Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3680 and Psyr_3681 are separated by 25 nucleotides Psyr_3681 and Psyr_3682 are separated by 424 nucleotides
Psyr_3680: Psyr_3680 - hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase, at 4,365,985 to 4,367,280
_3680
Psyr_3681: Psyr_3681 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 4,367,306 to 4,367,917
_3681
Psyr_3682: Psyr_3682 - L-sorbosone dehydrogenase, at 4,368,342 to 4,369,670
_3682
Position (kb) 4367
4368 Strain fitness (log2 ratio) -1
0
1
2
3 at 4366.427 kb on + strand, within Psyr_3680 at 4366.428 kb on - strand, within Psyr_3680 at 4366.428 kb on - strand, within Psyr_3680 at 4366.817 kb on - strand, within Psyr_3680 at 4367.429 kb on + strand, within Psyr_3681 at 4367.429 kb on + strand, within Psyr_3681 at 4367.430 kb on - strand, within Psyr_3681 at 4367.430 kb on - strand, within Psyr_3681 at 4367.430 kb on - strand, within Psyr_3681 at 4368.116 kb on + strand at 4368.116 kb on + strand at 4368.117 kb on - strand at 4368.281 kb on + strand at 4368.302 kb on - strand at 4368.309 kb on - strand at 4368.309 kb on - strand at 4368.364 kb on - strand at 4368.509 kb on - strand, within Psyr_3682 at 4368.597 kb on + strand, within Psyr_3682 at 4368.597 kb on + strand, within Psyr_3682 at 4368.597 kb on + strand, within Psyr_3682 at 4368.597 kb on + strand, within Psyr_3682 at 4368.597 kb on + strand, within Psyr_3682 at 4368.597 kb on + strand, within Psyr_3682 at 4368.597 kb on + strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.598 kb on - strand, within Psyr_3682 at 4368.843 kb on + strand, within Psyr_3682 at 4368.843 kb on + strand, within Psyr_3682 at 4368.843 kb on + strand, within Psyr_3682 at 4368.843 kb on + strand, within Psyr_3682 at 4368.843 kb on + strand, within Psyr_3682 at 4368.843 kb on + strand, within Psyr_3682 at 4368.843 kb on + strand, within Psyr_3682 at 4368.844 kb on - strand, within Psyr_3682 at 4368.844 kb on - strand, within Psyr_3682 at 4368.844 kb on - strand, within Psyr_3682 at 4368.844 kb on - strand, within Psyr_3682 at 4368.844 kb on - strand, within Psyr_3682 at 4368.844 kb on - strand, within Psyr_3682 at 4368.844 kb on - strand, within Psyr_3682
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 4,366,427 + Psyr_3680 0.34 -1.4 4,366,428 - Psyr_3680 0.34 -1.0 4,366,428 - Psyr_3680 0.34 +0.4 4,366,817 - Psyr_3680 0.64 -0.5 4,367,429 + Psyr_3681 0.20 -0.7 4,367,429 + Psyr_3681 0.20 -0.7 4,367,430 - Psyr_3681 0.20 -1.7 4,367,430 - Psyr_3681 0.20 +2.2 4,367,430 - Psyr_3681 0.20 -1.4 4,368,116 + +0.9 4,368,116 + -0.2 4,368,117 - +0.9 4,368,281 + -1.3 4,368,302 - +3.2 4,368,309 - +0.9 4,368,309 - +0.7 4,368,364 - +0.6 4,368,509 - Psyr_3682 0.13 +0.7 4,368,597 + Psyr_3682 0.19 +0.9 4,368,597 + Psyr_3682 0.19 +1.4 4,368,597 + Psyr_3682 0.19 +1.4 4,368,597 + Psyr_3682 0.19 -0.7 4,368,597 + Psyr_3682 0.19 +2.5 4,368,597 + Psyr_3682 0.19 +0.8 4,368,597 + Psyr_3682 0.19 +0.5 4,368,598 - Psyr_3682 0.19 +0.5 4,368,598 - Psyr_3682 0.19 -0.1 4,368,598 - Psyr_3682 0.19 +0.3 4,368,598 - Psyr_3682 0.19 -0.7 4,368,598 - Psyr_3682 0.19 +0.1 4,368,598 - Psyr_3682 0.19 +0.2 4,368,598 - Psyr_3682 0.19 +0.5 4,368,598 - Psyr_3682 0.19 -0.7 4,368,598 - Psyr_3682 0.19 +0.3 4,368,598 - Psyr_3682 0.19 +1.8 4,368,843 + Psyr_3682 0.38 +0.3 4,368,843 + Psyr_3682 0.38 -0.8 4,368,843 + Psyr_3682 0.38 -1.0 4,368,843 + Psyr_3682 0.38 -0.3 4,368,843 + Psyr_3682 0.38 -0.1 4,368,843 + Psyr_3682 0.38 -0.0 4,368,843 + Psyr_3682 0.38 +2.5 4,368,844 - Psyr_3682 0.38 -0.6 4,368,844 - Psyr_3682 0.38 +1.3 4,368,844 - Psyr_3682 0.38 +0.3 4,368,844 - Psyr_3682 0.38 +1.4 4,368,844 - Psyr_3682 0.38 +0.1 4,368,844 - Psyr_3682 0.38 -0.5 4,368,844 - Psyr_3682 0.38 +0.4
Or see this region's nucleotide sequence