Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3308

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3307 and Psyr_3308 overlap by 10 nucleotidesPsyr_3308 and Psyr_3309 overlap by 1 nucleotides Psyr_3307: Psyr_3307 - Glycosyl transferase, group 1, at 3,958,098 to 3,959,315 _3307 Psyr_3308: Psyr_3308 - Glycosyl transferase, group 1, at 3,959,306 to 3,960,406 _3308 Psyr_3309: Psyr_3309 - membrane protein, putative, at 3,960,406 to 3,961,821 _3309 Position (kb) 3959 3960 3961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3958.317 kb on - strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.542 kb on + strand, within Psyr_3307at 3958.542 kb on + strand, within Psyr_3307at 3958.581 kb on + strand, within Psyr_3307at 3958.582 kb on - strand, within Psyr_3307at 3958.669 kb on + strand, within Psyr_3307at 3958.670 kb on - strand, within Psyr_3307at 3958.701 kb on + strand, within Psyr_3307at 3958.701 kb on + strand, within Psyr_3307at 3958.701 kb on + strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.728 kb on + strand, within Psyr_3307at 3958.729 kb on - strand, within Psyr_3307at 3958.729 kb on - strand, within Psyr_3307at 3958.732 kb on - strand, within Psyr_3307at 3958.732 kb on - strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.791 kb on + strand, within Psyr_3307at 3958.867 kb on + strand, within Psyr_3307at 3958.867 kb on + strand, within Psyr_3307at 3958.867 kb on + strand, within Psyr_3307at 3958.867 kb on + strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3959.115 kb on + strand, within Psyr_3307at 3959.115 kb on + strand, within Psyr_3307at 3959.116 kb on - strand, within Psyr_3307at 3959.116 kb on - strand, within Psyr_3307at 3959.116 kb on - strand, within Psyr_3307at 3959.163 kb on + strand, within Psyr_3307at 3959.164 kb on - strand, within Psyr_3307at 3959.172 kb on - strand, within Psyr_3307at 3959.214 kb on + strandat 3959.215 kb on - strandat 3959.215 kb on - strandat 3959.268 kb on + strandat 3959.268 kb on + strandat 3959.268 kb on + strandat 3959.268 kb on + strandat 3959.268 kb on + strandat 3959.269 kb on - strandat 3959.269 kb on - strandat 3959.269 kb on - strandat 3959.269 kb on - strandat 3959.269 kb on - strandat 3959.311 kb on + strandat 3959.312 kb on - strandat 3959.313 kb on + strandat 3959.313 kb on + strandat 3959.313 kb on + strandat 3959.313 kb on + strandat 3959.314 kb on - strandat 3959.576 kb on + strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.577 kb on - strand, within Psyr_3308at 3959.587 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.628 kb on + strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.629 kb on - strand, within Psyr_3308at 3959.633 kb on + strand, within Psyr_3308at 3959.634 kb on - strand, within Psyr_3308at 3959.637 kb on + strand, within Psyr_3308at 3959.637 kb on + strand, within Psyr_3308at 3959.637 kb on + strand, within Psyr_3308at 3959.637 kb on + strand, within Psyr_3308at 3959.638 kb on - strand, within Psyr_3308at 3959.638 kb on - strand, within Psyr_3308at 3959.638 kb on - strand, within Psyr_3308at 3959.724 kb on - strand, within Psyr_3308at 3959.803 kb on + strand, within Psyr_3308at 3959.803 kb on + strand, within Psyr_3308at 3959.803 kb on + strand, within Psyr_3308at 3959.803 kb on + strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.804 kb on - strand, within Psyr_3308at 3959.838 kb on + strand, within Psyr_3308at 3960.010 kb on - strand, within Psyr_3308at 3960.054 kb on + strand, within Psyr_3308at 3960.446 kb on + strandat 3960.584 kb on - strand, within Psyr_3309at 3960.652 kb on + strand, within Psyr_3309at 3960.652 kb on + strand, within Psyr_3309at 3960.653 kb on - strand, within Psyr_3309at 3960.653 kb on - strand, within Psyr_3309at 3960.806 kb on + strand, within Psyr_3309at 3960.938 kb on - strand, within Psyr_3309at 3960.991 kb on + strand, within Psyr_3309at 3961.318 kb on + strand, within Psyr_3309at 3961.319 kb on - strand, within Psyr_3309at 3961.394 kb on - strand, within Psyr_3309at 3961.394 kb on - strand, within Psyr_3309

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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3,958,317 - Psyr_3307 0.18 +0.2
3,958,446 + Psyr_3307 0.29 +0.8
3,958,446 + Psyr_3307 0.29 -0.3
3,958,446 + Psyr_3307 0.29 +0.2
3,958,446 + Psyr_3307 0.29 -0.7
3,958,446 + Psyr_3307 0.29 +0.4
3,958,446 + Psyr_3307 0.29 -1.3
3,958,447 - Psyr_3307 0.29 -0.1
3,958,447 - Psyr_3307 0.29 +1.6
3,958,447 - Psyr_3307 0.29 -0.2
3,958,447 - Psyr_3307 0.29 -0.4
3,958,447 - Psyr_3307 0.29 -1.8
3,958,447 - Psyr_3307 0.29 -0.5
3,958,447 - Psyr_3307 0.29 -2.5
3,958,447 - Psyr_3307 0.29 +0.2
3,958,447 - Psyr_3307 0.29 -1.2
3,958,447 - Psyr_3307 0.29 -0.8
3,958,447 - Psyr_3307 0.29 +3.1
3,958,542 + Psyr_3307 0.36 -0.4
3,958,542 + Psyr_3307 0.36 -1.2
3,958,581 + Psyr_3307 0.40 +0.5
3,958,582 - Psyr_3307 0.40 -3.1
3,958,669 + Psyr_3307 0.47 -0.1
3,958,670 - Psyr_3307 0.47 -0.5
3,958,701 + Psyr_3307 0.50 -1.6
3,958,701 + Psyr_3307 0.50 +0.8
3,958,701 + Psyr_3307 0.50 -1.5
3,958,702 - Psyr_3307 0.50 -0.1
3,958,702 - Psyr_3307 0.50 +0.3
3,958,702 - Psyr_3307 0.50 +0.8
3,958,702 - Psyr_3307 0.50 +1.6
3,958,702 - Psyr_3307 0.50 +1.0
3,958,728 + Psyr_3307 0.52 -1.1
3,958,729 - Psyr_3307 0.52 -1.3
3,958,729 - Psyr_3307 0.52 -0.8
3,958,732 - Psyr_3307 0.52 +0.8
3,958,732 - Psyr_3307 0.52 +0.4
3,958,785 + Psyr_3307 0.56 -1.0
3,958,785 + Psyr_3307 0.56 -0.6
3,958,785 + Psyr_3307 0.56 +0.2
3,958,785 + Psyr_3307 0.56 +1.6
3,958,785 + Psyr_3307 0.56 -0.5
3,958,786 - Psyr_3307 0.56 +0.2
3,958,786 - Psyr_3307 0.56 +2.4
3,958,786 - Psyr_3307 0.56 -0.8
3,958,786 - Psyr_3307 0.56 -0.5
3,958,786 - Psyr_3307 0.56 +0.7
3,958,786 - Psyr_3307 0.56 -0.3
3,958,791 + Psyr_3307 0.57 -0.3
3,958,867 + Psyr_3307 0.63 +0.2
3,958,867 + Psyr_3307 0.63 +2.0
3,958,867 + Psyr_3307 0.63 +1.4
3,958,867 + Psyr_3307 0.63 -0.8
3,958,868 - Psyr_3307 0.63 -0.2
3,958,868 - Psyr_3307 0.63 +1.1
3,958,868 - Psyr_3307 0.63 -0.2
3,958,868 - Psyr_3307 0.63 +1.0
3,958,868 - Psyr_3307 0.63 +0.3
3,958,868 - Psyr_3307 0.63 -0.2
3,959,115 + Psyr_3307 0.83 +0.6
3,959,115 + Psyr_3307 0.83 +1.0
3,959,116 - Psyr_3307 0.84 +0.8
3,959,116 - Psyr_3307 0.84 -1.6
3,959,116 - Psyr_3307 0.84 +0.5
3,959,163 + Psyr_3307 0.87 -1.5
3,959,164 - Psyr_3307 0.88 -2.3
3,959,172 - Psyr_3307 0.88 -0.8
3,959,214 + -2.3
3,959,215 - -0.5
3,959,215 - +1.4
3,959,268 + +0.5
3,959,268 + +1.2
3,959,268 + +1.2
3,959,268 + -0.5
3,959,268 + +1.4
3,959,269 - -0.2
3,959,269 - -1.0
3,959,269 - +0.8
3,959,269 - -0.7
3,959,269 - -0.6
3,959,311 + +0.4
3,959,312 - +1.1
3,959,313 + +1.0
3,959,313 + -1.0
3,959,313 + +0.6
3,959,313 + -0.2
3,959,314 - +0.2
3,959,576 + Psyr_3308 0.25 +0.4
3,959,577 - Psyr_3308 0.25 +0.8
3,959,577 - Psyr_3308 0.25 +2.4
3,959,577 - Psyr_3308 0.25 +0.8
3,959,577 - Psyr_3308 0.25 +0.4
3,959,577 - Psyr_3308 0.25 +1.6
3,959,587 + Psyr_3308 0.26 -0.5
3,959,628 + Psyr_3308 0.29 +2.6
3,959,628 + Psyr_3308 0.29 -0.8
3,959,628 + Psyr_3308 0.29 +0.5
3,959,628 + Psyr_3308 0.29 -0.0
3,959,628 + Psyr_3308 0.29 +0.8
3,959,628 + Psyr_3308 0.29 -0.2
3,959,628 + Psyr_3308 0.29 -0.8
3,959,628 + Psyr_3308 0.29 -1.5
3,959,628 + Psyr_3308 0.29 +0.5
3,959,628 + Psyr_3308 0.29 +1.6
3,959,628 + Psyr_3308 0.29 +0.1
3,959,629 - Psyr_3308 0.29 +0.3
3,959,629 - Psyr_3308 0.29 -0.8
3,959,629 - Psyr_3308 0.29 +0.7
3,959,629 - Psyr_3308 0.29 +0.8
3,959,629 - Psyr_3308 0.29 +1.8
3,959,629 - Psyr_3308 0.29 -1.3
3,959,629 - Psyr_3308 0.29 +2.1
3,959,629 - Psyr_3308 0.29 -0.8
3,959,629 - Psyr_3308 0.29 +0.4
3,959,633 + Psyr_3308 0.30 -1.2
3,959,634 - Psyr_3308 0.30 +0.4
3,959,637 + Psyr_3308 0.30 +0.2
3,959,637 + Psyr_3308 0.30 +0.7
3,959,637 + Psyr_3308 0.30 +0.6
3,959,637 + Psyr_3308 0.30 -2.8
3,959,638 - Psyr_3308 0.30 -1.5
3,959,638 - Psyr_3308 0.30 +1.6
3,959,638 - Psyr_3308 0.30 -0.4
3,959,724 - Psyr_3308 0.38 +0.5
3,959,803 + Psyr_3308 0.45 -0.2
3,959,803 + Psyr_3308 0.45 +0.1
3,959,803 + Psyr_3308 0.45 -1.1
3,959,803 + Psyr_3308 0.45 +0.2
3,959,804 - Psyr_3308 0.45 +0.8
3,959,804 - Psyr_3308 0.45 +0.8
3,959,804 - Psyr_3308 0.45 +1.4
3,959,804 - Psyr_3308 0.45 -0.8
3,959,804 - Psyr_3308 0.45 +1.7
3,959,838 + Psyr_3308 0.48 +1.4
3,960,010 - Psyr_3308 0.64 +0.5
3,960,054 + Psyr_3308 0.68 +0.2
3,960,446 + +0.1
3,960,584 - Psyr_3309 0.13 +0.7
3,960,652 + Psyr_3309 0.17 -1.2
3,960,652 + Psyr_3309 0.17 -1.2
3,960,653 - Psyr_3309 0.17 +0.8
3,960,653 - Psyr_3309 0.17 -0.7
3,960,806 + Psyr_3309 0.28 -0.2
3,960,938 - Psyr_3309 0.38 +0.3
3,960,991 + Psyr_3309 0.41 +0.5
3,961,318 + Psyr_3309 0.64 +0.2
3,961,319 - Psyr_3309 0.64 +1.4
3,961,394 - Psyr_3309 0.70 -0.5
3,961,394 - Psyr_3309 0.70 +0.4

Or see this region's nucleotide sequence