Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3455

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3454 and Psyr_3455 overlap by 11 nucleotidesPsyr_3455 and Psyr_3456 are separated by 15 nucleotides Psyr_3454: Psyr_3454 - ATPase FliI/YscN, at 4,116,887 to 4,118,245 _3454 Psyr_3455: Psyr_3455 - Flagellar assembly protein FliH, at 4,118,235 to 4,119,053 _3455 Psyr_3456: Psyr_3456 - Flagellar motor switch protein FliG, at 4,119,069 to 4,120,085 _3456 Position (kb) 4118 4119 4120Strain fitness (log2 ratio) -1 0 1 2 3at 4117.290 kb on + strand, within Psyr_3454at 4117.290 kb on + strand, within Psyr_3454at 4117.291 kb on - strand, within Psyr_3454at 4117.300 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.303 kb on + strand, within Psyr_3454at 4117.304 kb on - strand, within Psyr_3454at 4117.304 kb on - strand, within Psyr_3454at 4117.492 kb on - strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.512 kb on + strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4117.513 kb on - strand, within Psyr_3454at 4118.202 kb on + strandat 4118.202 kb on + strandat 4118.202 kb on + strandat 4118.203 kb on - strandat 4118.203 kb on - strandat 4118.203 kb on - strandat 4118.414 kb on + strand, within Psyr_3455at 4118.415 kb on - strand, within Psyr_3455at 4118.565 kb on + strand, within Psyr_3455at 4118.566 kb on - strand, within Psyr_3455at 4118.659 kb on + strand, within Psyr_3455at 4118.659 kb on + strand, within Psyr_3455at 4118.659 kb on + strand, within Psyr_3455at 4118.660 kb on - strand, within Psyr_3455at 4118.660 kb on - strand, within Psyr_3455at 4118.660 kb on - strand, within Psyr_3455at 4118.781 kb on + strand, within Psyr_3455at 4118.781 kb on + strand, within Psyr_3455at 4118.782 kb on - strand, within Psyr_3455at 4119.070 kb on + strandat 4119.070 kb on + strandat 4119.071 kb on - strandat 4119.103 kb on - strandat 4119.125 kb on + strandat 4119.126 kb on - strandat 4119.288 kb on + strand, within Psyr_3456at 4119.306 kb on + strand, within Psyr_3456at 4119.307 kb on - strand, within Psyr_3456at 4119.307 kb on - strand, within Psyr_3456at 4119.307 kb on - strand, within Psyr_3456at 4119.307 kb on - strand, within Psyr_3456at 4119.570 kb on + strand, within Psyr_3456at 4119.571 kb on - strand, within Psyr_3456at 4119.665 kb on - strand, within Psyr_3456at 4119.761 kb on + strand, within Psyr_3456at 4119.762 kb on - strand, within Psyr_3456at 4119.771 kb on + strand, within Psyr_3456at 4119.772 kb on - strand, within Psyr_3456at 4119.772 kb on - strand, within Psyr_3456at 4119.841 kb on + strand, within Psyr_3456at 4119.841 kb on + strand, within Psyr_3456at 4119.841 kb on + strand, within Psyr_3456at 4119.841 kb on + strand, within Psyr_3456at 4119.841 kb on + strand, within Psyr_3456at 4119.841 kb on + strand, within Psyr_3456at 4119.841 kb on + strand, within Psyr_3456at 4119.842 kb on - strand, within Psyr_3456at 4119.842 kb on - strand, within Psyr_3456at 4119.842 kb on - strand, within Psyr_3456at 4119.842 kb on - strand, within Psyr_3456at 4119.842 kb on - strand, within Psyr_3456at 4120.033 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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4,117,290 + Psyr_3454 0.30 -0.7
4,117,290 + Psyr_3454 0.30 +0.5
4,117,291 - Psyr_3454 0.30 +1.5
4,117,300 + Psyr_3454 0.30 -0.3
4,117,303 + Psyr_3454 0.31 +0.5
4,117,303 + Psyr_3454 0.31 +1.7
4,117,303 + Psyr_3454 0.31 -0.2
4,117,303 + Psyr_3454 0.31 -0.4
4,117,303 + Psyr_3454 0.31 +0.6
4,117,303 + Psyr_3454 0.31 -0.3
4,117,304 - Psyr_3454 0.31 -0.4
4,117,304 - Psyr_3454 0.31 +0.5
4,117,492 - Psyr_3454 0.45 +0.4
4,117,512 + Psyr_3454 0.46 +0.2
4,117,512 + Psyr_3454 0.46 +0.6
4,117,512 + Psyr_3454 0.46 -0.3
4,117,512 + Psyr_3454 0.46 +0.1
4,117,513 - Psyr_3454 0.46 +0.1
4,117,513 - Psyr_3454 0.46 +0.6
4,117,513 - Psyr_3454 0.46 -0.2
4,117,513 - Psyr_3454 0.46 -0.3
4,117,513 - Psyr_3454 0.46 +1.6
4,117,513 - Psyr_3454 0.46 -0.2
4,117,513 - Psyr_3454 0.46 -0.0
4,117,513 - Psyr_3454 0.46 -0.5
4,117,513 - Psyr_3454 0.46 +0.8
4,118,202 + +2.4
4,118,202 + +0.2
4,118,202 + +0.2
4,118,203 - -0.6
4,118,203 - -1.1
4,118,203 - -0.2
4,118,414 + Psyr_3455 0.22 -0.4
4,118,415 - Psyr_3455 0.22 +0.9
4,118,565 + Psyr_3455 0.40 +0.6
4,118,566 - Psyr_3455 0.40 +0.3
4,118,659 + Psyr_3455 0.52 +0.1
4,118,659 + Psyr_3455 0.52 +0.7
4,118,659 + Psyr_3455 0.52 -0.5
4,118,660 - Psyr_3455 0.52 +0.4
4,118,660 - Psyr_3455 0.52 +0.1
4,118,660 - Psyr_3455 0.52 +1.4
4,118,781 + Psyr_3455 0.67 +1.2
4,118,781 + Psyr_3455 0.67 +1.2
4,118,782 - Psyr_3455 0.67 -0.6
4,119,070 + +1.0
4,119,070 + +0.3
4,119,071 - -1.5
4,119,103 - +1.1
4,119,125 + -0.4
4,119,126 - +1.7
4,119,288 + Psyr_3456 0.22 +0.1
4,119,306 + Psyr_3456 0.23 +1.0
4,119,307 - Psyr_3456 0.23 -0.7
4,119,307 - Psyr_3456 0.23 -0.3
4,119,307 - Psyr_3456 0.23 -0.3
4,119,307 - Psyr_3456 0.23 +0.9
4,119,570 + Psyr_3456 0.49 +0.2
4,119,571 - Psyr_3456 0.49 +0.8
4,119,665 - Psyr_3456 0.59 +0.8
4,119,761 + Psyr_3456 0.68 -0.6
4,119,762 - Psyr_3456 0.68 +0.5
4,119,771 + Psyr_3456 0.69 +0.2
4,119,772 - Psyr_3456 0.69 +0.7
4,119,772 - Psyr_3456 0.69 +0.3
4,119,841 + Psyr_3456 0.76 +3.0
4,119,841 + Psyr_3456 0.76 +0.6
4,119,841 + Psyr_3456 0.76 +0.8
4,119,841 + Psyr_3456 0.76 -0.3
4,119,841 + Psyr_3456 0.76 -0.8
4,119,841 + Psyr_3456 0.76 +0.1
4,119,841 + Psyr_3456 0.76 -0.3
4,119,842 - Psyr_3456 0.76 +1.3
4,119,842 - Psyr_3456 0.76 -0.4
4,119,842 - Psyr_3456 0.76 -0.1
4,119,842 - Psyr_3456 0.76 -0.7
4,119,842 - Psyr_3456 0.76 -0.2
4,120,033 - -0.3

Or see this region's nucleotide sequence