Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3910

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3908 and Psyr_3909 are separated by 128 nucleotidesPsyr_3909 and Psyr_3910 are separated by 0 nucleotidesPsyr_3910 and Psyr_3911 overlap by 4 nucleotidesPsyr_3911 and Psyr_3912 are separated by 60 nucleotides Psyr_3908: Psyr_3908 - L-aspartate-binding protein / L-glutamate-binding protein, at 4,651,067 to 4,652,068 _3908 Psyr_3909: Psyr_3909 - L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein, at 4,652,197 to 4,652,943 _3909 Psyr_3910: Psyr_3910 - L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein, at 4,652,944 to 4,653,609 _3910 Psyr_3911: Psyr_3911 - L-aspartate ABC transporter ATP-binding protein / L-glutamate ABC transporter ATP-binding protein, at 4,653,606 to 4,654,340 _3911 Psyr_3912: Psyr_3912 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,654,401 to 4,656,308 _3912 Position (kb) 4652 4653 4654Strain fitness (log2 ratio) -2 -1 0 1 2at 4651.944 kb on - strand, within Psyr_3908at 4651.944 kb on - strand, within Psyr_3908at 4651.944 kb on - strand, within Psyr_3908at 4651.944 kb on - strand, within Psyr_3908at 4652.167 kb on - strandat 4652.177 kb on - strandat 4652.203 kb on + strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.222 kb on + strandat 4652.223 kb on - strandat 4652.257 kb on + strandat 4652.257 kb on + strandat 4652.257 kb on + strandat 4652.258 kb on - strandat 4652.258 kb on - strandat 4652.258 kb on - strandat 4652.258 kb on - strandat 4652.306 kb on + strand, within Psyr_3909at 4652.306 kb on + strand, within Psyr_3909at 4652.306 kb on + strand, within Psyr_3909at 4652.306 kb on + strand, within Psyr_3909at 4652.307 kb on - strand, within Psyr_3909at 4652.307 kb on - strand, within Psyr_3909at 4652.307 kb on - strand, within Psyr_3909at 4652.307 kb on - strand, within Psyr_3909at 4652.397 kb on - strand, within Psyr_3909at 4652.397 kb on - strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.449 kb on + strand, within Psyr_3909at 4652.449 kb on + strand, within Psyr_3909at 4652.450 kb on - strand, within Psyr_3909at 4652.494 kb on + strand, within Psyr_3909at 4652.494 kb on + strand, within Psyr_3909at 4652.538 kb on - strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.852 kb on - strand, within Psyr_3909at 4652.852 kb on - strand, within Psyr_3909at 4652.852 kb on - strand, within Psyr_3909at 4652.852 kb on - strand, within Psyr_3909at 4652.941 kb on + strandat 4652.941 kb on + strandat 4652.942 kb on - strandat 4653.110 kb on - strand, within Psyr_3910at 4653.118 kb on + strand, within Psyr_3910at 4653.118 kb on + strand, within Psyr_3910at 4653.118 kb on + strand, within Psyr_3910at 4653.119 kb on - strand, within Psyr_3910at 4653.160 kb on + strand, within Psyr_3910at 4653.160 kb on + strand, within Psyr_3910at 4653.160 kb on + strand, within Psyr_3910at 4653.161 kb on - strand, within Psyr_3910at 4653.161 kb on - strand, within Psyr_3910at 4653.262 kb on + strand, within Psyr_3910at 4653.262 kb on + strand, within Psyr_3910at 4653.262 kb on + strand, within Psyr_3910at 4653.262 kb on + strand, within Psyr_3910at 4653.262 kb on + strand, within Psyr_3910at 4653.343 kb on + strand, within Psyr_3910at 4653.344 kb on - strand, within Psyr_3910at 4653.344 kb on - strand, within Psyr_3910at 4653.344 kb on - strand, within Psyr_3910at 4653.344 kb on - strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.448 kb on + strand, within Psyr_3910at 4653.449 kb on - strand, within Psyr_3910at 4653.449 kb on - strand, within Psyr_3910at 4653.449 kb on - strand, within Psyr_3910at 4653.449 kb on - strand, within Psyr_3910at 4653.544 kb on + strandat 4653.544 kb on + strandat 4653.544 kb on + strandat 4653.545 kb on - strandat 4653.606 kb on - strandat 4653.653 kb on - strandat 4653.653 kb on - strandat 4654.338 kb on + strandat 4654.339 kb on - strandat 4654.346 kb on - strandat 4654.346 kb on - strandat 4654.518 kb on + strandat 4654.518 kb on + strandat 4654.518 kb on + strandat 4654.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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4,651,944 - Psyr_3908 0.88 +1.5
4,651,944 - Psyr_3908 0.88 +0.6
4,651,944 - Psyr_3908 0.88 -0.3
4,651,944 - Psyr_3908 0.88 -0.6
4,652,167 - +0.3
4,652,177 - -1.4
4,652,203 + +0.3
4,652,204 - +0.9
4,652,204 - +0.2
4,652,204 - -1.0
4,652,204 - +0.4
4,652,204 - -0.4
4,652,222 + +0.5
4,652,223 - -0.5
4,652,257 + +0.2
4,652,257 + -0.4
4,652,257 + -0.1
4,652,258 - -0.7
4,652,258 - +1.2
4,652,258 - -1.7
4,652,258 - +1.1
4,652,306 + Psyr_3909 0.15 -0.9
4,652,306 + Psyr_3909 0.15 +0.9
4,652,306 + Psyr_3909 0.15 -1.4
4,652,306 + Psyr_3909 0.15 -0.6
4,652,307 - Psyr_3909 0.15 +1.3
4,652,307 - Psyr_3909 0.15 +0.2
4,652,307 - Psyr_3909 0.15 -0.6
4,652,307 - Psyr_3909 0.15 -0.1
4,652,397 - Psyr_3909 0.27 -0.3
4,652,397 - Psyr_3909 0.27 +1.9
4,652,398 + Psyr_3909 0.27 +0.0
4,652,398 + Psyr_3909 0.27 +0.9
4,652,398 + Psyr_3909 0.27 -2.7
4,652,398 + Psyr_3909 0.27 -0.7
4,652,398 + Psyr_3909 0.27 -1.8
4,652,398 + Psyr_3909 0.27 -1.4
4,652,398 + Psyr_3909 0.27 +1.5
4,652,398 + Psyr_3909 0.27 -0.7
4,652,399 - Psyr_3909 0.27 +0.8
4,652,399 - Psyr_3909 0.27 +1.1
4,652,399 - Psyr_3909 0.27 +0.3
4,652,399 - Psyr_3909 0.27 +0.6
4,652,399 - Psyr_3909 0.27 +0.3
4,652,399 - Psyr_3909 0.27 -0.4
4,652,399 - Psyr_3909 0.27 +0.2
4,652,399 - Psyr_3909 0.27 -0.2
4,652,449 + Psyr_3909 0.34 -0.3
4,652,449 + Psyr_3909 0.34 +0.1
4,652,450 - Psyr_3909 0.34 +0.6
4,652,494 + Psyr_3909 0.40 +0.7
4,652,494 + Psyr_3909 0.40 -0.0
4,652,538 - Psyr_3909 0.46 +0.4
4,652,851 + Psyr_3909 0.88 -0.8
4,652,851 + Psyr_3909 0.88 -0.6
4,652,851 + Psyr_3909 0.88 +0.2
4,652,851 + Psyr_3909 0.88 +0.1
4,652,851 + Psyr_3909 0.88 -0.0
4,652,851 + Psyr_3909 0.88 -0.7
4,652,851 + Psyr_3909 0.88 -0.7
4,652,851 + Psyr_3909 0.88 -1.7
4,652,852 - Psyr_3909 0.88 -0.9
4,652,852 - Psyr_3909 0.88 -0.3
4,652,852 - Psyr_3909 0.88 -1.2
4,652,852 - Psyr_3909 0.88 -0.7
4,652,941 + +0.0
4,652,941 + -0.3
4,652,942 - -0.4
4,653,110 - Psyr_3910 0.25 +0.6
4,653,118 + Psyr_3910 0.26 -2.7
4,653,118 + Psyr_3910 0.26 -0.7
4,653,118 + Psyr_3910 0.26 +1.5
4,653,119 - Psyr_3910 0.26 -2.4
4,653,160 + Psyr_3910 0.32 -1.1
4,653,160 + Psyr_3910 0.32 -1.4
4,653,160 + Psyr_3910 0.32 +0.2
4,653,161 - Psyr_3910 0.33 +0.5
4,653,161 - Psyr_3910 0.33 -2.3
4,653,262 + Psyr_3910 0.48 -1.6
4,653,262 + Psyr_3910 0.48 +0.1
4,653,262 + Psyr_3910 0.48 -0.7
4,653,262 + Psyr_3910 0.48 +0.7
4,653,262 + Psyr_3910 0.48 +0.2
4,653,343 + Psyr_3910 0.60 +0.5
4,653,344 - Psyr_3910 0.60 +0.2
4,653,344 - Psyr_3910 0.60 +0.2
4,653,344 - Psyr_3910 0.60 -0.8
4,653,344 - Psyr_3910 0.60 +0.2
4,653,448 + Psyr_3910 0.76 -0.1
4,653,448 + Psyr_3910 0.76 +0.1
4,653,448 + Psyr_3910 0.76 +2.2
4,653,448 + Psyr_3910 0.76 -1.4
4,653,448 + Psyr_3910 0.76 -0.1
4,653,448 + Psyr_3910 0.76 -2.1
4,653,449 - Psyr_3910 0.76 +0.2
4,653,449 - Psyr_3910 0.76 +1.5
4,653,449 - Psyr_3910 0.76 +1.4
4,653,449 - Psyr_3910 0.76 +0.3
4,653,544 + -0.1
4,653,544 + +0.5
4,653,544 + -0.6
4,653,545 - +0.9
4,653,606 - +1.3
4,653,653 - -1.1
4,653,653 - -0.9
4,654,338 + -0.3
4,654,339 - -0.8
4,654,346 - +0.1
4,654,346 - -0.1
4,654,518 + -0.2
4,654,518 + +1.7
4,654,518 + -0.1
4,654,519 - +1.9

Or see this region's nucleotide sequence