Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3508

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3506 and Psyr_3507 are separated by 10 nucleotidesPsyr_3507 and Psyr_3508 overlap by 4 nucleotidesPsyr_3508 and Psyr_3509 are separated by 38 nucleotidesPsyr_3509 and Psyr_3510 overlap by 1 nucleotides Psyr_3506: Psyr_3506 - Sulfatase, at 4,180,950 to 4,182,983 _3506 Psyr_3507: Psyr_3507 - membrane protein, putative, at 4,182,994 to 4,183,614 _3507 Psyr_3508: Psyr_3508 - Glycosyl hydrolase, BNR repeat protein, at 4,183,611 to 4,184,909 _3508 Psyr_3509: Psyr_3509 - Cytochrome B561, bacterial, at 4,184,948 to 4,185,493 _3509 Psyr_3510: Psyr_3510 - conserved hypothetical protein, at 4,185,493 to 4,185,756 _3510 Position (kb) 4183 4184 4185Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4182.641 kb on - strand, within Psyr_3506at 4182.646 kb on + strand, within Psyr_3506at 4182.646 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.667 kb on + strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.668 kb on - strand, within Psyr_3506at 4182.889 kb on + strandat 4182.890 kb on - strandat 4182.996 kb on - strandat 4183.091 kb on + strand, within Psyr_3507at 4183.091 kb on + strand, within Psyr_3507at 4183.091 kb on + strand, within Psyr_3507at 4183.207 kb on - strand, within Psyr_3507at 4183.286 kb on + strand, within Psyr_3507at 4183.286 kb on + strand, within Psyr_3507at 4183.286 kb on + strand, within Psyr_3507at 4183.460 kb on + strand, within Psyr_3507at 4183.461 kb on - strand, within Psyr_3507at 4183.614 kb on + strandat 4183.614 kb on + strandat 4183.670 kb on + strandat 4183.681 kb on + strandat 4183.682 kb on - strandat 4183.682 kb on - strandat 4183.694 kb on - strandat 4183.694 kb on - strandat 4183.720 kb on + strandat 4183.727 kb on - strandat 4183.727 kb on - strandat 4183.855 kb on + strand, within Psyr_3508at 4183.855 kb on + strand, within Psyr_3508at 4184.248 kb on + strand, within Psyr_3508at 4184.255 kb on - strand, within Psyr_3508at 4184.255 kb on - strand, within Psyr_3508at 4184.255 kb on - strand, within Psyr_3508at 4184.284 kb on + strand, within Psyr_3508at 4184.334 kb on + strand, within Psyr_3508at 4184.343 kb on - strand, within Psyr_3508at 4184.464 kb on + strand, within Psyr_3508at 4184.464 kb on + strand, within Psyr_3508at 4184.464 kb on + strand, within Psyr_3508at 4184.465 kb on - strand, within Psyr_3508at 4184.465 kb on - strand, within Psyr_3508at 4184.527 kb on + strand, within Psyr_3508at 4184.527 kb on + strand, within Psyr_3508at 4184.527 kb on + strand, within Psyr_3508at 4184.527 kb on + strand, within Psyr_3508at 4184.527 kb on + strand, within Psyr_3508at 4184.528 kb on - strand, within Psyr_3508at 4184.528 kb on - strand, within Psyr_3508at 4184.528 kb on - strand, within Psyr_3508at 4184.619 kb on + strand, within Psyr_3508at 4184.620 kb on - strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.747 kb on + strand, within Psyr_3508at 4184.748 kb on - strand, within Psyr_3508at 4184.748 kb on - strand, within Psyr_3508at 4184.748 kb on - strand, within Psyr_3508at 4184.748 kb on - strand, within Psyr_3508at 4184.748 kb on - strand, within Psyr_3508at 4184.748 kb on - strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.749 kb on + strand, within Psyr_3508at 4184.750 kb on - strand, within Psyr_3508at 4184.750 kb on - strand, within Psyr_3508at 4184.750 kb on - strand, within Psyr_3508at 4184.750 kb on - strand, within Psyr_3508at 4184.750 kb on - strand, within Psyr_3508at 4184.750 kb on - strand, within Psyr_3508at 4184.750 kb on - strand, within Psyr_3508at 4184.814 kb on - strandat 4184.814 kb on - strandat 4184.814 kb on - strandat 4184.900 kb on + strandat 4184.900 kb on + strandat 4184.900 kb on + strandat 4184.900 kb on + strandat 4184.900 kb on + strandat 4184.925 kb on + strandat 4184.926 kb on - strandat 4185.017 kb on + strand, within Psyr_3509at 4185.017 kb on + strand, within Psyr_3509at 4185.017 kb on + strand, within Psyr_3509at 4185.018 kb on - strand, within Psyr_3509at 4185.188 kb on + strand, within Psyr_3509at 4185.188 kb on + strand, within Psyr_3509at 4185.188 kb on + strand, within Psyr_3509at 4185.189 kb on - strand, within Psyr_3509at 4185.189 kb on - strand, within Psyr_3509at 4185.266 kb on - strand, within Psyr_3509at 4185.363 kb on + strand, within Psyr_3509at 4185.366 kb on + strand, within Psyr_3509at 4185.367 kb on - strand, within Psyr_3509at 4185.380 kb on - strand, within Psyr_3509at 4185.380 kb on - strand, within Psyr_3509at 4185.380 kb on - strand, within Psyr_3509at 4185.411 kb on + strand, within Psyr_3509at 4185.411 kb on + strand, within Psyr_3509at 4185.412 kb on - strand, within Psyr_3509at 4185.494 kb on + strandat 4185.494 kb on + strandat 4185.494 kb on + strandat 4185.494 kb on + strandat 4185.540 kb on - strand, within Psyr_3510at 4185.777 kb on + strandat 4185.788 kb on + strandat 4185.807 kb on + strandat 4185.818 kb on + strandat 4185.819 kb on - strandat 4185.821 kb on + strandat 4185.821 kb on + strandat 4185.821 kb on + strandat 4185.822 kb on - strandat 4185.822 kb on - strandat 4185.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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4,182,641 - Psyr_3506 0.83 +0.6
4,182,646 + Psyr_3506 0.83 +1.1
4,182,646 + Psyr_3506 0.83 -0.6
4,182,667 + Psyr_3506 0.84 +0.1
4,182,667 + Psyr_3506 0.84 -2.5
4,182,667 + Psyr_3506 0.84 +0.7
4,182,667 + Psyr_3506 0.84 -0.9
4,182,667 + Psyr_3506 0.84 +0.1
4,182,667 + Psyr_3506 0.84 -1.1
4,182,667 + Psyr_3506 0.84 -0.1
4,182,667 + Psyr_3506 0.84 +0.1
4,182,667 + Psyr_3506 0.84 +1.4
4,182,668 - Psyr_3506 0.84 -0.1
4,182,668 - Psyr_3506 0.84 -0.1
4,182,668 - Psyr_3506 0.84 +1.4
4,182,668 - Psyr_3506 0.84 -1.6
4,182,668 - Psyr_3506 0.84 +0.2
4,182,668 - Psyr_3506 0.84 +0.0
4,182,668 - Psyr_3506 0.84 -0.9
4,182,668 - Psyr_3506 0.84 -1.6
4,182,668 - Psyr_3506 0.84 -1.4
4,182,668 - Psyr_3506 0.84 +0.1
4,182,889 + -0.1
4,182,890 - -0.8
4,182,996 - +0.2
4,183,091 + Psyr_3507 0.16 -1.7
4,183,091 + Psyr_3507 0.16 -0.1
4,183,091 + Psyr_3507 0.16 -0.9
4,183,207 - Psyr_3507 0.34 -0.9
4,183,286 + Psyr_3507 0.47 +0.3
4,183,286 + Psyr_3507 0.47 -1.1
4,183,286 + Psyr_3507 0.47 -0.6
4,183,460 + Psyr_3507 0.75 -0.4
4,183,461 - Psyr_3507 0.75 +1.0
4,183,614 + +1.4
4,183,614 + +3.2
4,183,670 + +0.5
4,183,681 + +0.3
4,183,682 - -0.6
4,183,682 - -0.4
4,183,694 - +0.2
4,183,694 - -1.5
4,183,720 + -0.2
4,183,727 - -0.3
4,183,727 - +0.1
4,183,855 + Psyr_3508 0.19 -0.6
4,183,855 + Psyr_3508 0.19 -0.5
4,184,248 + Psyr_3508 0.49 +0.9
4,184,255 - Psyr_3508 0.50 +1.2
4,184,255 - Psyr_3508 0.50 -0.9
4,184,255 - Psyr_3508 0.50 +0.2
4,184,284 + Psyr_3508 0.52 -0.1
4,184,334 + Psyr_3508 0.56 -0.5
4,184,343 - Psyr_3508 0.56 -1.2
4,184,464 + Psyr_3508 0.66 +0.4
4,184,464 + Psyr_3508 0.66 +0.8
4,184,464 + Psyr_3508 0.66 -0.8
4,184,465 - Psyr_3508 0.66 +1.0
4,184,465 - Psyr_3508 0.66 +0.4
4,184,527 + Psyr_3508 0.71 +0.9
4,184,527 + Psyr_3508 0.71 -0.2
4,184,527 + Psyr_3508 0.71 +0.0
4,184,527 + Psyr_3508 0.71 +0.9
4,184,527 + Psyr_3508 0.71 +0.0
4,184,528 - Psyr_3508 0.71 +1.2
4,184,528 - Psyr_3508 0.71 -0.7
4,184,528 - Psyr_3508 0.71 -0.8
4,184,619 + Psyr_3508 0.78 +0.8
4,184,620 - Psyr_3508 0.78 -0.0
4,184,747 + Psyr_3508 0.87 -0.1
4,184,747 + Psyr_3508 0.87 +2.4
4,184,747 + Psyr_3508 0.87 +0.5
4,184,747 + Psyr_3508 0.87 +0.1
4,184,747 + Psyr_3508 0.87 +0.4
4,184,747 + Psyr_3508 0.87 -0.3
4,184,747 + Psyr_3508 0.87 -0.2
4,184,747 + Psyr_3508 0.87 -0.4
4,184,747 + Psyr_3508 0.87 +0.4
4,184,747 + Psyr_3508 0.87 +0.4
4,184,747 + Psyr_3508 0.87 +0.9
4,184,748 - Psyr_3508 0.88 +1.3
4,184,748 - Psyr_3508 0.88 +0.4
4,184,748 - Psyr_3508 0.88 +0.5
4,184,748 - Psyr_3508 0.88 +0.9
4,184,748 - Psyr_3508 0.88 +1.8
4,184,748 - Psyr_3508 0.88 -0.7
4,184,749 + Psyr_3508 0.88 +2.2
4,184,749 + Psyr_3508 0.88 -0.7
4,184,749 + Psyr_3508 0.88 +0.9
4,184,749 + Psyr_3508 0.88 +3.9
4,184,749 + Psyr_3508 0.88 +1.7
4,184,749 + Psyr_3508 0.88 +0.6
4,184,749 + Psyr_3508 0.88 +1.8
4,184,749 + Psyr_3508 0.88 +0.1
4,184,749 + Psyr_3508 0.88 +0.1
4,184,749 + Psyr_3508 0.88 -0.1
4,184,749 + Psyr_3508 0.88 +1.3
4,184,750 - Psyr_3508 0.88 +1.1
4,184,750 - Psyr_3508 0.88 -0.5
4,184,750 - Psyr_3508 0.88 +0.1
4,184,750 - Psyr_3508 0.88 -1.1
4,184,750 - Psyr_3508 0.88 -2.1
4,184,750 - Psyr_3508 0.88 +1.1
4,184,750 - Psyr_3508 0.88 +0.7
4,184,814 - -0.4
4,184,814 - +0.3
4,184,814 - -0.7
4,184,900 + -0.3
4,184,900 + -0.1
4,184,900 + -0.7
4,184,900 + +0.4
4,184,900 + +2.1
4,184,925 + -1.6
4,184,926 - +0.4
4,185,017 + Psyr_3509 0.13 +0.2
4,185,017 + Psyr_3509 0.13 +0.9
4,185,017 + Psyr_3509 0.13 -0.9
4,185,018 - Psyr_3509 0.13 +0.2
4,185,188 + Psyr_3509 0.44 +1.1
4,185,188 + Psyr_3509 0.44 +0.9
4,185,188 + Psyr_3509 0.44 -0.0
4,185,189 - Psyr_3509 0.44 +0.1
4,185,189 - Psyr_3509 0.44 -0.1
4,185,266 - Psyr_3509 0.58 -0.0
4,185,363 + Psyr_3509 0.76 -0.5
4,185,366 + Psyr_3509 0.77 -1.4
4,185,367 - Psyr_3509 0.77 -0.6
4,185,380 - Psyr_3509 0.79 -0.1
4,185,380 - Psyr_3509 0.79 +1.0
4,185,380 - Psyr_3509 0.79 +1.9
4,185,411 + Psyr_3509 0.85 +0.4
4,185,411 + Psyr_3509 0.85 -0.4
4,185,412 - Psyr_3509 0.85 +0.7
4,185,494 + +0.1
4,185,494 + +1.3
4,185,494 + +0.2
4,185,494 + -0.3
4,185,540 - Psyr_3510 0.18 -0.4
4,185,777 + -0.4
4,185,788 + +0.3
4,185,807 + -0.5
4,185,818 + -0.8
4,185,819 - +0.9
4,185,821 + +0.9
4,185,821 + -0.8
4,185,821 + -1.5
4,185,822 - -0.7
4,185,822 - -0.2
4,185,822 - +0.3

Or see this region's nucleotide sequence