Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2589

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2587 and Psyr_2588 overlap by 4 nucleotidesPsyr_2588 and Psyr_2589 are separated by 3 nucleotidesPsyr_2589 and Psyr_2590 overlap by 11 nucleotidesPsyr_2590 and Psyr_2591 overlap by 4 nucleotides Psyr_2587: Psyr_2587 - IucA/IucC, at 3,032,283 to 3,034,142 _2587 Psyr_2588: Psyr_2588 - HpcH/HpaI aldolase, at 3,034,139 to 3,034,915 _2588 Psyr_2589: Psyr_2589 - IucA/IucC, at 3,034,919 to 3,036,802 _2589 Psyr_2590: Psyr_2590 - Periplasmic binding protein, at 3,036,792 to 3,037,697 _2590 Psyr_2591: Psyr_2591 - transport system permease protein, at 3,037,694 to 3,038,683 _2591 Position (kb) 3034 3035 3036 3037Strain fitness (log2 ratio) -3 -2 -1 0 1at 3033.981 kb on + strandat 3033.982 kb on - strandat 3034.108 kb on + strandat 3034.113 kb on - strandat 3034.128 kb on + strandat 3034.128 kb on + strandat 3034.475 kb on + strand, within Psyr_2588at 3034.475 kb on + strand, within Psyr_2588at 3034.476 kb on - strand, within Psyr_2588at 3034.720 kb on - strand, within Psyr_2588at 3035.064 kb on + strandat 3035.064 kb on + strandat 3035.065 kb on - strandat 3035.065 kb on - strandat 3035.501 kb on + strand, within Psyr_2589at 3035.501 kb on + strand, within Psyr_2589at 3035.501 kb on + strand, within Psyr_2589at 3035.505 kb on + strand, within Psyr_2589at 3035.505 kb on + strand, within Psyr_2589at 3035.505 kb on + strand, within Psyr_2589at 3035.505 kb on + strand, within Psyr_2589at 3035.505 kb on + strand, within Psyr_2589at 3035.505 kb on + strand, within Psyr_2589at 3035.506 kb on - strand, within Psyr_2589at 3035.506 kb on - strand, within Psyr_2589at 3035.506 kb on - strand, within Psyr_2589at 3035.506 kb on - strand, within Psyr_2589at 3035.621 kb on + strand, within Psyr_2589at 3035.935 kb on - strand, within Psyr_2589at 3036.389 kb on - strand, within Psyr_2589at 3036.461 kb on - strand, within Psyr_2589at 3036.560 kb on + strand, within Psyr_2589at 3036.560 kb on + strand, within Psyr_2589at 3036.560 kb on + strand, within Psyr_2589at 3036.560 kb on + strand, within Psyr_2589at 3036.561 kb on - strand, within Psyr_2589at 3036.561 kb on - strand, within Psyr_2589at 3036.561 kb on - strand, within Psyr_2589at 3036.561 kb on - strand, within Psyr_2589at 3036.592 kb on - strand, within Psyr_2589at 3036.828 kb on - strandat 3036.987 kb on + strand, within Psyr_2590at 3036.987 kb on + strand, within Psyr_2590at 3036.988 kb on - strand, within Psyr_2590at 3036.988 kb on - strand, within Psyr_2590at 3037.350 kb on + strand, within Psyr_2590at 3037.350 kb on + strand, within Psyr_2590at 3037.591 kb on + strand, within Psyr_2590

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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3,033,981 + -0.3
3,033,982 - +0.4
3,034,108 + +0.7
3,034,113 - +1.5
3,034,128 + +1.6
3,034,128 + +0.6
3,034,475 + Psyr_2588 0.43 -0.2
3,034,475 + Psyr_2588 0.43 -2.7
3,034,476 - Psyr_2588 0.43 -1.5
3,034,720 - Psyr_2588 0.75 -0.2
3,035,064 + +0.7
3,035,064 + +0.7
3,035,065 - -0.1
3,035,065 - -1.1
3,035,501 + Psyr_2589 0.31 +0.7
3,035,501 + Psyr_2589 0.31 -0.7
3,035,501 + Psyr_2589 0.31 +0.0
3,035,505 + Psyr_2589 0.31 -0.1
3,035,505 + Psyr_2589 0.31 +0.2
3,035,505 + Psyr_2589 0.31 +1.2
3,035,505 + Psyr_2589 0.31 -1.1
3,035,505 + Psyr_2589 0.31 +0.3
3,035,505 + Psyr_2589 0.31 +0.7
3,035,506 - Psyr_2589 0.31 -0.6
3,035,506 - Psyr_2589 0.31 -1.7
3,035,506 - Psyr_2589 0.31 -0.3
3,035,506 - Psyr_2589 0.31 -0.8
3,035,621 + Psyr_2589 0.37 -0.5
3,035,935 - Psyr_2589 0.54 -0.8
3,036,389 - Psyr_2589 0.78 -1.6
3,036,461 - Psyr_2589 0.82 +1.3
3,036,560 + Psyr_2589 0.87 -3.3
3,036,560 + Psyr_2589 0.87 -0.8
3,036,560 + Psyr_2589 0.87 -0.7
3,036,560 + Psyr_2589 0.87 +0.5
3,036,561 - Psyr_2589 0.87 +0.7
3,036,561 - Psyr_2589 0.87 -0.8
3,036,561 - Psyr_2589 0.87 -0.8
3,036,561 - Psyr_2589 0.87 -2.6
3,036,592 - Psyr_2589 0.89 +0.7
3,036,828 - -0.4
3,036,987 + Psyr_2590 0.22 +0.0
3,036,987 + Psyr_2590 0.22 -0.4
3,036,988 - Psyr_2590 0.22 +1.7
3,036,988 - Psyr_2590 0.22 -1.5
3,037,350 + Psyr_2590 0.62 +0.2
3,037,350 + Psyr_2590 0.62 +0.7
3,037,591 + Psyr_2590 0.88 -0.1

Or see this region's nucleotide sequence