Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2663

Experiment: KB with Acriflavine 7.75 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acriflavine 7.75 ug/ml
3,232,947	+				+2.3
3,232,948	-				-1.3
3,232,964	+				+1.1
3,232,964	+				+0.7
3,232,964	+				-0.3
3,232,964	+				-0.1
3,232,965	-				+0.4
3,232,965	-				+1.7
3,232,965	-				-0.8
3,232,984	+				-0.3
3,232,985	-				-1.5
3,232,985	-				+0.7
3,232,985	-				-0.9
3,232,993	+				+0.3
3,232,995	+				+0.7
3,232,995	+				-0.8
3,232,996	-				-0.5
3,232,996	-				-0.7
3,233,055	-		Psyr_2662	0.14	+0.3
3,233,069	+		Psyr_2662	0.17	-0.5
3,233,070	-		Psyr_2662	0.17	-1.1
3,233,072	-		Psyr_2662	0.17	+0.1
3,233,166	+		Psyr_2662	0.34	+0.5
3,233,378	+		Psyr_2662	0.72	-2.6
3,233,378	+		Psyr_2662	0.72	-0.8
3,233,378	+		Psyr_2662	0.72	-0.7
3,233,379	-		Psyr_2662	0.73	-0.0
3,233,379	-		Psyr_2662	0.73	-0.1
3,233,379	-		Psyr_2662	0.73	-1.5
3,233,379	-		Psyr_2662	0.73	-1.3
3,233,380	+		Psyr_2662	0.73	+0.7
3,233,381	-		Psyr_2662	0.73	-0.5
3,233,381	-		Psyr_2662	0.73	+2.0
3,233,381	-		Psyr_2662	0.73	+0.1
3,233,388	-		Psyr_2662	0.74	-1.6
3,233,388	-		Psyr_2662	0.74	+0.7
3,233,388	-		Psyr_2662	0.74	+0.3
3,233,400	+		Psyr_2662	0.76	-1.4
3,233,400	+		Psyr_2662	0.76	-1.0
3,233,401	-		Psyr_2662	0.77	-1.5
3,233,469	-		Psyr_2662	0.89	+0.4
3,233,520	+				-2.1
3,233,520	+				-1.1
3,233,520	+				-0.0
3,233,520	+				+0.6
3,233,520	+				+0.7
3,233,520	+				+0.7
3,233,520	+				+0.7
3,233,520	+				-0.2
3,233,520	+				-0.9
3,233,521	-				-0.8
3,233,521	-				-1.5
3,233,521	-				-0.8
3,233,521	-				-0.3
3,233,521	-				+0.0
3,233,521	-				+0.9
3,233,521	-				+0.7
3,233,521	-				-1.8
3,233,522	+				-1.0
3,233,522	+				-0.1
3,233,523	-				-0.9
3,233,523	-				-1.1
3,233,523	-				+0.4
3,233,523	-				-0.8
3,233,523	-				-0.4
3,233,523	-				+0.7
3,233,622	+				+1.1
3,233,623	-				-1.8
3,233,640	+				+1.9
3,233,641	-				+2.7
3,233,641	-				-0.3
3,233,713	+				+0.4
3,233,714	-				+1.3
3,233,716	+				-0.6
3,233,716	+				+2.3
3,233,716	+				-0.8
3,233,716	+				-0.0
3,233,716	+				-1.0
3,233,717	-				+0.1
3,233,717	-				+0.7
3,233,717	-				+1.1
3,233,717	-				+0.6
3,233,717	-				-0.6
3,233,717	-				+0.7
3,233,722	+				+0.4
3,233,733	+				+0.9
3,233,733	+				-0.6
3,233,733	+				+0.8
3,233,733	+				-0.7
3,233,733	+				-0.1
3,233,763	-				-1.6
3,233,763	-				+0.9
3,233,763	-				-2.0
3,233,775	-				-0.7
3,233,797	+				+2.3
3,233,797	+				+0.7
3,233,814	+				+0.3
3,233,843	+				-1.1
3,233,843	+				-0.0
3,233,843	+				-0.5
3,233,843	+				+2.0
3,233,843	+				-0.1
3,233,843	+				+0.3
3,233,844	-				-1.5
3,233,847	+				+0.9
3,233,847	+				-0.1
3,233,847	+				+0.9
3,233,847	+				+0.4
3,233,847	+				+0.4
3,233,848	-				-0.4
3,233,848	-				-0.8
3,233,848	-				-1.5
3,233,942	+				+0.9
3,233,945	-				-0.7
3,233,945	-				-1.4
3,233,945	-				+0.4
3,233,945	-				-0.4
3,233,945	-				+2.1
3,233,962	+		Psyr_2663	0.14	+0.0
3,234,140	+		Psyr_2663	0.63	+1.7
3,234,140	+		Psyr_2663	0.63	-0.3
3,234,140	+		Psyr_2663	0.63	-0.4
3,234,140	+		Psyr_2663	0.63	-0.9
3,234,140	+		Psyr_2663	0.63	+1.6
3,234,140	+		Psyr_2663	0.63	-1.3
3,234,141	-		Psyr_2663	0.64	+1.7
3,234,141	-		Psyr_2663	0.64	-0.3
3,234,141	-		Psyr_2663	0.64	-1.9
3,234,154	+		Psyr_2663	0.67	-0.1
3,234,192	+		Psyr_2663	0.78	+0.1
3,234,192	+		Psyr_2663	0.78	-0.5
3,234,193	-		Psyr_2663	0.78	-1.1
3,234,225	+		Psyr_2663	0.87	-0.1
3,234,225	+		Psyr_2663	0.87	-0.9
3,234,225	+		Psyr_2663	0.87	+2.2
3,234,229	+		Psyr_2663	0.88	-1.0
3,234,229	+		Psyr_2663	0.88	+0.1
3,234,229	+		Psyr_2663	0.88	-1.4
3,234,230	-		Psyr_2663	0.88	-0.1
3,234,230	-		Psyr_2663	0.88	+0.3
3,234,230	-		Psyr_2663	0.88	+0.3
3,234,230	-		Psyr_2663	0.88	-1.5
3,234,273	+				-1.0
3,234,273	+				-0.3
3,234,273	+				-1.5
3,234,274	-				-0.3
3,234,274	-				+0.7
3,234,274	-				+0.3
3,234,327	+				+0.7
3,234,384	+				-0.3
3,234,384	+				-0.9
3,234,385	-				-0.0
3,234,385	-				+0.7
3,234,417	+				-0.0
3,234,417	+				-0.1
3,234,418	-				+1.2
3,234,418	-				+0.7
3,234,564	+		Psyr_2664	0.21	-0.0
3,234,564	+		Psyr_2664	0.21	+0.1
3,234,564	+		Psyr_2664	0.21	-0.9
3,234,564	+				+0.1
3,234,565	-		Psyr_2664	0.21	-1.8
3,234,565	-		Psyr_2664	0.21	-0.8
3,234,565	-		Psyr_2664	0.21	+2.3
3,234,565	-		Psyr_2664	0.21	-0.9
3,234,565	-		Psyr_2664	0.21	-2.1
3,234,587	-		Psyr_2664	0.24	-1.0
3,234,621	+		Psyr_2664	0.28	-1.4
3,234,672	+		Psyr_2664	0.36	-0.5
3,234,672	+		Psyr_2664	0.36	-2.3
3,234,672	+		Psyr_2664	0.36	-0.1
3,234,673	-		Psyr_2664	0.36	-0.3
3,234,691	+		Psyr_2664	0.38	+0.7
3,234,691	+		Psyr_2664	0.38	+0.2
3,234,691	+		Psyr_2664	0.38	+0.2
3,234,691	+		Psyr_2664	0.38	+0.7
3,234,692	-		Psyr_2664	0.38	-0.3
3,234,692	-		Psyr_2664	0.38	-1.1
3,234,712	+		Psyr_2664	0.41	-0.0
3,234,712	+		Psyr_2664	0.41	-2.1
3,234,713	-		Psyr_2664	0.41	+0.1
3,234,824	-		Psyr_2664	0.57	+0.5
3,234,872	+		Psyr_2664	0.63	+0.3
3,234,873	-		Psyr_2664	0.63	-0.3
3,234,873	-		Psyr_2664	0.63	-1.0
3,234,873	-		Psyr_2664	0.63	-0.2
3,234,873	-		Psyr_2664	0.63	-0.9
3,234,873	-		Psyr_2664	0.63	+0.3
3,234,873	-		Psyr_2664	0.63	-0.3
3,234,874	+		Psyr_2664	0.64	-1.3
3,234,875	-		Psyr_2664	0.64	-1.5
3,234,905	-		Psyr_2664	0.68	+0.7
3,234,953	+		Psyr_2664	0.75	-2.5
3,234,954	-		Psyr_2664	0.75	-0.0
3,235,013	+		Psyr_2664	0.83	-0.5
3,235,014	-		Psyr_2664	0.83	+0.7
3,235,097	+				+0.5
3,235,098	-				+0.6
3,235,098	-				-2.5
3,235,098	-				+1.3
3,235,098	-				-0.9
3,235,099	+				-0.4
3,235,099	+				-2.1
3,235,099	+				-0.2
3,235,099	+				-1.3
3,235,099	+				-0.3
3,235,099	+				-0.9
3,235,099	+				-0.9
3,235,099	+				-1.9
3,235,099	+				+0.5
3,235,099	+				-1.5
3,235,099	+				+1.7
3,235,099	+				-2.4
3,235,099	+				-0.6
3,235,100	-				+0.7
3,235,100	-				+0.5
3,235,100	-				+1.0
3,235,100	-				-0.8
3,235,100	-				+1.0
3,235,100	-				-0.6
3,235,100	-				+0.5
3,235,103	+				-1.1
3,235,103	+				-1.6
3,235,103	+				-0.9
3,235,103	+				-0.3
3,235,103	+				-0.3
3,235,103	+				-0.9
3,235,103	+				-0.3
3,235,104	-				-1.9
3,235,104	-				-1.5
3,235,104	-				-0.4
3,235,106	+				-0.9
3,235,130	-				-0.3
3,235,181	+				-1.1
3,235,269	+				-1.6
3,235,269	+				-0.9