Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3605

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3604 and Psyr_3605 are separated by 6 nucleotidesPsyr_3605 and Psyr_3606 are separated by 38 nucleotides Psyr_3604: Psyr_3604 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 4,285,891 to 4,287,072 _3604 Psyr_3605: Psyr_3605 - Trimethylamine-N-oxide reductase (cytochrome c), at 4,287,079 to 4,289,349 _3605 Psyr_3606: Psyr_3606 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,289,388 to 4,290,359 _3606 Position (kb) 4287 4288 4289 4290Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4286.179 kb on + strand, within Psyr_3604at 4286.180 kb on - strand, within Psyr_3604at 4286.180 kb on - strand, within Psyr_3604at 4286.875 kb on + strand, within Psyr_3604at 4286.876 kb on - strand, within Psyr_3604at 4287.071 kb on - strandat 4287.071 kb on - strandat 4287.071 kb on - strandat 4287.452 kb on + strand, within Psyr_3605at 4287.453 kb on - strand, within Psyr_3605at 4287.569 kb on + strand, within Psyr_3605at 4287.691 kb on + strand, within Psyr_3605at 4287.691 kb on + strand, within Psyr_3605at 4287.691 kb on + strand, within Psyr_3605at 4287.692 kb on - strand, within Psyr_3605at 4287.692 kb on - strand, within Psyr_3605at 4287.692 kb on - strand, within Psyr_3605at 4287.776 kb on + strand, within Psyr_3605at 4287.777 kb on - strand, within Psyr_3605at 4287.777 kb on - strand, within Psyr_3605at 4287.780 kb on + strand, within Psyr_3605at 4287.781 kb on - strand, within Psyr_3605at 4287.781 kb on - strand, within Psyr_3605at 4287.781 kb on - strand, within Psyr_3605at 4288.109 kb on + strand, within Psyr_3605at 4288.110 kb on - strand, within Psyr_3605at 4288.110 kb on - strand, within Psyr_3605at 4288.152 kb on - strand, within Psyr_3605at 4288.165 kb on - strand, within Psyr_3605at 4288.382 kb on - strand, within Psyr_3605at 4288.383 kb on + strand, within Psyr_3605at 4288.383 kb on + strand, within Psyr_3605at 4288.383 kb on + strand, within Psyr_3605at 4288.383 kb on + strand, within Psyr_3605at 4288.383 kb on + strand, within Psyr_3605at 4288.383 kb on + strand, within Psyr_3605at 4288.384 kb on - strand, within Psyr_3605at 4288.384 kb on - strand, within Psyr_3605at 4288.384 kb on - strand, within Psyr_3605at 4288.384 kb on - strand, within Psyr_3605at 4288.384 kb on - strand, within Psyr_3605at 4288.401 kb on - strand, within Psyr_3605at 4288.533 kb on - strand, within Psyr_3605at 4288.550 kb on + strand, within Psyr_3605at 4288.561 kb on - strand, within Psyr_3605at 4288.636 kb on - strand, within Psyr_3605at 4288.669 kb on - strand, within Psyr_3605at 4288.863 kb on + strand, within Psyr_3605at 4288.863 kb on + strand, within Psyr_3605at 4288.863 kb on + strand, within Psyr_3605at 4288.864 kb on - strand, within Psyr_3605at 4288.864 kb on - strand, within Psyr_3605at 4288.934 kb on + strand, within Psyr_3605at 4288.934 kb on + strand, within Psyr_3605at 4288.935 kb on - strand, within Psyr_3605at 4288.955 kb on + strand, within Psyr_3605at 4288.972 kb on - strand, within Psyr_3605at 4289.046 kb on + strand, within Psyr_3605at 4289.221 kb on - strandat 4289.221 kb on - strandat 4289.394 kb on + strandat 4289.394 kb on + strandat 4289.806 kb on + strand, within Psyr_3606at 4289.806 kb on + strand, within Psyr_3606at 4289.807 kb on - strand, within Psyr_3606at 4289.820 kb on - strand, within Psyr_3606at 4290.126 kb on - strand, within Psyr_3606at 4290.196 kb on + strand, within Psyr_3606at 4290.196 kb on + strand, within Psyr_3606at 4290.197 kb on - strand, within Psyr_3606at 4290.197 kb on - strand, within Psyr_3606at 4290.201 kb on + strand, within Psyr_3606at 4290.202 kb on - strand, within Psyr_3606at 4290.202 kb on - strand, within Psyr_3606at 4290.202 kb on - strand, within Psyr_3606at 4290.202 kb on - strand, within Psyr_3606at 4290.248 kb on - strand, within Psyr_3606

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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4,286,179 + Psyr_3604 0.24 -0.1
4,286,180 - Psyr_3604 0.24 -1.6
4,286,180 - Psyr_3604 0.24 +0.9
4,286,875 + Psyr_3604 0.83 +0.4
4,286,876 - Psyr_3604 0.83 +0.7
4,287,071 - -0.1
4,287,071 - +1.5
4,287,071 - +2.5
4,287,452 + Psyr_3605 0.16 -0.5
4,287,453 - Psyr_3605 0.16 +0.3
4,287,569 + Psyr_3605 0.22 -0.1
4,287,691 + Psyr_3605 0.27 +1.3
4,287,691 + Psyr_3605 0.27 -0.9
4,287,691 + Psyr_3605 0.27 +1.1
4,287,692 - Psyr_3605 0.27 -0.1
4,287,692 - Psyr_3605 0.27 +0.3
4,287,692 - Psyr_3605 0.27 -0.5
4,287,776 + Psyr_3605 0.31 -0.9
4,287,777 - Psyr_3605 0.31 -1.4
4,287,777 - Psyr_3605 0.31 +1.1
4,287,780 + Psyr_3605 0.31 -0.2
4,287,781 - Psyr_3605 0.31 +2.9
4,287,781 - Psyr_3605 0.31 -0.6
4,287,781 - Psyr_3605 0.31 -0.9
4,288,109 + Psyr_3605 0.45 -1.0
4,288,110 - Psyr_3605 0.45 -0.4
4,288,110 - Psyr_3605 0.45 -0.8
4,288,152 - Psyr_3605 0.47 +0.7
4,288,165 - Psyr_3605 0.48 -0.1
4,288,382 - Psyr_3605 0.57 -1.0
4,288,383 + Psyr_3605 0.57 -0.9
4,288,383 + Psyr_3605 0.57 -0.3
4,288,383 + Psyr_3605 0.57 +0.2
4,288,383 + Psyr_3605 0.57 -0.4
4,288,383 + Psyr_3605 0.57 +0.9
4,288,383 + Psyr_3605 0.57 -0.7
4,288,384 - Psyr_3605 0.57 -1.2
4,288,384 - Psyr_3605 0.57 -0.7
4,288,384 - Psyr_3605 0.57 +0.2
4,288,384 - Psyr_3605 0.57 +0.8
4,288,384 - Psyr_3605 0.57 -1.0
4,288,401 - Psyr_3605 0.58 +0.5
4,288,533 - Psyr_3605 0.64 +0.5
4,288,550 + Psyr_3605 0.65 -0.2
4,288,561 - Psyr_3605 0.65 +0.3
4,288,636 - Psyr_3605 0.69 +0.3
4,288,669 - Psyr_3605 0.70 -1.2
4,288,863 + Psyr_3605 0.79 -0.2
4,288,863 + Psyr_3605 0.79 -0.3
4,288,863 + Psyr_3605 0.79 -0.5
4,288,864 - Psyr_3605 0.79 +0.9
4,288,864 - Psyr_3605 0.79 -1.1
4,288,934 + Psyr_3605 0.82 -1.0
4,288,934 + Psyr_3605 0.82 -1.8
4,288,935 - Psyr_3605 0.82 -0.6
4,288,955 + Psyr_3605 0.83 -0.5
4,288,972 - Psyr_3605 0.83 +0.1
4,289,046 + Psyr_3605 0.87 -0.9
4,289,221 - -0.1
4,289,221 - -1.5
4,289,394 + -1.8
4,289,394 + -0.6
4,289,806 + Psyr_3606 0.43 +1.9
4,289,806 + Psyr_3606 0.43 -2.2
4,289,807 - Psyr_3606 0.43 +0.3
4,289,820 - Psyr_3606 0.44 +0.1
4,290,126 - Psyr_3606 0.76 +0.2
4,290,196 + Psyr_3606 0.83 +0.6
4,290,196 + Psyr_3606 0.83 +0.8
4,290,197 - Psyr_3606 0.83 +0.1
4,290,197 - Psyr_3606 0.83 +0.6
4,290,201 + Psyr_3606 0.84 +0.8
4,290,202 - Psyr_3606 0.84 -0.8
4,290,202 - Psyr_3606 0.84 -0.7
4,290,202 - Psyr_3606 0.84 +0.1
4,290,202 - Psyr_3606 0.84 -0.0
4,290,248 - Psyr_3606 0.88 +0.3

Or see this region's nucleotide sequence