Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1978

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_RNA36 and Psyr_RNA37 are separated by 88 nucleotidesPsyr_RNA37 and Psyr_RNA38 are separated by 51 nucleotidesPsyr_RNA38 and Psyr_RNA39 are separated by 46 nucleotidesPsyr_RNA39 and Psyr_1978 are separated by 521 nucleotidesPsyr_1978 and Psyr_1979 are separated by 29 nucleotides Psyr_RNA36: Psyr_RNA36 - tRNA-Ala, at 2,296,343 to 2,296,418 _RNA36 Psyr_RNA37: Psyr_RNA37 - tRNA-Glu, at 2,296,507 to 2,296,582 _RNA37 Psyr_RNA38: Psyr_RNA38 - tRNA-Ala, at 2,296,634 to 2,296,709 _RNA38 Psyr_RNA39: Psyr_RNA39 - tRNA-Glu, at 2,296,756 to 2,296,831 _RNA39 Psyr_1978: Psyr_1978 - Thioesterase superfamily, at 2,297,353 to 2,297,814 _1978 Psyr_1979: Psyr_1979 - tRNA-U20a,U20b-dihydrouridine synthase, at 2,297,844 to 2,298,809 _1979 Position (kb) 2297 2298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2296.442 kb on + strandat 2296.891 kb on + strandat 2296.922 kb on + strandat 2296.927 kb on - strandat 2296.927 kb on - strandat 2297.003 kb on - strandat 2297.003 kb on - strandat 2297.003 kb on - strandat 2297.060 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.062 kb on + strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.063 kb on - strandat 2297.066 kb on + strandat 2297.066 kb on + strandat 2297.066 kb on + strandat 2297.066 kb on + strandat 2297.066 kb on + strandat 2297.066 kb on + strandat 2297.066 kb on + strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.067 kb on - strandat 2297.103 kb on + strandat 2297.103 kb on + strandat 2297.103 kb on + strandat 2297.103 kb on + strandat 2297.103 kb on + strandat 2297.104 kb on - strandat 2297.104 kb on - strandat 2297.104 kb on - strandat 2297.104 kb on - strandat 2297.104 kb on - strandat 2297.183 kb on - strandat 2297.241 kb on - strandat 2297.241 kb on - strandat 2297.334 kb on + strandat 2297.334 kb on + strandat 2297.334 kb on + strandat 2297.335 kb on - strandat 2297.335 kb on - strandat 2297.335 kb on - strandat 2297.335 kb on - strandat 2297.335 kb on - strandat 2297.335 kb on - strandat 2297.443 kb on + strand, within Psyr_1978at 2297.443 kb on + strand, within Psyr_1978at 2297.443 kb on + strand, within Psyr_1978at 2297.443 kb on + strand, within Psyr_1978at 2297.443 kb on + strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.444 kb on - strand, within Psyr_1978at 2297.762 kb on - strand, within Psyr_1978at 2297.812 kb on + strandat 2297.977 kb on - strand, within Psyr_1979at 2297.977 kb on - strand, within Psyr_1979at 2297.977 kb on - strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.982 kb on + strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.983 kb on - strand, within Psyr_1979at 2297.988 kb on + strand, within Psyr_1979at 2297.988 kb on + strand, within Psyr_1979at 2297.988 kb on + strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2297.989 kb on - strand, within Psyr_1979at 2298.029 kb on + strand, within Psyr_1979at 2298.244 kb on + strand, within Psyr_1979at 2298.369 kb on + strand, within Psyr_1979at 2298.369 kb on + strand, within Psyr_1979at 2298.731 kb on + strandat 2298.731 kb on + strandat 2298.731 kb on + strandat 2298.732 kb on - strandat 2298.732 kb on - strandat 2298.769 kb on + strandat 2298.770 kb on - strandat 2298.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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2,296,442 + -0.1
2,296,891 + +0.3
2,296,922 + -0.2
2,296,927 - -0.4
2,296,927 - -1.2
2,297,003 - -2.3
2,297,003 - -2.6
2,297,003 - +1.3
2,297,060 + -1.2
2,297,062 + +1.1
2,297,062 + -0.6
2,297,062 + -1.4
2,297,062 + +0.6
2,297,062 + +1.1
2,297,062 + -1.0
2,297,062 + -1.7
2,297,062 + +0.1
2,297,062 + -1.4
2,297,062 + -0.7
2,297,062 + +0.2
2,297,062 + -0.4
2,297,062 + -1.7
2,297,062 + -2.2
2,297,062 + -1.2
2,297,063 - +0.4
2,297,063 - +0.7
2,297,063 - -1.2
2,297,063 - -1.5
2,297,063 - +0.5
2,297,063 - -1.4
2,297,063 - -0.6
2,297,063 - +0.1
2,297,063 - -0.2
2,297,063 - -0.8
2,297,063 - -0.2
2,297,063 - +1.1
2,297,063 - +0.5
2,297,063 - -1.1
2,297,063 - -0.7
2,297,063 - +0.1
2,297,063 - -0.7
2,297,063 - -1.4
2,297,063 - +0.8
2,297,063 - -0.7
2,297,066 + +0.5
2,297,066 + +0.1
2,297,066 + -2.0
2,297,066 + -0.2
2,297,066 + -0.0
2,297,066 + +0.6
2,297,066 + +1.0
2,297,067 - -0.1
2,297,067 - +0.1
2,297,067 - +0.6
2,297,067 - -0.7
2,297,067 - +1.1
2,297,067 - +0.1
2,297,067 - +0.0
2,297,067 - +2.7
2,297,067 - -2.2
2,297,067 - +0.3
2,297,067 - -0.2
2,297,067 - +0.4
2,297,067 - -1.0
2,297,067 - -0.9
2,297,067 - +0.3
2,297,103 + +0.1
2,297,103 + -0.2
2,297,103 + +0.6
2,297,103 + +0.8
2,297,103 + +0.0
2,297,104 - -0.0
2,297,104 - -2.7
2,297,104 - +0.7
2,297,104 - -0.8
2,297,104 - -2.3
2,297,183 - +0.3
2,297,241 - -0.0
2,297,241 - -0.4
2,297,334 + +1.1
2,297,334 + -0.3
2,297,334 + -1.4
2,297,335 - +1.7
2,297,335 - -0.2
2,297,335 - +1.5
2,297,335 - +1.3
2,297,335 - +0.1
2,297,335 - -0.1
2,297,443 + Psyr_1978 0.19 -2.0
2,297,443 + Psyr_1978 0.19 +0.1
2,297,443 + Psyr_1978 0.19 -0.9
2,297,443 + Psyr_1978 0.19 +0.1
2,297,443 + Psyr_1978 0.19 -0.3
2,297,444 - Psyr_1978 0.20 -1.9
2,297,444 - Psyr_1978 0.20 -0.9
2,297,444 - Psyr_1978 0.20 -1.0
2,297,444 - Psyr_1978 0.20 -0.4
2,297,444 - Psyr_1978 0.20 -0.2
2,297,444 - Psyr_1978 0.20 -0.3
2,297,444 - Psyr_1978 0.20 -1.7
2,297,444 - Psyr_1978 0.20 -2.3
2,297,444 - Psyr_1978 0.20 -0.6
2,297,444 - Psyr_1978 0.20 +0.6
2,297,444 - Psyr_1978 0.20 -0.0
2,297,444 - Psyr_1978 0.20 +0.3
2,297,762 - Psyr_1978 0.89 -0.9
2,297,812 + -0.2
2,297,977 - Psyr_1979 0.14 +2.1
2,297,977 - Psyr_1979 0.14 -2.0
2,297,977 - Psyr_1979 0.14 +0.7
2,297,982 + Psyr_1979 0.14 -0.6
2,297,982 + Psyr_1979 0.14 -2.3
2,297,982 + Psyr_1979 0.14 -0.4
2,297,982 + Psyr_1979 0.14 -0.4
2,297,982 + Psyr_1979 0.14 -0.1
2,297,982 + Psyr_1979 0.14 +0.3
2,297,983 - Psyr_1979 0.14 -0.0
2,297,983 - Psyr_1979 0.14 +0.5
2,297,983 - Psyr_1979 0.14 -2.6
2,297,983 - Psyr_1979 0.14 +0.0
2,297,983 - Psyr_1979 0.14 -1.7
2,297,988 + Psyr_1979 0.15 -0.9
2,297,988 + Psyr_1979 0.15 -1.4
2,297,988 + Psyr_1979 0.15 -0.9
2,297,989 - Psyr_1979 0.15 -3.0
2,297,989 - Psyr_1979 0.15 -0.0
2,297,989 - Psyr_1979 0.15 -1.1
2,297,989 - Psyr_1979 0.15 +1.0
2,297,989 - Psyr_1979 0.15 -1.0
2,298,029 + Psyr_1979 0.19 +0.6
2,298,244 + Psyr_1979 0.41 +0.8
2,298,369 + Psyr_1979 0.54 -0.4
2,298,369 + Psyr_1979 0.54 +0.1
2,298,731 + +1.0
2,298,731 + +0.6
2,298,731 + -1.3
2,298,732 - -1.4
2,298,732 - -0.6
2,298,769 + +0.3
2,298,770 - +1.9
2,298,770 - -0.4

Or see this region's nucleotide sequence