Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2101

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2100 and Psyr_2101 are separated by 276 nucleotidesPsyr_2101 and Psyr_2102 are separated by 7 nucleotides Psyr_2100: Psyr_2100 - assimilatory nitrate reductase (NADH) beta subunit, at 2,449,326 to 2,450,555 _2100 Psyr_2101: Psyr_2101 - Protein kinase, at 2,450,832 to 2,452,493 _2101 Psyr_2102: Psyr_2102 - Nitrate transporter, at 2,452,501 to 2,453,712 _2102 Position (kb) 2450 2451 2452 2453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2450.031 kb on - strand, within Psyr_2100at 2450.036 kb on + strand, within Psyr_2100at 2450.251 kb on + strand, within Psyr_2100at 2450.251 kb on + strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.706 kb on - strandat 2450.886 kb on + strandat 2450.887 kb on - strandat 2451.160 kb on + strand, within Psyr_2101at 2451.161 kb on - strand, within Psyr_2101at 2451.163 kb on + strand, within Psyr_2101at 2451.164 kb on - strand, within Psyr_2101at 2451.164 kb on - strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.235 kb on - strand, within Psyr_2101at 2451.235 kb on - strand, within Psyr_2101at 2451.235 kb on - strand, within Psyr_2101at 2451.235 kb on - strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.405 kb on + strand, within Psyr_2101at 2451.406 kb on - strand, within Psyr_2101at 2451.505 kb on + strand, within Psyr_2101at 2451.505 kb on + strand, within Psyr_2101at 2451.505 kb on + strand, within Psyr_2101at 2451.506 kb on - strand, within Psyr_2101at 2451.506 kb on - strand, within Psyr_2101at 2451.506 kb on - strand, within Psyr_2101at 2451.508 kb on + strand, within Psyr_2101at 2451.508 kb on + strand, within Psyr_2101at 2451.537 kb on + strand, within Psyr_2101at 2451.537 kb on + strand, within Psyr_2101at 2451.537 kb on + strand, within Psyr_2101at 2451.537 kb on + strand, within Psyr_2101at 2451.538 kb on - strand, within Psyr_2101at 2451.681 kb on + strand, within Psyr_2101at 2451.681 kb on + strand, within Psyr_2101at 2451.681 kb on + strand, within Psyr_2101at 2451.681 kb on + strand, within Psyr_2101at 2451.681 kb on + strand, within Psyr_2101at 2451.681 kb on + strand, within Psyr_2101at 2451.682 kb on - strand, within Psyr_2101at 2451.682 kb on - strand, within Psyr_2101at 2451.682 kb on - strand, within Psyr_2101at 2451.682 kb on - strand, within Psyr_2101at 2451.682 kb on - strand, within Psyr_2101at 2451.682 kb on - strandat 2451.682 kb on - strand, within Psyr_2101at 2451.682 kb on - strand, within Psyr_2101at 2452.016 kb on - strand, within Psyr_2101at 2452.030 kb on + strand, within Psyr_2101at 2452.031 kb on - strand, within Psyr_2101at 2452.031 kb on - strand, within Psyr_2101at 2452.031 kb on - strand, within Psyr_2101at 2452.291 kb on + strand, within Psyr_2101at 2452.292 kb on - strand, within Psyr_2101at 2452.294 kb on + strand, within Psyr_2101at 2452.295 kb on - strand, within Psyr_2101at 2452.295 kb on - strand, within Psyr_2101at 2452.382 kb on - strandat 2452.868 kb on + strand, within Psyr_2102at 2452.868 kb on + strand, within Psyr_2102at 2452.868 kb on + strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.869 kb on - strand, within Psyr_2102at 2452.964 kb on + strand, within Psyr_2102at 2452.965 kb on - strand, within Psyr_2102at 2452.965 kb on - strand, within Psyr_2102at 2452.965 kb on - strand, within Psyr_2102at 2452.965 kb on - strand, within Psyr_2102at 2452.965 kb on - strand, within Psyr_2102at 2452.965 kb on - strand, within Psyr_2102at 2452.965 kb on - strand, within Psyr_2102at 2452.968 kb on - strand, within Psyr_2102at 2453.009 kb on + strand, within Psyr_2102at 2453.061 kb on - strand, within Psyr_2102at 2453.263 kb on + strand, within Psyr_2102at 2453.263 kb on + strand, within Psyr_2102at 2453.264 kb on - strand, within Psyr_2102at 2453.264 kb on - strand, within Psyr_2102

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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2,450,031 - Psyr_2100 0.57 -0.1
2,450,036 + Psyr_2100 0.58 +0.7
2,450,251 + Psyr_2100 0.75 +0.7
2,450,251 + Psyr_2100 0.75 -0.3
2,450,429 - Psyr_2100 0.90 -1.1
2,450,429 - Psyr_2100 0.90 +0.0
2,450,429 - Psyr_2100 0.90 -0.3
2,450,429 - Psyr_2100 0.90 +1.3
2,450,429 - Psyr_2100 0.90 +0.9
2,450,429 - Psyr_2100 0.90 -0.5
2,450,429 - Psyr_2100 0.90 +1.6
2,450,429 - Psyr_2100 0.90 -0.3
2,450,706 - -1.8
2,450,886 + +0.0
2,450,887 - +0.1
2,451,160 + Psyr_2101 0.20 +0.4
2,451,161 - Psyr_2101 0.20 +0.3
2,451,163 + Psyr_2101 0.20 +1.0
2,451,164 - Psyr_2101 0.20 -0.3
2,451,164 - Psyr_2101 0.20 +0.6
2,451,234 + Psyr_2101 0.24 -0.4
2,451,234 + Psyr_2101 0.24 +0.5
2,451,234 + Psyr_2101 0.24 -0.5
2,451,234 + Psyr_2101 0.24 -0.0
2,451,234 + Psyr_2101 0.24 -1.3
2,451,234 + Psyr_2101 0.24 +0.5
2,451,234 + Psyr_2101 0.24 +0.4
2,451,234 + Psyr_2101 0.24 +1.6
2,451,234 + Psyr_2101 0.24 +0.5
2,451,234 + Psyr_2101 0.24 +0.2
2,451,234 + Psyr_2101 0.24 -3.0
2,451,235 - Psyr_2101 0.24 +0.2
2,451,235 - Psyr_2101 0.24 +3.0
2,451,235 - Psyr_2101 0.24 +1.0
2,451,235 - Psyr_2101 0.24 -1.3
2,451,236 + Psyr_2101 0.24 +0.5
2,451,236 + Psyr_2101 0.24 +0.7
2,451,236 + Psyr_2101 0.24 +1.6
2,451,236 + Psyr_2101 0.24 +0.9
2,451,236 + Psyr_2101 0.24 +0.4
2,451,236 + Psyr_2101 0.24 -3.4
2,451,236 + Psyr_2101 0.24 -0.1
2,451,237 - Psyr_2101 0.24 -1.9
2,451,237 - Psyr_2101 0.24 -1.1
2,451,237 - Psyr_2101 0.24 +0.4
2,451,237 - Psyr_2101 0.24 -0.3
2,451,237 - Psyr_2101 0.24 -1.3
2,451,237 - Psyr_2101 0.24 +2.0
2,451,238 + Psyr_2101 0.24 +1.6
2,451,238 + Psyr_2101 0.24 +2.3
2,451,238 + Psyr_2101 0.24 -1.0
2,451,238 + Psyr_2101 0.24 +1.0
2,451,238 + Psyr_2101 0.24 +0.5
2,451,238 + Psyr_2101 0.24 -0.2
2,451,238 + Psyr_2101 0.24 +0.6
2,451,238 + Psyr_2101 0.24 -0.7
2,451,238 + Psyr_2101 0.24 +0.4
2,451,238 + Psyr_2101 0.24 -0.7
2,451,238 + Psyr_2101 0.24 -0.7
2,451,238 + Psyr_2101 0.24 +0.1
2,451,238 + Psyr_2101 0.24 +2.6
2,451,238 + Psyr_2101 0.24 -0.8
2,451,238 + Psyr_2101 0.24 +0.3
2,451,238 + Psyr_2101 0.24 +0.1
2,451,239 - Psyr_2101 0.24 +1.0
2,451,239 - Psyr_2101 0.24 +0.7
2,451,239 - Psyr_2101 0.24 -0.3
2,451,239 - Psyr_2101 0.24 +1.6
2,451,239 - Psyr_2101 0.24 +0.1
2,451,239 - Psyr_2101 0.24 -0.7
2,451,239 - Psyr_2101 0.24 +0.6
2,451,239 - Psyr_2101 0.24 +0.6
2,451,239 - Psyr_2101 0.24 +0.8
2,451,239 - Psyr_2101 0.24 -0.5
2,451,239 - Psyr_2101 0.24 +0.9
2,451,239 - Psyr_2101 0.24 +1.4
2,451,239 - Psyr_2101 0.24 +1.6
2,451,239 - Psyr_2101 0.24 +1.7
2,451,239 - Psyr_2101 0.24 +0.7
2,451,239 - Psyr_2101 0.24 +0.6
2,451,405 + Psyr_2101 0.34 -0.5
2,451,406 - Psyr_2101 0.35 -0.5
2,451,505 + Psyr_2101 0.40 -0.0
2,451,505 + Psyr_2101 0.40 +1.3
2,451,505 + Psyr_2101 0.40 +0.8
2,451,506 - Psyr_2101 0.41 +0.7
2,451,506 - Psyr_2101 0.41 -0.2
2,451,506 - Psyr_2101 0.41 +1.6
2,451,508 + Psyr_2101 0.41 +1.0
2,451,508 + Psyr_2101 0.41 +2.3
2,451,537 + Psyr_2101 0.42 -0.7
2,451,537 + Psyr_2101 0.42 +3.4
2,451,537 + Psyr_2101 0.42 -0.8
2,451,537 + Psyr_2101 0.42 +0.9
2,451,538 - Psyr_2101 0.42 +0.8
2,451,681 + Psyr_2101 0.51 +0.2
2,451,681 + Psyr_2101 0.51 +0.0
2,451,681 + Psyr_2101 0.51 +0.3
2,451,681 + Psyr_2101 0.51 +0.5
2,451,681 + Psyr_2101 0.51 -0.1
2,451,681 + Psyr_2101 0.51 +0.7
2,451,682 - Psyr_2101 0.51 -0.4
2,451,682 - Psyr_2101 0.51 -0.1
2,451,682 - Psyr_2101 0.51 -0.1
2,451,682 - Psyr_2101 0.51 -0.3
2,451,682 - Psyr_2101 0.51 -0.2
2,451,682 - +1.0
2,451,682 - Psyr_2101 0.51 +1.0
2,451,682 - Psyr_2101 0.51 +0.5
2,452,016 - Psyr_2101 0.71 -1.1
2,452,030 + Psyr_2101 0.72 -1.1
2,452,031 - Psyr_2101 0.72 -2.3
2,452,031 - Psyr_2101 0.72 +2.0
2,452,031 - Psyr_2101 0.72 -1.0
2,452,291 + Psyr_2101 0.88 -1.1
2,452,292 - Psyr_2101 0.88 -0.2
2,452,294 + Psyr_2101 0.88 +0.8
2,452,295 - Psyr_2101 0.88 -1.0
2,452,295 - Psyr_2101 0.88 +0.7
2,452,382 - +0.2
2,452,868 + Psyr_2102 0.30 +0.4
2,452,868 + Psyr_2102 0.30 -0.4
2,452,868 + Psyr_2102 0.30 -0.8
2,452,869 - Psyr_2102 0.30 +0.8
2,452,869 - Psyr_2102 0.30 +0.5
2,452,869 - Psyr_2102 0.30 +0.4
2,452,869 - Psyr_2102 0.30 -2.0
2,452,869 - Psyr_2102 0.30 -0.5
2,452,869 - Psyr_2102 0.30 -0.5
2,452,869 - Psyr_2102 0.30 +3.6
2,452,869 - Psyr_2102 0.30 +0.8
2,452,869 - Psyr_2102 0.30 +0.2
2,452,869 - Psyr_2102 0.30 +0.4
2,452,964 + Psyr_2102 0.38 -0.8
2,452,965 - Psyr_2102 0.38 +0.5
2,452,965 - Psyr_2102 0.38 -1.8
2,452,965 - Psyr_2102 0.38 +0.7
2,452,965 - Psyr_2102 0.38 +0.2
2,452,965 - Psyr_2102 0.38 +0.7
2,452,965 - Psyr_2102 0.38 -0.3
2,452,965 - Psyr_2102 0.38 +1.0
2,452,968 - Psyr_2102 0.39 -0.8
2,453,009 + Psyr_2102 0.42 +0.3
2,453,061 - Psyr_2102 0.46 +0.3
2,453,263 + Psyr_2102 0.63 -0.2
2,453,263 + Psyr_2102 0.63 +1.0
2,453,264 - Psyr_2102 0.63 +0.0
2,453,264 - Psyr_2102 0.63 +0.4

Or see this region's nucleotide sequence