Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1958

Experiment: KB with Acriflavine 7.75 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acriflavine 7.75 ug/ml
2,243,805	-		Psyr_1957	0.71	-1.2
2,243,805	-		Psyr_1957	0.71	+0.4
2,243,805	-		Psyr_1957	0.71	+2.0
2,243,805	-		Psyr_1957	0.71	-0.5
2,243,805	-		Psyr_1957	0.71	-0.1
2,243,821	+		Psyr_1957	0.71	-0.0
2,243,822	-		Psyr_1957	0.71	+1.5
2,243,992	+		Psyr_1957	0.76	+1.7
2,243,992	+		Psyr_1957	0.76	-0.9
2,244,140	-		Psyr_1957	0.81	-0.5
2,244,287	-		Psyr_1957	0.85	-1.3
2,244,379	+		Psyr_1957	0.88	+0.5
2,244,380	-		Psyr_1957	0.88	-0.4
2,244,380	-		Psyr_1957	0.88	-0.7
2,245,597	-		Psyr_1958	0.10	-0.1
2,245,597	-		Psyr_1958	0.10	-1.0
2,245,854	+		Psyr_1958	0.13	+0.8
2,245,854	+		Psyr_1958	0.13	-0.2
2,245,855	-		Psyr_1958	0.13	-0.3
2,246,139	+		Psyr_1958	0.17	-1.0
2,246,139	+		Psyr_1958	0.17	-1.7
2,246,523	+		Psyr_1958	0.22	-1.7
2,246,523	+		Psyr_1958	0.22	+0.9
2,246,523	+		Psyr_1958	0.22	-0.2
2,246,524	-		Psyr_1958	0.22	-1.3
2,246,524	-		Psyr_1958	0.22	-0.9
2,246,524	-		Psyr_1958	0.22	+0.7
2,246,524	-		Psyr_1958	0.22	-0.5
2,246,733	+		Psyr_1958	0.24	-1.6
2,246,979	+		Psyr_1958	0.27	-1.0
2,246,980	-		Psyr_1958	0.27	+0.5
2,246,980	-		Psyr_1958	0.27	+0.8
2,246,980	-		Psyr_1958	0.27	+0.1
2,246,980	-		Psyr_1958	0.27	-0.3
2,246,980	-		Psyr_1958	0.27	-0.2
2,247,065	-		Psyr_1958	0.28	+0.8
2,247,065	-		Psyr_1958	0.28	+0.3
2,247,065	-		Psyr_1958	0.28	-0.5
2,247,065	-		Psyr_1958	0.28	-1.7
2,247,065	-		Psyr_1958	0.28	-0.3
2,247,201	+		Psyr_1958	0.30	-0.0
2,247,201	+		Psyr_1958	0.30	+0.0
2,247,201	+		Psyr_1958	0.30	+0.7
2,247,201	+		Psyr_1958	0.30	+3.5
2,247,202	-		Psyr_1958	0.30	+1.4
2,247,202	-		Psyr_1958	0.30	+0.7
2,247,202	-		Psyr_1958	0.30	+1.1
2,247,202	-		Psyr_1958	0.30	+0.1
2,247,316	+		Psyr_1958	0.32	-0.9
2,247,316	+		Psyr_1958	0.32	-0.6
2,247,317	-		Psyr_1958	0.32	-1.3
2,247,317	-		Psyr_1958	0.32	+0.1
2,247,317	-		Psyr_1958	0.32	+0.1
2,247,454	-		Psyr_1958	0.33	+0.8
2,247,507	+		Psyr_1958	0.34	-0.1
2,247,507	+		Psyr_1958	0.34	+0.2
2,247,507	+		Psyr_1958	0.34	+0.5
2,247,507	+		Psyr_1958	0.34	-0.4
2,247,507	+		Psyr_1958	0.34	-1.0
2,247,507	+		Psyr_1958	0.34	+1.0
2,247,508	-		Psyr_1958	0.34	-0.1
2,247,508	-		Psyr_1958	0.34	+0.4
2,247,508	-		Psyr_1958	0.34	-0.5
2,247,537	+		Psyr_1958	0.34	-2.0
2,247,538	-		Psyr_1958	0.34	+0.8
2,247,813	+		Psyr_1958	0.38	-0.6
2,247,888	+		Psyr_1958	0.39	-0.9
2,247,889	-		Psyr_1958	0.39	-2.1
2,247,889	-		Psyr_1958	0.39	-1.1
2,247,889	-		Psyr_1958	0.39	-1.9
2,249,232	+		Psyr_1958	0.55	+1.5
2,249,232	+		Psyr_1958	0.55	-2.2
2,249,232	+		Psyr_1958	0.55	+0.3
2,249,232	+		Psyr_1958	0.55	-1.4
2,249,233	-		Psyr_1958	0.56	+0.1
2,249,299	-		Psyr_1958	0.56	-0.2
2,249,475	+		Psyr_1958	0.59	-0.5
2,249,475	+		Psyr_1958	0.59	-1.2
2,249,476	-		Psyr_1958	0.59	-0.5
2,249,648	+		Psyr_1958	0.61	+0.5
2,249,653	-		Psyr_1958	0.61	-0.8
2,249,718	+		Psyr_1958	0.62	-0.9
2,249,718	+		Psyr_1958	0.62	-0.9
2,249,718	+		Psyr_1958	0.62	-1.5
2,249,719	-		Psyr_1958	0.62	-0.9
2,249,719	-		Psyr_1958	0.62	+0.1
2,249,719	-		Psyr_1958	0.62	-2.8
2,249,719	-		Psyr_1958	0.62	-0.2
2,249,719	-		Psyr_1958	0.62	-0.5
2,250,024	+		Psyr_1958	0.65	+0.1
2,250,024	+		Psyr_1958	0.65	-1.3
2,250,024	+		Psyr_1958	0.65	-0.9
2,250,025	-		Psyr_1958	0.65	-0.5
2,250,138	+		Psyr_1958	0.67	-2.0
2,250,138	+		Psyr_1958	0.67	-2.2
2,250,138	+		Psyr_1958	0.67	-1.7
2,250,138	+		Psyr_1958	0.67	+1.7
2,250,139	-		Psyr_1958	0.67	+1.4
2,250,139	-		Psyr_1958	0.67	-0.1
2,250,273	+		Psyr_1958	0.69	-1.0
2,250,274	-		Psyr_1958	0.69	-0.5
2,250,274	-		Psyr_1958	0.69	+0.4
2,250,274	-		Psyr_1958	0.69	-1.3
2,250,274	-		Psyr_1958	0.69	-1.5
2,250,347	+		Psyr_1958	0.69	-2.0
2,250,348	-		Psyr_1958	0.69	-1.3
2,250,388	-		Psyr_1958	0.70	-0.1
2,250,591	+		Psyr_1958	0.72	+0.5
2,250,591	+		Psyr_1958	0.72	+0.4
2,251,180	-		Psyr_1958	0.80	+1.1
2,251,180	-		Psyr_1958	0.80	-0.7
2,251,384	-		Psyr_1958	0.82	-0.9
2,251,393	-		Psyr_1958	0.83	-2.0
2,251,393	-		Psyr_1958	0.83	-0.9
2,251,825	-		Psyr_1958	0.88	+1.5
2,252,137	-				-1.6
2,252,325	-				-0.5
2,252,356	-				-0.2
2,252,356	-				+0.5
2,252,356	-				-0.2
2,253,006	-				+0.1
2,253,209	+				+0.1
2,253,225	+				-0.3
2,253,225	+				+0.6
2,253,225	+				+0.4
2,253,226	-				+0.5
2,253,300	+				+0.1
2,253,300	+				+1.3
2,253,300	+				+1.0
2,253,300	+				+1.1
2,253,301	-				-0.5
2,253,301	-				+1.8
2,253,301	-				-2.5
2,253,301	-				-0.5
2,253,377	+				+3.1
2,253,575	+		Psyr_1959	0.12	-0.5
2,253,575	+		Psyr_1959	0.12	+0.1
2,253,723	+		Psyr_1959	0.14	-0.5
2,253,724	-		Psyr_1959	0.14	+0.0
2,253,724	-		Psyr_1959	0.14	-0.5
2,253,724	-		Psyr_1959	0.14	+0.6