Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1329

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1328 and Psyr_1329 are separated by 178 nucleotidesPsyr_1329 and Psyr_1330 are separated by 19 nucleotidesPsyr_1330 and Psyr_1331 overlap by 1 nucleotides Psyr_1328: Psyr_1328 - glycerol-3-phosphate acyltransferase, at 1,504,725 to 1,507,226 _1328 Psyr_1329: Psyr_1329 - conserved hypothetical protein, at 1,507,405 to 1,507,782 _1329 Psyr_1330: Psyr_1330 - 23S rRNA m(1)G-745 methyltransferase, at 1,507,802 to 1,508,611 _1330 Psyr_1331: Psyr_1331 - succinyldiaminopimelate desuccinylase, at 1,508,611 to 1,509,762 _1331 Position (kb) 1507 1508Strain fitness (log2 ratio) -2 -1 0 1 2at 1506.430 kb on + strand, within Psyr_1328at 1506.430 kb on + strand, within Psyr_1328at 1506.430 kb on + strand, within Psyr_1328at 1506.431 kb on - strand, within Psyr_1328at 1506.431 kb on - strand, within Psyr_1328at 1506.431 kb on - strand, within Psyr_1328at 1506.431 kb on - strand, within Psyr_1328at 1506.431 kb on - strand, within Psyr_1328at 1506.436 kb on + strand, within Psyr_1328at 1506.436 kb on + strand, within Psyr_1328at 1506.436 kb on + strand, within Psyr_1328at 1506.437 kb on - strand, within Psyr_1328at 1506.437 kb on - strand, within Psyr_1328at 1506.437 kb on - strand, within Psyr_1328at 1506.762 kb on + strand, within Psyr_1328at 1506.762 kb on + strand, within Psyr_1328at 1506.763 kb on - strand, within Psyr_1328at 1506.763 kb on - strand, within Psyr_1328at 1506.970 kb on + strand, within Psyr_1328at 1506.970 kb on + strand, within Psyr_1328at 1506.970 kb on + strand, within Psyr_1328at 1506.970 kb on + strand, within Psyr_1328at 1506.971 kb on - strand, within Psyr_1328at 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.130 kb on + strandat 1507.130 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.172 kb on - strandat 1507.172 kb on - strandat 1507.172 kb on - strandat 1507.172 kb on - strandat 1507.172 kb on - strandat 1507.172 kb on - strandat 1507.172 kb on - strandat 1507.227 kb on - strandat 1507.379 kb on + strandat 1507.380 kb on - strandat 1507.380 kb on - strandat 1507.380 kb on - strandat 1507.423 kb on - strandat 1507.513 kb on + strand, within Psyr_1329at 1507.513 kb on + strand, within Psyr_1329at 1507.513 kb on + strand, within Psyr_1329at 1507.513 kb on + strand, within Psyr_1329at 1507.514 kb on - strand, within Psyr_1329at 1507.514 kb on - strand, within Psyr_1329at 1507.514 kb on - strand, within Psyr_1329at 1507.514 kb on - strand, within Psyr_1329at 1507.757 kb on + strandat 1507.757 kb on + strandat 1507.758 kb on - strandat 1507.803 kb on + strandat 1507.803 kb on + strandat 1507.803 kb on + strandat 1507.803 kb on + strandat 1507.804 kb on - strandat 1507.804 kb on - strandat 1507.804 kb on - strandat 1507.818 kb on + strandat 1507.819 kb on - strandat 1508.049 kb on + strand, within Psyr_1330at 1508.049 kb on + strand, within Psyr_1330at 1508.049 kb on + strand, within Psyr_1330at 1508.050 kb on - strand, within Psyr_1330at 1508.050 kb on - strand, within Psyr_1330at 1508.050 kb on - strand, within Psyr_1330at 1508.286 kb on + strand, within Psyr_1330at 1508.287 kb on - strand, within Psyr_1330at 1508.328 kb on + strand, within Psyr_1330at 1508.328 kb on + strand, within Psyr_1330at 1508.328 kb on + strand, within Psyr_1330at 1508.329 kb on - strand, within Psyr_1330at 1508.329 kb on - strand, within Psyr_1330at 1508.331 kb on + strand, within Psyr_1330at 1508.332 kb on - strand, within Psyr_1330at 1508.514 kb on + strand, within Psyr_1330

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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1,506,430 + Psyr_1328 0.68 +0.7
1,506,430 + Psyr_1328 0.68 +0.1
1,506,430 + Psyr_1328 0.68 +1.5
1,506,431 - Psyr_1328 0.68 +0.5
1,506,431 - Psyr_1328 0.68 +0.5
1,506,431 - Psyr_1328 0.68 +0.3
1,506,431 - Psyr_1328 0.68 +1.2
1,506,431 - Psyr_1328 0.68 +0.2
1,506,436 + Psyr_1328 0.68 +0.3
1,506,436 + Psyr_1328 0.68 +1.9
1,506,436 + Psyr_1328 0.68 -1.0
1,506,437 - Psyr_1328 0.68 +0.9
1,506,437 - Psyr_1328 0.68 +0.4
1,506,437 - Psyr_1328 0.68 -0.2
1,506,762 + Psyr_1328 0.81 +0.2
1,506,762 + Psyr_1328 0.81 +0.4
1,506,763 - Psyr_1328 0.81 -0.2
1,506,763 - Psyr_1328 0.81 -0.7
1,506,970 + Psyr_1328 0.90 +0.1
1,506,970 + Psyr_1328 0.90 +0.9
1,506,970 + Psyr_1328 0.90 +0.4
1,506,970 + Psyr_1328 0.90 +0.4
1,506,971 - Psyr_1328 0.90 -2.1
1,507,096 + -0.1
1,507,096 + -1.3
1,507,096 + +1.1
1,507,096 + -2.1
1,507,096 + +0.9
1,507,096 + -0.5
1,507,096 + +0.7
1,507,096 + +0.5
1,507,096 + -1.1
1,507,097 - -0.1
1,507,097 - -0.7
1,507,097 - -0.6
1,507,097 - -1.0
1,507,097 - -1.0
1,507,097 - +1.3
1,507,097 - -0.1
1,507,097 - -0.7
1,507,097 - -0.3
1,507,130 + +0.4
1,507,130 + -0.4
1,507,171 + -0.6
1,507,171 + -0.8
1,507,171 + +0.3
1,507,171 + -0.1
1,507,171 + +0.7
1,507,172 - +0.2
1,507,172 - -0.5
1,507,172 - +0.9
1,507,172 - +0.5
1,507,172 - -2.5
1,507,172 - +0.2
1,507,172 - -0.6
1,507,227 - +0.9
1,507,379 + -0.8
1,507,380 - -1.7
1,507,380 - +1.3
1,507,380 - -0.6
1,507,423 - +0.4
1,507,513 + Psyr_1329 0.29 +0.5
1,507,513 + Psyr_1329 0.29 -1.5
1,507,513 + Psyr_1329 0.29 -0.5
1,507,513 + Psyr_1329 0.29 +0.9
1,507,514 - Psyr_1329 0.29 -1.6
1,507,514 - Psyr_1329 0.29 -0.5
1,507,514 - Psyr_1329 0.29 -0.6
1,507,514 - Psyr_1329 0.29 +0.2
1,507,757 + -0.1
1,507,757 + -0.1
1,507,758 - +0.5
1,507,803 + -1.9
1,507,803 + -0.7
1,507,803 + -0.1
1,507,803 + -0.1
1,507,804 - +0.5
1,507,804 - -1.1
1,507,804 - +0.3
1,507,818 + -2.3
1,507,819 - +0.3
1,508,049 + Psyr_1330 0.30 -0.1
1,508,049 + Psyr_1330 0.30 +2.4
1,508,049 + Psyr_1330 0.30 -0.7
1,508,050 - Psyr_1330 0.31 -0.7
1,508,050 - Psyr_1330 0.31 +0.7
1,508,050 - Psyr_1330 0.31 -0.4
1,508,286 + Psyr_1330 0.60 -0.1
1,508,287 - Psyr_1330 0.60 -2.5
1,508,328 + Psyr_1330 0.65 +1.3
1,508,328 + Psyr_1330 0.65 -0.5
1,508,328 + Psyr_1330 0.65 -1.2
1,508,329 - Psyr_1330 0.65 -0.8
1,508,329 - Psyr_1330 0.65 +0.4
1,508,331 + Psyr_1330 0.65 +0.5
1,508,332 - Psyr_1330 0.65 -0.5
1,508,514 + Psyr_1330 0.88 -1.6

Or see this region's nucleotide sequence