Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3401

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3400 and Psyr_3401 are separated by 38 nucleotidesPsyr_3401 and Psyr_3402 are separated by 184 nucleotides Psyr_3400: Psyr_3400 - FAD dependent oxidoreductase, at 4,056,800 to 4,057,984 _3400 Psyr_3401: Psyr_3401 - GCN5-related N-acetyltransferase, at 4,058,023 to 4,058,880 _3401 Psyr_3402: Psyr_3402 - Aldehyde dehydrogenase, at 4,059,065 to 4,060,525 _3402 Position (kb) 4058 4059Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4057.112 kb on + strand, within Psyr_3400at 4057.113 kb on - strand, within Psyr_3400at 4057.218 kb on - strand, within Psyr_3400at 4057.374 kb on + strand, within Psyr_3400at 4057.374 kb on + strand, within Psyr_3400at 4057.374 kb on + strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.554 kb on - strand, within Psyr_3400at 4057.554 kb on - strand, within Psyr_3400at 4057.606 kb on + strand, within Psyr_3400at 4057.635 kb on - strand, within Psyr_3400at 4057.635 kb on - strand, within Psyr_3400at 4057.796 kb on + strand, within Psyr_3400at 4057.796 kb on + strand, within Psyr_3400at 4057.796 kb on + strand, within Psyr_3400at 4057.797 kb on - strand, within Psyr_3400at 4057.797 kb on - strand, within Psyr_3400at 4057.797 kb on - strand, within Psyr_3400at 4057.981 kb on - strandat 4057.981 kb on - strandat 4058.048 kb on - strandat 4058.151 kb on + strand, within Psyr_3401at 4058.151 kb on + strand, within Psyr_3401at 4058.151 kb on + strand, within Psyr_3401at 4058.151 kb on + strand, within Psyr_3401at 4058.151 kb on + strand, within Psyr_3401at 4058.151 kb on + strand, within Psyr_3401at 4058.151 kb on + strand, within Psyr_3401at 4058.152 kb on - strand, within Psyr_3401at 4058.152 kb on - strand, within Psyr_3401at 4058.152 kb on - strand, within Psyr_3401at 4058.460 kb on - strand, within Psyr_3401at 4058.463 kb on + strand, within Psyr_3401at 4058.463 kb on + strand, within Psyr_3401at 4058.463 kb on + strand, within Psyr_3401at 4058.463 kb on + strand, within Psyr_3401at 4058.463 kb on + strand, within Psyr_3401at 4058.464 kb on - strand, within Psyr_3401at 4058.464 kb on - strand, within Psyr_3401at 4058.464 kb on - strand, within Psyr_3401at 4058.464 kb on - strand, within Psyr_3401at 4058.464 kb on - strand, within Psyr_3401at 4058.464 kb on - strand, within Psyr_3401at 4058.637 kb on + strand, within Psyr_3401at 4058.638 kb on - strand, within Psyr_3401at 4058.638 kb on - strand, within Psyr_3401at 4058.638 kb on - strand, within Psyr_3401at 4058.638 kb on - strand, within Psyr_3401at 4058.666 kb on + strand, within Psyr_3401at 4058.666 kb on + strand, within Psyr_3401at 4058.667 kb on - strand, within Psyr_3401at 4058.667 kb on - strand, within Psyr_3401at 4058.667 kb on - strand, within Psyr_3401at 4058.667 kb on - strand, within Psyr_3401at 4058.667 kb on - strand, within Psyr_3401at 4058.667 kb on - strand, within Psyr_3401at 4058.932 kb on + strandat 4058.932 kb on + strandat 4058.932 kb on + strandat 4058.933 kb on - strandat 4058.933 kb on - strandat 4058.942 kb on + strandat 4058.942 kb on + strandat 4058.943 kb on - strandat 4058.991 kb on + strandat 4058.991 kb on + strandat 4059.122 kb on + strandat 4059.122 kb on + strandat 4059.122 kb on + strandat 4059.122 kb on + strandat 4059.122 kb on + strandat 4059.123 kb on - strandat 4059.123 kb on - strandat 4059.123 kb on - strandat 4059.123 kb on - strandat 4059.123 kb on - strandat 4059.123 kb on - strandat 4059.461 kb on + strand, within Psyr_3402at 4059.462 kb on - strand, within Psyr_3402at 4059.462 kb on - strand, within Psyr_3402

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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4,057,112 + Psyr_3400 0.26 -0.4
4,057,113 - Psyr_3400 0.26 +0.0
4,057,218 - Psyr_3400 0.35 -2.2
4,057,374 + Psyr_3400 0.48 +1.4
4,057,374 + Psyr_3400 0.48 -1.7
4,057,374 + Psyr_3400 0.48 -1.5
4,057,375 - Psyr_3400 0.49 +0.8
4,057,375 - Psyr_3400 0.49 +2.8
4,057,375 - Psyr_3400 0.49 +2.1
4,057,375 - Psyr_3400 0.49 +0.5
4,057,375 - Psyr_3400 0.49 -0.2
4,057,375 - Psyr_3400 0.49 +0.7
4,057,553 + Psyr_3400 0.64 -1.4
4,057,553 + Psyr_3400 0.64 +0.5
4,057,553 + Psyr_3400 0.64 +0.6
4,057,553 + Psyr_3400 0.64 -0.1
4,057,553 + Psyr_3400 0.64 -1.5
4,057,554 - Psyr_3400 0.64 +1.6
4,057,554 - Psyr_3400 0.64 +0.8
4,057,606 + Psyr_3400 0.68 +0.4
4,057,635 - Psyr_3400 0.70 +0.0
4,057,635 - Psyr_3400 0.70 +0.2
4,057,796 + Psyr_3400 0.84 -0.3
4,057,796 + Psyr_3400 0.84 +0.4
4,057,796 + Psyr_3400 0.84 -0.5
4,057,797 - Psyr_3400 0.84 -0.2
4,057,797 - Psyr_3400 0.84 -0.0
4,057,797 - Psyr_3400 0.84 -1.5
4,057,981 - +1.3
4,057,981 - +0.6
4,058,048 - +0.5
4,058,151 + Psyr_3401 0.15 -0.4
4,058,151 + Psyr_3401 0.15 +0.4
4,058,151 + Psyr_3401 0.15 +1.4
4,058,151 + Psyr_3401 0.15 +0.5
4,058,151 + Psyr_3401 0.15 +1.0
4,058,151 + Psyr_3401 0.15 -0.5
4,058,151 + Psyr_3401 0.15 +0.6
4,058,152 - Psyr_3401 0.15 +1.2
4,058,152 - Psyr_3401 0.15 -0.7
4,058,152 - Psyr_3401 0.15 +0.9
4,058,460 - Psyr_3401 0.51 -0.1
4,058,463 + Psyr_3401 0.51 -0.8
4,058,463 + Psyr_3401 0.51 +1.4
4,058,463 + Psyr_3401 0.51 +0.0
4,058,463 + Psyr_3401 0.51 -1.2
4,058,463 + Psyr_3401 0.51 -0.8
4,058,464 - Psyr_3401 0.51 +2.6
4,058,464 - Psyr_3401 0.51 -0.6
4,058,464 - Psyr_3401 0.51 -0.6
4,058,464 - Psyr_3401 0.51 +1.0
4,058,464 - Psyr_3401 0.51 +0.4
4,058,464 - Psyr_3401 0.51 +0.1
4,058,637 + Psyr_3401 0.72 -0.5
4,058,638 - Psyr_3401 0.72 -1.2
4,058,638 - Psyr_3401 0.72 +1.0
4,058,638 - Psyr_3401 0.72 +0.4
4,058,638 - Psyr_3401 0.72 +2.6
4,058,666 + Psyr_3401 0.75 -0.2
4,058,666 + Psyr_3401 0.75 +0.4
4,058,667 - Psyr_3401 0.75 +0.0
4,058,667 - Psyr_3401 0.75 +0.4
4,058,667 - Psyr_3401 0.75 -0.4
4,058,667 - Psyr_3401 0.75 -0.2
4,058,667 - Psyr_3401 0.75 +0.8
4,058,667 - Psyr_3401 0.75 +0.8
4,058,932 + -1.2
4,058,932 + -0.2
4,058,932 + +0.2
4,058,933 - +0.9
4,058,933 - +0.9
4,058,942 + +0.6
4,058,942 + +0.0
4,058,943 - +3.0
4,058,991 + +0.2
4,058,991 + -0.0
4,059,122 + -1.4
4,059,122 + -0.6
4,059,122 + +1.3
4,059,122 + +0.0
4,059,122 + +0.4
4,059,123 - +0.7
4,059,123 - -1.0
4,059,123 - +0.2
4,059,123 - -0.9
4,059,123 - -1.0
4,059,123 - -0.0
4,059,461 + Psyr_3402 0.27 +1.6
4,059,462 - Psyr_3402 0.27 +0.6
4,059,462 - Psyr_3402 0.27 +0.5

Or see this region's nucleotide sequence