Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_RNA36 and Psyr_RNA37 are separated by 88 nucleotides Psyr_RNA37 and Psyr_RNA38 are separated by 51 nucleotides Psyr_RNA38 and Psyr_RNA39 are separated by 46 nucleotides Psyr_RNA39 and Psyr_1978 are separated by 521 nucleotides Psyr_1978 and Psyr_1979 are separated by 29 nucleotides
Psyr_RNA36: Psyr_RNA36 - tRNA-Ala, at 2,296,343 to 2,296,418
_RNA36
Psyr_RNA37: Psyr_RNA37 - tRNA-Glu, at 2,296,507 to 2,296,582
_RNA37
Psyr_RNA38: Psyr_RNA38 - tRNA-Ala, at 2,296,634 to 2,296,709
_RNA38
Psyr_RNA39: Psyr_RNA39 - tRNA-Glu, at 2,296,756 to 2,296,831
_RNA39
Psyr_1978: Psyr_1978 - Thioesterase superfamily, at 2,297,353 to 2,297,814
_1978
Psyr_1979: Psyr_1979 - tRNA-U20a,U20b-dihydrouridine synthase, at 2,297,844 to 2,298,809
_1979
Position (kb)
2297
2298 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2296.442 kb on + strand at 2296.891 kb on + strand at 2296.922 kb on + strand at 2296.927 kb on - strand at 2296.927 kb on - strand at 2297.003 kb on - strand at 2297.003 kb on - strand at 2297.003 kb on - strand at 2297.060 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.062 kb on + strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.063 kb on - strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.066 kb on + strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.067 kb on - strand at 2297.103 kb on + strand at 2297.103 kb on + strand at 2297.103 kb on + strand at 2297.103 kb on + strand at 2297.103 kb on + strand at 2297.104 kb on - strand at 2297.104 kb on - strand at 2297.104 kb on - strand at 2297.104 kb on - strand at 2297.104 kb on - strand at 2297.183 kb on - strand at 2297.241 kb on - strand at 2297.241 kb on - strand at 2297.334 kb on + strand at 2297.334 kb on + strand at 2297.334 kb on + strand at 2297.335 kb on - strand at 2297.335 kb on - strand at 2297.335 kb on - strand at 2297.335 kb on - strand at 2297.335 kb on - strand at 2297.335 kb on - strand at 2297.443 kb on + strand, within Psyr_1978 at 2297.443 kb on + strand, within Psyr_1978 at 2297.443 kb on + strand, within Psyr_1978 at 2297.443 kb on + strand, within Psyr_1978 at 2297.443 kb on + strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.444 kb on - strand, within Psyr_1978 at 2297.762 kb on - strand, within Psyr_1978 at 2297.812 kb on + strand at 2297.977 kb on - strand, within Psyr_1979 at 2297.977 kb on - strand, within Psyr_1979 at 2297.977 kb on - strand, within Psyr_1979 at 2297.982 kb on + strand, within Psyr_1979 at 2297.982 kb on + strand, within Psyr_1979 at 2297.982 kb on + strand, within Psyr_1979 at 2297.982 kb on + strand, within Psyr_1979 at 2297.982 kb on + strand, within Psyr_1979 at 2297.982 kb on + strand, within Psyr_1979 at 2297.983 kb on - strand, within Psyr_1979 at 2297.983 kb on - strand, within Psyr_1979 at 2297.983 kb on - strand, within Psyr_1979 at 2297.983 kb on - strand, within Psyr_1979 at 2297.983 kb on - strand, within Psyr_1979 at 2297.988 kb on + strand, within Psyr_1979 at 2297.988 kb on + strand, within Psyr_1979 at 2297.988 kb on + strand, within Psyr_1979 at 2297.989 kb on - strand, within Psyr_1979 at 2297.989 kb on - strand, within Psyr_1979 at 2297.989 kb on - strand, within Psyr_1979 at 2297.989 kb on - strand, within Psyr_1979 at 2297.989 kb on - strand, within Psyr_1979 at 2298.029 kb on + strand, within Psyr_1979 at 2298.244 kb on + strand, within Psyr_1979 at 2298.369 kb on + strand, within Psyr_1979 at 2298.369 kb on + strand, within Psyr_1979 at 2298.731 kb on + strand at 2298.731 kb on + strand at 2298.731 kb on + strand at 2298.732 kb on - strand at 2298.732 kb on - strand at 2298.769 kb on + strand at 2298.770 kb on - strand at 2298.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 2,296,442 + -0.1 2,296,891 + +0.3 2,296,922 + -0.2 2,296,927 - -0.4 2,296,927 - -1.2 2,297,003 - -2.3 2,297,003 - -2.6 2,297,003 - +1.3 2,297,060 + -1.2 2,297,062 + +1.1 2,297,062 + -0.6 2,297,062 + -1.4 2,297,062 + +0.6 2,297,062 + +1.1 2,297,062 + -1.0 2,297,062 + -1.7 2,297,062 + +0.1 2,297,062 + -1.4 2,297,062 + -0.7 2,297,062 + +0.2 2,297,062 + -0.4 2,297,062 + -1.7 2,297,062 + -2.2 2,297,062 + -1.2 2,297,063 - +0.4 2,297,063 - +0.7 2,297,063 - -1.2 2,297,063 - -1.5 2,297,063 - +0.5 2,297,063 - -1.4 2,297,063 - -0.6 2,297,063 - +0.1 2,297,063 - -0.2 2,297,063 - -0.8 2,297,063 - -0.2 2,297,063 - +1.1 2,297,063 - +0.5 2,297,063 - -1.1 2,297,063 - -0.7 2,297,063 - +0.1 2,297,063 - -0.7 2,297,063 - -1.4 2,297,063 - +0.8 2,297,063 - -0.7 2,297,066 + +0.5 2,297,066 + +0.1 2,297,066 + -2.0 2,297,066 + -0.2 2,297,066 + -0.0 2,297,066 + +0.6 2,297,066 + +1.0 2,297,067 - -0.1 2,297,067 - +0.1 2,297,067 - +0.6 2,297,067 - -0.7 2,297,067 - +1.1 2,297,067 - +0.1 2,297,067 - +0.0 2,297,067 - +2.7 2,297,067 - -2.2 2,297,067 - +0.3 2,297,067 - -0.2 2,297,067 - +0.4 2,297,067 - -1.0 2,297,067 - -0.9 2,297,067 - +0.3 2,297,103 + +0.1 2,297,103 + -0.2 2,297,103 + +0.6 2,297,103 + +0.8 2,297,103 + +0.0 2,297,104 - -0.0 2,297,104 - -2.7 2,297,104 - +0.7 2,297,104 - -0.8 2,297,104 - -2.3 2,297,183 - +0.3 2,297,241 - -0.0 2,297,241 - -0.4 2,297,334 + +1.1 2,297,334 + -0.3 2,297,334 + -1.4 2,297,335 - +1.7 2,297,335 - -0.2 2,297,335 - +1.5 2,297,335 - +1.3 2,297,335 - +0.1 2,297,335 - -0.1 2,297,443 + Psyr_1978 0.19 -2.0 2,297,443 + Psyr_1978 0.19 +0.1 2,297,443 + Psyr_1978 0.19 -0.9 2,297,443 + Psyr_1978 0.19 +0.1 2,297,443 + Psyr_1978 0.19 -0.3 2,297,444 - Psyr_1978 0.20 -1.9 2,297,444 - Psyr_1978 0.20 -0.9 2,297,444 - Psyr_1978 0.20 -1.0 2,297,444 - Psyr_1978 0.20 -0.4 2,297,444 - Psyr_1978 0.20 -0.2 2,297,444 - Psyr_1978 0.20 -0.3 2,297,444 - Psyr_1978 0.20 -1.7 2,297,444 - Psyr_1978 0.20 -2.3 2,297,444 - Psyr_1978 0.20 -0.6 2,297,444 - Psyr_1978 0.20 +0.6 2,297,444 - Psyr_1978 0.20 -0.0 2,297,444 - Psyr_1978 0.20 +0.3 2,297,762 - Psyr_1978 0.89 -0.9 2,297,812 + -0.2 2,297,977 - Psyr_1979 0.14 +2.1 2,297,977 - Psyr_1979 0.14 -2.0 2,297,977 - Psyr_1979 0.14 +0.7 2,297,982 + Psyr_1979 0.14 -0.6 2,297,982 + Psyr_1979 0.14 -2.3 2,297,982 + Psyr_1979 0.14 -0.4 2,297,982 + Psyr_1979 0.14 -0.4 2,297,982 + Psyr_1979 0.14 -0.1 2,297,982 + Psyr_1979 0.14 +0.3 2,297,983 - Psyr_1979 0.14 -0.0 2,297,983 - Psyr_1979 0.14 +0.5 2,297,983 - Psyr_1979 0.14 -2.6 2,297,983 - Psyr_1979 0.14 +0.0 2,297,983 - Psyr_1979 0.14 -1.7 2,297,988 + Psyr_1979 0.15 -0.9 2,297,988 + Psyr_1979 0.15 -1.4 2,297,988 + Psyr_1979 0.15 -0.9 2,297,989 - Psyr_1979 0.15 -3.0 2,297,989 - Psyr_1979 0.15 -0.0 2,297,989 - Psyr_1979 0.15 -1.1 2,297,989 - Psyr_1979 0.15 +1.0 2,297,989 - Psyr_1979 0.15 -1.0 2,298,029 + Psyr_1979 0.19 +0.6 2,298,244 + Psyr_1979 0.41 +0.8 2,298,369 + Psyr_1979 0.54 -0.4 2,298,369 + Psyr_1979 0.54 +0.1 2,298,731 + +1.0 2,298,731 + +0.6 2,298,731 + -1.3 2,298,732 - -1.4 2,298,732 - -0.6 2,298,769 + +0.3 2,298,770 - +1.9 2,298,770 - -0.4
Or see this region's nucleotide sequence