Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1960

Experiment: KB with Acriflavine 7.75 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acriflavine 7.75 ug/ml
2,258,321	+		Psyr_1959	0.85	+0.3
2,258,330	+		Psyr_1959	0.85	-0.2
2,258,486	+		Psyr_1959	0.88	-0.5
2,258,486	+		Psyr_1959	0.88	+0.4
2,258,487	-		Psyr_1959	0.88	+0.1
2,258,591	+		Psyr_1959	0.89	-1.5
2,258,787	-				-0.0
2,258,861	+				-2.3
2,258,973	-				-0.9
2,259,420	-				-0.9
2,259,432	+				-0.2
2,259,615	+				+1.8
2,259,615	+				-2.2
2,259,778	+				-0.9
2,259,779	-				-0.5
2,259,779	-				+0.1
2,260,588	-		Psyr_1960	0.15	-0.5
2,260,862	+		Psyr_1960	0.19	-1.5
2,261,064	+		Psyr_1960	0.21	-1.9
2,261,064	+		Psyr_1960	0.21	+0.9
2,261,190	+		Psyr_1960	0.22	+0.1
2,261,190	+		Psyr_1960	0.22	+0.1
2,261,191	-		Psyr_1960	0.22	+0.3
2,261,199	+		Psyr_1960	0.23	-0.7
2,261,199	+		Psyr_1960	0.23	+0.1
2,261,199	+		Psyr_1960	0.23	+1.1
2,261,199	+		Psyr_1960	0.23	-0.9
2,261,200	-		Psyr_1960	0.23	+1.1
2,261,200	-		Psyr_1960	0.23	-0.6
2,261,200	-		Psyr_1960	0.23	+1.1
2,261,200	-		Psyr_1960	0.23	+0.5
2,261,262	+		Psyr_1960	0.23	-1.5
2,261,262	+		Psyr_1960	0.23	+0.5
2,261,262	+		Psyr_1960	0.23	+0.9
2,261,262	+		Psyr_1960	0.23	+2.7
2,261,263	-		Psyr_1960	0.23	+0.4
2,261,437	-		Psyr_1960	0.25	+0.5
2,261,437	-		Psyr_1960	0.25	+0.8
2,261,437	-		Psyr_1960	0.25	+0.7
2,261,437	-		Psyr_1960	0.25	-1.1
2,261,461	+		Psyr_1960	0.26	+2.1
2,261,745	+		Psyr_1960	0.29	-0.6
2,261,784	+		Psyr_1960	0.29	+0.4
2,261,785	-		Psyr_1960	0.29	-0.0
2,261,785	-		Psyr_1960	0.29	-0.5
2,261,928	+		Psyr_1960	0.31	+0.3
2,262,966	+		Psyr_1960	0.43	+0.3
2,263,233	+		Psyr_1960	0.46	-0.9
2,263,569	+		Psyr_1960	0.50	-0.7
2,263,570	-		Psyr_1960	0.50	+0.6
2,263,698	+		Psyr_1960	0.51	-0.0
2,263,989	+		Psyr_1960	0.55	-1.5
2,263,989	+		Psyr_1960	0.55	-0.4
2,263,989	+		Psyr_1960	0.55	+0.1
2,263,990	-		Psyr_1960	0.55	-0.2
2,263,990	-		Psyr_1960	0.55	-1.3
2,263,990	-		Psyr_1960	0.55	+0.1
2,264,261	-		Psyr_1960	0.58	-2.9
2,264,295	+		Psyr_1960	0.58	-1.2
2,264,296	-		Psyr_1960	0.58	-0.5
2,264,296	-		Psyr_1960	0.58	-1.7
2,264,344	+		Psyr_1960	0.59	-1.2
2,264,409	+		Psyr_1960	0.60	-0.0
2,264,409	+		Psyr_1960	0.60	-1.2
2,264,409	+		Psyr_1960	0.60	-1.0
2,264,544	+		Psyr_1960	0.61	+1.1
2,264,545	-		Psyr_1960	0.61	+0.1
2,264,545	-		Psyr_1960	0.61	-0.3
2,264,913	-		Psyr_1960	0.65	-1.5
2,265,012	+		Psyr_1960	0.67	-1.0
2,265,013	-		Psyr_1960	0.67	-1.2
2,265,480	+		Psyr_1960	0.72	+0.4
2,265,480	+		Psyr_1960	0.72	-1.6
2,265,480	+		Psyr_1960	0.72	+2.7
2,265,481	-		Psyr_1960	0.72	+0.8
2,265,481	-		Psyr_1960	0.72	+0.7
2,265,502	-		Psyr_1960	0.72	-0.2
2,265,693	+		Psyr_1960	0.74	-0.2
2,265,693	+		Psyr_1960	0.74	+0.2
2,265,693	+		Psyr_1960	0.74	-0.9
2,265,694	-		Psyr_1960	0.74	-1.5
2,265,694	-		Psyr_1960	0.74	-0.9
2,266,281	+		Psyr_1960	0.81	+0.1
2,266,282	-		Psyr_1960	0.81	-1.2
2,266,282	-		Psyr_1960	0.81	+0.3
2,266,665	+		Psyr_1960	0.86	-1.3
2,266,665	+		Psyr_1960	0.86	+1.1
2,266,666	-		Psyr_1960	0.86	+2.5
2,266,666	-		Psyr_1960	0.86	-1.7
2,266,666	-		Psyr_1960	0.86	-1.2
2,266,776	+		Psyr_1960	0.87	-0.1
2,266,816	+		Psyr_1960	0.87	+0.9
2,266,816	+		Psyr_1960	0.87	-2.0
2,266,817	-		Psyr_1960	0.87	+1.1
2,266,817	-		Psyr_1960	0.87	+0.8
2,266,817	-		Psyr_1960	0.87	+0.1
2,267,048	+				+0.1
2,267,049	-				+0.2
2,267,100	+				-0.4
2,267,100	+				-0.1
2,267,100	+				+0.8
2,267,100	+				-1.2
2,267,101	-				-0.3
2,267,101	-				-0.5
2,267,107	-				-1.3
2,267,169	+				-2.7
2,267,170	-				-0.1
2,267,170	-				+0.1
2,267,217	+				-0.7
2,267,218	-				-0.9
2,267,220	+				+1.1
2,267,220	+				-0.9
2,267,220	+				+1.0
2,267,221	-				-0.2
2,267,221	-				-1.0
2,267,221	-				-0.0
2,267,260	-				+0.3
2,267,439	+				+2.1
2,267,440	-				+0.5
2,267,440	-				-0.3
2,267,977	+				-0.0
2,267,978	-				+0.7
2,268,024	-				-1.3
2,268,203	+				+1.5
2,268,203	+				+0.8
2,268,248	+				+0.6
2,268,248	+				-2.0
2,268,248	+				-0.5
2,268,257	+				-0.4
2,268,257	+				+0.7
2,268,257	+				+0.1
2,268,409	+				-1.7
2,268,436	+				+2.1
2,268,436	+				-0.4
2,268,436	+				+1.7
2,268,436	+				-0.5
2,268,436	+				+0.9
2,268,457	+				-1.0
2,268,490	+				+0.8
2,268,491	-				-0.6
2,268,494	-				-0.0
2,268,494	-				-0.2
2,268,685	+		Psyr_1961	0.11	-1.3
2,268,686	-		Psyr_1961	0.12	-0.5