Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1683

Experiment: KB with Acriflavine 7.75 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acriflavine 7.75 ug/ml
1,890,570	+		Psyr_1682	0.39	+0.4
1,890,570	+		Psyr_1682	0.39	-0.1
1,890,571	-		Psyr_1682	0.39	-2.2
1,890,660	+		Psyr_1682	0.46	-0.4
1,890,660	+		Psyr_1682	0.46	+0.2
1,890,661	-		Psyr_1682	0.46	-0.5
1,890,872	+		Psyr_1682	0.62	-0.1
1,890,873	-		Psyr_1682	0.63	-1.4
1,890,939	+		Psyr_1682	0.68	-0.8
1,890,939	+		Psyr_1682	0.68	+0.6
1,890,939	+		Psyr_1682	0.68	+0.4
1,890,939	+		Psyr_1682	0.68	+0.8
1,890,939	+		Psyr_1682	0.68	+0.9
1,890,939	+		Psyr_1682	0.68	+3.4
1,890,939	+		Psyr_1682	0.68	+0.5
1,890,939	+		Psyr_1682	0.68	+0.9
1,890,939	+		Psyr_1682	0.68	-1.2
1,890,940	-		Psyr_1682	0.68	+0.8
1,890,940	-		Psyr_1682	0.68	+0.9
1,890,940	-		Psyr_1682	0.68	+0.2
1,890,940	-		Psyr_1682	0.68	-0.3
1,890,940	-				-1.1
1,891,158	+		Psyr_1682	0.85	+1.7
1,891,159	-		Psyr_1682	0.85	+0.5
1,891,159	-		Psyr_1682	0.85	+0.2
1,891,159	-		Psyr_1682	0.85	+0.4
1,891,159	-		Psyr_1682	0.85	-0.9
1,891,159	-		Psyr_1682	0.85	-1.1
1,891,259	+				+0.1
1,891,260	-				-0.4
1,891,260	-				+0.8
1,891,273	-				+0.3
1,891,273	-				-2.2
1,891,273	-				-0.5
1,891,275	+				-0.8
1,891,275	+				+2.5
1,891,276	-				-0.3
1,891,276	-				-0.2
1,891,456	+		Psyr_1683	0.14	-1.9
1,891,528	-		Psyr_1683	0.21	-1.2
1,891,528	-		Psyr_1683	0.21	-0.9
1,891,529	+		Psyr_1683	0.21	-1.7
1,891,529	+		Psyr_1683	0.21	-1.6
1,891,529	+		Psyr_1683	0.21	-0.7
1,891,529	+		Psyr_1683	0.21	-0.1
1,891,529	+		Psyr_1683	0.21	+0.3
1,891,529	+		Psyr_1683	0.21	+1.3
1,891,530	-		Psyr_1683	0.22	-0.1
1,891,530	-		Psyr_1683	0.22	+0.1
1,891,530	-		Psyr_1683	0.22	-0.8
1,891,530	-		Psyr_1683	0.22	-1.7
1,891,530	-		Psyr_1683	0.22	+0.6
1,891,530	-		Psyr_1683	0.22	-0.1
1,891,530	-		Psyr_1683	0.22	-0.2
1,891,621	+		Psyr_1683	0.31	-0.9
1,891,621	+		Psyr_1683	0.31	+0.2
1,891,889	+		Psyr_1683	0.58	+0.5
1,892,000	-		Psyr_1683	0.69	+1.2
1,892,293	+				+0.7
1,892,356	+				-0.4
1,892,356	+				-0.1
1,892,356	+				-2.9
1,892,356	+				-0.1
1,892,357	-				-0.1
1,892,357	-				-0.4
1,892,357	-				+0.1
1,892,398	+				+0.8
1,892,399	-				-0.5
1,892,429	-				+0.3
1,892,448	-				-0.1
1,892,490	+				-1.3
1,892,491	-				+0.1
1,892,491	-				-0.4
1,892,492	+				+0.1
1,892,492	+				-0.4
1,892,493	-				-0.1
1,892,493	-				-1.9
1,892,493	-				-2.5
1,892,493	-				-1.2
1,892,493	-				-2.8
1,892,493	-				-1.5
1,892,493	-				-1.1
1,892,611	+				+0.9
1,892,611	+				-0.7
1,892,611	+				-0.3
1,892,611	+				-0.8
1,892,611	+				+1.9
1,892,611	+				-1.4
1,892,611	+				-0.2
1,892,612	-				+0.0
1,892,612	-				-0.1
1,892,612	-				-1.0
1,892,612	-				+0.4
1,892,612	-				+0.6
1,892,612	-				-0.7
1,892,612	-				-1.2
1,892,612	-				+1.9
1,892,612	-				-0.7
1,892,612	-				-1.1
1,892,613	+				-0.7
1,892,613	+				-2.0
1,892,613	+				-0.8
1,892,614	-				+0.4
1,892,614	-				-0.4
1,892,615	+				-1.1
1,892,615	+				+1.4
1,892,615	+				-1.2
1,892,615	+				-1.9
1,892,615	+				-1.5
1,892,615	+				+1.2
1,892,615	+				-1.1
1,892,615	+				+0.6
1,892,615	+				+1.9
1,892,615	+				-1.1
1,892,615	+				-0.9
1,892,616	-				+0.5
1,892,616	-				-0.8
1,892,616	-				+0.4
1,892,616	-				+1.5
1,892,672	+				-0.4
1,892,738	+				+0.9
1,892,738	+				-1.9
1,892,738	+				+0.2
1,892,738	+				+0.9
1,892,738	+				+0.6
1,892,738	+				+0.1
1,892,738	+				+0.8
1,892,739	-				-1.1
1,892,739	-				+1.7
1,892,879	+		Psyr_1684	0.19	-0.3
1,892,879	+		Psyr_1684	0.19	+2.1
1,892,879	+		Psyr_1684	0.19	-1.7
1,892,879	+		Psyr_1684	0.19	+0.0
1,892,879	+		Psyr_1684	0.19	-1.5
1,892,879	+		Psyr_1684	0.19	-3.2
1,892,880	-		Psyr_1684	0.19	-0.7
1,892,880	-		Psyr_1684	0.19	-1.9
1,892,880	-		Psyr_1684	0.19	-0.5
1,892,880	-		Psyr_1684	0.19	-1.2
1,892,880	-		Psyr_1684	0.19	-0.1
1,892,935	+		Psyr_1684	0.25	+0.4
1,892,935	+		Psyr_1684	0.25	-0.1
1,892,935	+		Psyr_1684	0.25	+1.2
1,892,936	-		Psyr_1684	0.25	-0.1
1,892,936	-		Psyr_1684	0.25	-0.8
1,892,985	-		Psyr_1684	0.29	-0.1
1,893,012	+		Psyr_1684	0.32	-0.2
1,893,012	+		Psyr_1684	0.32	+0.3
1,893,012	+		Psyr_1684	0.32	-0.7
1,893,012	+		Psyr_1684	0.32	-0.5
1,893,013	-		Psyr_1684	0.32	-0.9
1,893,013	-		Psyr_1684	0.32	-0.8
1,893,013	-		Psyr_1684	0.32	+0.4
1,893,013	-		Psyr_1684	0.32	-0.1
1,893,024	+		Psyr_1684	0.33	-0.5
1,893,053	+		Psyr_1684	0.36	-0.9
1,893,053	+		Psyr_1684	0.36	-1.4
1,893,054	-		Psyr_1684	0.36	+0.1
1,893,054	-		Psyr_1684	0.36	-0.3
1,893,054	-		Psyr_1684	0.36	-1.6
1,893,155	+		Psyr_1684	0.45	+0.6
1,893,155	+		Psyr_1684	0.45	-0.1
1,893,155	+		Psyr_1684	0.45	-0.9
1,893,156	-		Psyr_1684	0.45	-0.3
1,893,156	-		Psyr_1684	0.45	-0.3
1,893,156	-		Psyr_1684	0.45	-0.5
1,893,159	+		Psyr_1684	0.46	-0.3
1,893,159	+		Psyr_1684	0.46	-0.7
1,893,159	+		Psyr_1684	0.46	-0.1
1,893,159	+		Psyr_1684	0.46	+1.7
1,893,160	-		Psyr_1684	0.46	-0.3
1,893,160	-		Psyr_1684	0.46	+1.9
1,893,160	-		Psyr_1684	0.46	-2.0
1,893,160	-		Psyr_1684	0.46	+0.9
1,893,160	-		Psyr_1684	0.46	-1.1
1,893,160	-		Psyr_1684	0.46	+0.3