Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1339

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1336 and Psyr_1337 are separated by 47 nucleotidesPsyr_1337 and Psyr_1338 are separated by 169 nucleotidesPsyr_1338 and Psyr_1339 are separated by 149 nucleotidesPsyr_1339 and Psyr_1340 are separated by 146 nucleotides Psyr_1336: Psyr_1336 - tetrahydrodipicolinate succinylase, putative, at 1,515,149 to 1,516,183 _1336 Psyr_1337: Psyr_1337 - Conserved hypothetical protein ArsC related protein, at 1,516,231 to 1,516,578 _1337 Psyr_1338: Psyr_1338 - Hypothetical protein, at 1,516,748 to 1,516,984 _1338 Psyr_1339: Psyr_1339 - conserved hypothetical protein, at 1,517,134 to 1,517,967 _1339 Psyr_1340: Psyr_1340 - Aminotransferase, class I and II, at 1,518,114 to 1,519,307 _1340 Position (kb) 1517 1518Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1516.186 kb on - strandat 1516.238 kb on - strandat 1516.251 kb on - strandat 1516.340 kb on - strand, within Psyr_1337at 1516.481 kb on + strand, within Psyr_1337at 1516.482 kb on - strand, within Psyr_1337at 1516.482 kb on - strand, within Psyr_1337at 1516.524 kb on + strand, within Psyr_1337at 1516.525 kb on - strand, within Psyr_1337at 1516.525 kb on - strand, within Psyr_1337at 1516.564 kb on + strandat 1516.565 kb on - strandat 1516.565 kb on - strandat 1516.571 kb on + strandat 1516.571 kb on + strandat 1516.571 kb on + strandat 1516.571 kb on + strandat 1516.571 kb on + strandat 1516.572 kb on - strandat 1516.572 kb on - strandat 1516.572 kb on - strandat 1516.583 kb on + strandat 1516.583 kb on + strandat 1516.648 kb on + strandat 1516.649 kb on - strandat 1516.649 kb on - strandat 1516.673 kb on + strandat 1516.730 kb on + strandat 1516.780 kb on + strand, within Psyr_1338at 1516.780 kb on + strand, within Psyr_1338at 1516.780 kb on + strand, within Psyr_1338at 1516.780 kb on + strand, within Psyr_1338at 1516.781 kb on - strand, within Psyr_1338at 1516.781 kb on - strand, within Psyr_1338at 1516.781 kb on - strand, within Psyr_1338at 1516.781 kb on - strand, within Psyr_1338at 1516.810 kb on + strand, within Psyr_1338at 1516.810 kb on + strand, within Psyr_1338at 1516.811 kb on - strand, within Psyr_1338at 1516.811 kb on - strand, within Psyr_1338at 1516.811 kb on - strand, within Psyr_1338at 1516.811 kb on - strand, within Psyr_1338at 1516.859 kb on + strand, within Psyr_1338at 1516.859 kb on + strand, within Psyr_1338at 1516.860 kb on - strand, within Psyr_1338at 1516.862 kb on + strand, within Psyr_1338at 1516.862 kb on + strand, within Psyr_1338at 1516.863 kb on - strand, within Psyr_1338at 1516.900 kb on + strand, within Psyr_1338at 1516.900 kb on + strand, within Psyr_1338at 1516.900 kb on + strand, within Psyr_1338at 1516.900 kb on + strand, within Psyr_1338at 1516.900 kb on + strand, within Psyr_1338at 1516.901 kb on - strand, within Psyr_1338at 1516.901 kb on - strand, within Psyr_1338at 1516.901 kb on - strand, within Psyr_1338at 1517.039 kb on + strandat 1517.040 kb on - strandat 1517.040 kb on - strandat 1517.082 kb on + strandat 1517.082 kb on + strandat 1517.082 kb on + strandat 1517.171 kb on + strandat 1517.171 kb on + strandat 1517.172 kb on - strandat 1517.172 kb on - strandat 1517.291 kb on + strand, within Psyr_1339at 1517.321 kb on + strand, within Psyr_1339at 1517.322 kb on - strand, within Psyr_1339at 1517.322 kb on - strand, within Psyr_1339at 1517.322 kb on - strand, within Psyr_1339at 1517.340 kb on + strand, within Psyr_1339at 1517.341 kb on - strand, within Psyr_1339at 1517.470 kb on + strand, within Psyr_1339at 1517.471 kb on - strand, within Psyr_1339at 1517.513 kb on + strand, within Psyr_1339at 1517.513 kb on + strand, within Psyr_1339at 1517.513 kb on + strand, within Psyr_1339at 1517.514 kb on - strand, within Psyr_1339at 1517.524 kb on + strand, within Psyr_1339at 1517.525 kb on - strand, within Psyr_1339at 1517.525 kb on - strand, within Psyr_1339at 1517.659 kb on + strand, within Psyr_1339at 1517.659 kb on + strand, within Psyr_1339at 1517.659 kb on + strand, within Psyr_1339at 1517.660 kb on - strand, within Psyr_1339at 1517.660 kb on - strand, within Psyr_1339at 1517.762 kb on + strand, within Psyr_1339at 1517.763 kb on - strand, within Psyr_1339at 1517.885 kb on + strandat 1517.885 kb on + strandat 1517.885 kb on + strandat 1517.885 kb on + strandat 1517.886 kb on - strandat 1517.938 kb on + strandat 1517.985 kb on + strandat 1518.011 kb on - strandat 1518.057 kb on - strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.060 kb on + strandat 1518.061 kb on - strandat 1518.061 kb on - strandat 1518.061 kb on - strandat 1518.061 kb on - strandat 1518.061 kb on - strandat 1518.061 kb on - strandat 1518.061 kb on - strandat 1518.061 kb on - strandat 1518.061 kb on - strandat 1518.116 kb on - strandat 1518.116 kb on - strandat 1518.116 kb on - strandat 1518.138 kb on - strandat 1518.322 kb on + strand, within Psyr_1340at 1518.322 kb on + strand, within Psyr_1340at 1518.323 kb on - strand, within Psyr_1340at 1518.323 kb on - strand, within Psyr_1340at 1518.323 kb on - strand, within Psyr_1340at 1518.417 kb on + strand, within Psyr_1340at 1518.417 kb on + strand, within Psyr_1340at 1518.418 kb on - strand, within Psyr_1340at 1518.418 kb on - strand, within Psyr_1340at 1518.487 kb on + strand, within Psyr_1340at 1518.487 kb on + strand, within Psyr_1340at 1518.488 kb on - strand, within Psyr_1340at 1518.488 kb on - strand, within Psyr_1340at 1518.488 kb on - strand, within Psyr_1340at 1518.670 kb on + strand, within Psyr_1340at 1518.671 kb on - strand, within Psyr_1340at 1518.671 kb on - strand, within Psyr_1340at 1518.671 kb on - strand, within Psyr_1340at 1518.683 kb on - strand, within Psyr_1340at 1518.683 kb on - strand, within Psyr_1340at 1518.683 kb on - strand, within Psyr_1340at 1518.916 kb on + strand, within Psyr_1340at 1518.916 kb on + strand, within Psyr_1340at 1518.916 kb on + strand, within Psyr_1340at 1518.917 kb on - strand, within Psyr_1340at 1518.917 kb on - strand, within Psyr_1340at 1518.917 kb on - strand, within Psyr_1340at 1518.917 kb on - strand, within Psyr_1340at 1518.917 kb on - strand, within Psyr_1340at 1518.917 kb on - strand, within Psyr_1340at 1518.925 kb on + strand, within Psyr_1340

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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1,516,186 - -1.1
1,516,238 - -0.1
1,516,251 - -1.9
1,516,340 - Psyr_1337 0.31 +1.3
1,516,481 + Psyr_1337 0.72 -2.1
1,516,482 - Psyr_1337 0.72 -0.0
1,516,482 - Psyr_1337 0.72 -0.4
1,516,524 + Psyr_1337 0.84 +0.3
1,516,525 - Psyr_1337 0.84 +0.9
1,516,525 - Psyr_1337 0.84 +1.9
1,516,564 + -0.7
1,516,565 - -0.5
1,516,565 - -1.1
1,516,571 + -2.9
1,516,571 + +0.9
1,516,571 + -2.3
1,516,571 + +0.2
1,516,571 + +0.1
1,516,572 - -0.1
1,516,572 - +0.4
1,516,572 - +0.1
1,516,583 + -1.7
1,516,583 + -0.4
1,516,648 + -0.7
1,516,649 - +0.3
1,516,649 - -0.5
1,516,673 + +1.9
1,516,730 + -1.0
1,516,780 + Psyr_1338 0.14 +0.6
1,516,780 + Psyr_1338 0.14 +0.9
1,516,780 + Psyr_1338 0.14 +0.9
1,516,780 + Psyr_1338 0.14 -0.5
1,516,781 - Psyr_1338 0.14 +0.1
1,516,781 - Psyr_1338 0.14 +1.3
1,516,781 - Psyr_1338 0.14 +0.3
1,516,781 - Psyr_1338 0.14 -0.0
1,516,810 + Psyr_1338 0.26 -0.3
1,516,810 + Psyr_1338 0.26 -1.0
1,516,811 - Psyr_1338 0.27 +1.0
1,516,811 - Psyr_1338 0.27 -0.2
1,516,811 - Psyr_1338 0.27 -0.6
1,516,811 - Psyr_1338 0.27 +0.9
1,516,859 + Psyr_1338 0.47 +0.9
1,516,859 + Psyr_1338 0.47 +0.3
1,516,860 - Psyr_1338 0.47 +0.0
1,516,862 + Psyr_1338 0.48 -0.5
1,516,862 + Psyr_1338 0.48 -1.2
1,516,863 - Psyr_1338 0.49 +0.3
1,516,900 + Psyr_1338 0.64 +0.7
1,516,900 + Psyr_1338 0.64 +2.3
1,516,900 + Psyr_1338 0.64 +1.2
1,516,900 + Psyr_1338 0.64 -0.7
1,516,900 + Psyr_1338 0.64 +2.1
1,516,901 - Psyr_1338 0.65 +1.2
1,516,901 - Psyr_1338 0.65 +0.2
1,516,901 - Psyr_1338 0.65 -0.1
1,517,039 + -0.7
1,517,040 - -0.0
1,517,040 - -1.2
1,517,082 + +0.1
1,517,082 + +0.9
1,517,082 + -0.8
1,517,171 + -0.3
1,517,171 + +0.1
1,517,172 - +0.2
1,517,172 - -1.8
1,517,291 + Psyr_1339 0.19 +0.9
1,517,321 + Psyr_1339 0.22 -0.8
1,517,322 - Psyr_1339 0.23 -0.6
1,517,322 - Psyr_1339 0.23 -0.0
1,517,322 - Psyr_1339 0.23 -0.1
1,517,340 + Psyr_1339 0.25 -1.1
1,517,341 - Psyr_1339 0.25 -0.2
1,517,470 + Psyr_1339 0.40 -1.1
1,517,471 - Psyr_1339 0.40 +0.1
1,517,513 + Psyr_1339 0.45 +0.1
1,517,513 + Psyr_1339 0.45 -0.6
1,517,513 + Psyr_1339 0.45 -2.3
1,517,514 - Psyr_1339 0.46 -0.7
1,517,524 + Psyr_1339 0.47 +0.2
1,517,525 - Psyr_1339 0.47 -0.1
1,517,525 - Psyr_1339 0.47 -1.1
1,517,659 + Psyr_1339 0.63 +0.6
1,517,659 + Psyr_1339 0.63 -0.0
1,517,659 + Psyr_1339 0.63 -1.8
1,517,660 - Psyr_1339 0.63 +0.1
1,517,660 - Psyr_1339 0.63 -0.5
1,517,762 + Psyr_1339 0.75 -0.9
1,517,763 - Psyr_1339 0.75 +0.9
1,517,885 + -0.5
1,517,885 + +0.3
1,517,885 + -0.4
1,517,885 + +0.2
1,517,886 - -0.1
1,517,938 + +2.9
1,517,985 + +0.9
1,518,011 - +0.0
1,518,057 - -1.6
1,518,060 + +0.9
1,518,060 + +0.8
1,518,060 + -2.5
1,518,060 + -0.0
1,518,060 + +0.1
1,518,060 + +0.6
1,518,060 + -0.9
1,518,060 + -0.6
1,518,060 + +1.1
1,518,060 + -0.3
1,518,060 + -0.0
1,518,060 + +1.1
1,518,060 + -1.3
1,518,061 - -0.7
1,518,061 - +0.2
1,518,061 - +2.2
1,518,061 - -0.7
1,518,061 - +0.6
1,518,061 - -1.9
1,518,061 - -0.5
1,518,061 - -0.1
1,518,061 - -0.4
1,518,116 - +1.7
1,518,116 - -1.5
1,518,116 - -0.5
1,518,138 - -1.6
1,518,322 + Psyr_1340 0.17 +1.6
1,518,322 + Psyr_1340 0.17 -2.0
1,518,323 - Psyr_1340 0.18 -0.8
1,518,323 - Psyr_1340 0.18 -0.4
1,518,323 - Psyr_1340 0.18 -1.4
1,518,417 + Psyr_1340 0.25 -2.1
1,518,417 + Psyr_1340 0.25 -0.3
1,518,418 - Psyr_1340 0.25 -1.3
1,518,418 - Psyr_1340 0.25 +1.2
1,518,487 + Psyr_1340 0.31 -0.1
1,518,487 + Psyr_1340 0.31 -0.1
1,518,488 - Psyr_1340 0.31 -0.7
1,518,488 - Psyr_1340 0.31 -1.2
1,518,488 - Psyr_1340 0.31 +0.5
1,518,670 + Psyr_1340 0.47 -1.1
1,518,671 - Psyr_1340 0.47 -0.3
1,518,671 - Psyr_1340 0.47 -2.1
1,518,671 - Psyr_1340 0.47 -0.9
1,518,683 - Psyr_1340 0.48 +0.9
1,518,683 - Psyr_1340 0.48 -0.8
1,518,683 - Psyr_1340 0.48 -0.1
1,518,916 + Psyr_1340 0.67 -0.1
1,518,916 + Psyr_1340 0.67 +1.5
1,518,916 + Psyr_1340 0.67 +0.2
1,518,917 - Psyr_1340 0.67 -0.4
1,518,917 - Psyr_1340 0.67 +0.4
1,518,917 - Psyr_1340 0.67 +0.2
1,518,917 - Psyr_1340 0.67 -1.6
1,518,917 - Psyr_1340 0.67 -2.3
1,518,917 - Psyr_1340 0.67 -0.4
1,518,925 + Psyr_1340 0.68 -1.1

Or see this region's nucleotide sequence