - strand, within Psyr_3912 at 4656.031 kb on + strand, within Psyr_3912 at 4656.032 kb on - strand, within Psyr_3912 at 4656.076 kb on + strand, within Psyr_3912 at 4656.326 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.371 kb on + strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.372 kb on - strand at 4656.453 kb on + strand, within Psyr_3913 at 4656.454 kb on - strand, within Psyr_3913 at 4656.623 kb on - strand, within Psyr_3913 at 4656.833 kb on + strand, within Psyr_3913 at 4656.834 kb on - strand, within Psyr_3913 at 4657.172 kb on + strand, within Psyr_3913 at 4657.234 kb on + strand, within Psyr_3913 at 4657.234 kb on + strand, within Psyr_3913 at 4657.235 kb on - strand, within Psyr_3913 at 4657.235 kb on - strand, within Psyr_3913 at 4657.412 kb on + strand, within Psyr_3913 at 4657.413 kb on - strand, within Psyr_3913 at 4657.413 kb on - strand, within Psyr_3913 at 4657.413 kb on - strand, within Psyr_3913 at 4657.778 kb on + strand at 4657.848 kb on - strand at 4657.869 kb on - strand at 4657.910 kb on - strand at 4657.910 kb on - strand at 4657.910 kb on - strand at 4657.940 kb on + strand, within Psyr_3914 at 4657.941 kb on - strand, within Psyr_3914 at 4657.941 kb on - strand, within Psyr_3914 at 4657.941 kb on - strand, within Psyr_3914 at 4658.024 kb on + strand, within Psyr_3914 at 4658.024 kb on + strand, within Psyr_3914 at 4658.132 kb on + strand, within Psyr_3914 at 4658.132 kb on + strand, within Psyr_3914 at 4658.133 kb on - strand, within Psyr_3914 at 4658.133 kb on - strand, within Psyr_3914 at 4658.133 kb on - strand, within Psyr_3914 at 4658.219 kb on + strand, within Psyr_3914 at 4658.219 kb on + strand, within Psyr_3914 at 4658.219 kb on + strand, within Psyr_3914 at 4658.219 kb on + strand, within Psyr_3914 at 4658.219 kb on + strand, within Psyr_3914 at 4658.219 kb on + strand, within Psyr_3914 at 4658.220 kb on - strand, within Psyr_3914 at 4658.220 kb on - strand, within Psyr_3914 at 4658.220 kb on - strand, within Psyr_3914 at 4658.220 kb on - strand, within Psyr_3914 at 4658.220 kb on - strand, within Psyr_3914 at 4658.220 kb on - strand, within Psyr_3914 at 4658.220 kb on - strand, within Psyr_3914 at 4658.220 kb on - strand, within Psyr_3914 at 4658.224 kb on - strand, within Psyr_3914 at 4658.289 kb on + strand, within Psyr_3914 at 4658.289 kb on + strand, within Psyr_3914 at 4658.289 kb on + strand, within Psyr_3914 at 4658.289 kb on + strand, within Psyr_3914 at 4658.290 kb on - strand, within Psyr_3914 at 4658.290 kb on - strand, within Psyr_3914 at 4658.318 kb on + strand, within Psyr_3914 at 4658.530 kb on + strand at 4658.548 kb on + strand at 4658.549 kb on - strand at 4658.549 kb on - strand at 4658.584 kb on - strand at 4658.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 4,655,605 + Psyr_3912 0.63 -0.1 4,655,605 + Psyr_3912 0.63 +0.5 4,655,605 + Psyr_3912 0.63 +0.6 4,655,606 - Psyr_3912 0.63 +0.9 4,656,031 + Psyr_3912 0.85 -0.6 4,656,032 - Psyr_3912 0.85 +0.9 4,656,076 + Psyr_3912 0.88 +0.2 4,656,326 + +0.1 4,656,371 + +0.1 4,656,371 + -1.7 4,656,371 + +0.3 4,656,371 + -1.7 4,656,371 + -0.4 4,656,371 + -0.7 4,656,371 + +2.3 4,656,371 + +0.0 4,656,371 + +0.5 4,656,371 + +0.9 4,656,372 - -0.6 4,656,372 - -0.0 4,656,372 - +0.3 4,656,372 - +0.1 4,656,372 - +0.1 4,656,372 - +0.3 4,656,372 - -0.4 4,656,372 - -0.1 4,656,372 - -1.4 4,656,372 - -0.3 4,656,372 - -0.9 4,656,372 - +0.5 4,656,372 - -0.9 4,656,372 - -1.6 4,656,372 - +0.7 4,656,372 - -0.9 4,656,453 + Psyr_3913 0.10 +0.2 4,656,454 - Psyr_3913 0.10 -1.5 4,656,623 - Psyr_3913 0.23 +0.6 4,656,833 + Psyr_3913 0.39 -2.1 4,656,834 - Psyr_3913 0.39 +1.5 4,657,172 + Psyr_3913 0.64 -0.9 4,657,234 + Psyr_3913 0.69 -1.5 4,657,234 + Psyr_3913 0.69 +0.9 4,657,235 - Psyr_3913 0.69 -0.8 4,657,235 - Psyr_3913 0.69 -0.3 4,657,412 + Psyr_3913 0.82 -0.5 4,657,413 - Psyr_3913 0.82 -0.5 4,657,413 - Psyr_3913 0.82 -1.3 4,657,413 - Psyr_3913 0.82 -0.3 4,657,778 + +0.2 4,657,848 - -0.4 4,657,869 - +0.4 4,657,910 - -0.1 4,657,910 - -1.9 4,657,910 - -0.5 4,657,940 + Psyr_3914 0.11 +0.5 4,657,941 - Psyr_3914 0.11 +0.3 4,657,941 - Psyr_3914 0.11 -1.0 4,657,941 - Psyr_3914 0.11 +2.5 4,658,024 + Psyr_3914 0.24 +1.5 4,658,024 + Psyr_3914 0.24 +1.2 4,658,132 + Psyr_3914 0.41 -0.2 4,658,132 + Psyr_3914 0.41 -1.0 4,658,133 - Psyr_3914 0.41 -1.4 4,658,133 - Psyr_3914 0.41 -1.1 4,658,133 - Psyr_3914 0.41 -0.7 4,658,219 + Psyr_3914 0.54 +0.3 4,658,219 + Psyr_3914 0.54 -0.4 4,658,219 + Psyr_3914 0.54 +0.3 4,658,219 + Psyr_3914 0.54 -0.2 4,658,219 + Psyr_3914 0.54 -0.5 4,658,219 + Psyr_3914 0.54 +0.7 4,658,220 - Psyr_3914 0.54 -0.0 4,658,220 - Psyr_3914 0.54 +0.9 4,658,220 - Psyr_3914 0.54 -0.5 4,658,220 - Psyr_3914 0.54 +0.8 4,658,220 - Psyr_3914 0.54 -0.1 4,658,220 - Psyr_3914 0.54 +2.0 4,658,220 - Psyr_3914 0.54 -0.1 4,658,220 - Psyr_3914 0.54 -1.2 4,658,224 - Psyr_3914 0.55 -0.3 4,658,289 + Psyr_3914 0.65 -0.9 4,658,289 + Psyr_3914 0.65 -0.5 4,658,289 + Psyr_3914 0.65 -1.5 4,658,289 + Psyr_3914 0.65 +0.6 4,658,290 - Psyr_3914 0.65 +0.6 4,658,290 - Psyr_3914 0.65 -1.5 4,658,318 + Psyr_3914 0.70 -0.2 4,658,530 + +0.3 4,658,548 + +0.9 4,658,549 - +0.6 4,658,549 - +1.7 4,658,584 - +0.7 4,658,584 - -2.0
Or see this region's nucleotide sequence